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dbVar

Database of genomic structural variation

nsv5877950

Organism: Homo sapiens

Study:nstd209 (Almarri et al. 2020)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:977

Publication(s):Almarri et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 149 SVs from 41 studies. See in: genome view

Submitted genomic206,641,337-206,642,313

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5877950	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000001.11	Chr1	206,641,337	206,642,313
nsv5877950	Remapped	Perfect	GRCh37.p13	Primary Assembly	Second Pass	NC_000001.10	Chr1	206,814,682	206,815,658
nsv5877950	Remapped	Perfect	GRCh37.p13	PATCHES	First Pass	NW_003871057.1	Chr1\|NW_00 3871057.1	632,191	633,167

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv17354484	deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv17354484	Submitted genomic		NC_000001.11:g.206 641337_206642313de l	GRCh38 (hg38)		NC_000001.11	Chr1	206,641,337	206,642,313
nssv17354484	Remapped	Perfect	NW_003871057.1:g.6 32191_633167del	GRCh37.p13	First Pass	NW_003871057.1	Chr1\|NW_00 3871057.1	632,191	633,167
nssv17354484	Remapped	Perfect	NC_000001.10:g.206 814682_206815658de l	GRCh37.p13	Second Pass	NC_000001.10	Chr1	206,814,682	206,815,658

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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