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dbVar

Database of genomic structural variation

nsv5869101

Organism: Homo sapiens

Study:nstd209 (Almarri et al. 2020)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:99

Publication(s):Almarri et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 382 SVs from 34 studies. See in: genome view

Submitted genomic73,075,949-73,076,047

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5869101	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000023.11	ChrX	73,075,949	73,076,047
nsv5869101	Remapped	Perfect	GRCh37.p13	Primary Assembly	Second Pass	NC_000023.10	ChrX	72,295,788	72,295,886
nsv5869101	Remapped	Perfect	GRCh37.p13	PATCHES	First Pass	NW_004070882.1	ChrX\|NW_00 4070882.1	764,966	765,064

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv17458074	deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv17458074	Submitted genomic		NC_000023.11:g.730 75949_73076047del	GRCh38 (hg38)		NC_000023.11	ChrX	73,075,949	73,076,047
nssv17458074	Remapped	Perfect	NW_004070882.1:g.7 64966_765064del	GRCh37.p13	First Pass	NW_004070882.1	ChrX\|NW_00 4070882.1	764,966	765,064
nssv17458074	Remapped	Perfect	NC_000023.10:g.722 95788_72295886del	GRCh37.p13	Second Pass	NC_000023.10	ChrX	72,295,788	72,295,886

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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