nsv5326104
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,806,855
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 4761 SVs from 112 studies. See in: genome view
Overlapping variant regions from other studies: 4761 SVs from 112 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5326104 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000011.10 | Chr11 | 58,678,659 (-9, +5) | 60,485,513 (-4, +1) | ||
| nsv5326104 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 58,446,132 (-9, +5) | 60,252,986 (-4, +1) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16741398 | inversion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16741398 | Submitted genomic | NC_000011.10:g.(58 678650_58678664)_( 60485509_60485514) inv | GRCh38.p13 | NC_000011.10 | Chr11 | 58,678,659 (-9, +5) | 60,485,513 (-4, +1) | ||
| nssv16741398 | Remapped | Perfect | NC_000011.9:g.(584 46123_58446137)_(6 0252982_60252987)i nv | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 58,446,132 (-9, +5) | 60,252,986 (-4, +1) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16741398 | <0.001 |