nsv5317515
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,176
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 160 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 160 SVs from 37 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5317515 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000009.12 | Chr9 | 126,631,516 (-23, +22) | 126,632,691 (-25, +21) | ||
| nsv5317515 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 129,393,795 (-23, +22) | 129,394,970 (-25, +21) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16754470 | deletion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16754470 | Submitted genomic | NC_000009.12:g.(12 6631493_126631538) _(126632666_126632 712)del | GRCh38.p13 | NC_000009.12 | Chr9 | 126,631,516 (-23, +22) | 126,632,691 (-25, +21) | ||
| nssv16754470 | Remapped | Perfect | NC_000009.11:g.(12 9393772_129393817) _(129394945_129394 991)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 129,393,795 (-23, +22) | 129,394,970 (-25, +21) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16754470 | <0.001 |