nsv5310477
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:540
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 193 SVs from 36 studies. See in: genome view
Overlapping variant regions from other studies: 193 SVs from 36 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5310477 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000003.12 | Chr3 | 112,837,705 (-9, +9) | 112,838,244 (-5, +4) | ||
| nsv5310477 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 112,556,552 (-9, +9) | 112,557,091 (-5, +4) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16773051 | deletion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16773051 | Submitted genomic | NC_000003.12:g.(11 2837696_112837714) _(112838239_112838 248)del | GRCh38.p13 | NC_000003.12 | Chr3 | 112,837,705 (-9, +9) | 112,838,244 (-5, +4) | ||
| nssv16773051 | Remapped | Perfect | NC_000003.11:g.(11 2556543_112556561) _(112557086_112557 095)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 112,556,552 (-9, +9) | 112,557,091 (-5, +4) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16773051 | <0.001 |