nsv4790501
- Organism: Homo sapiens
- Study:nstd200 (Abel et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:868
- Publication(s):Abel et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 84 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 9 SVs from 6 studies. See in: genome view
Overlapping variant regions from other studies: 84 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4790501 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 44,877,748 | 44,878,615 |
| nsv4790501 | Remapped | Perfect | GRCh38.p12 | PATCHES | Second Pass | NW_009646197.1 | Chr3|NW_00 9646197.1 | 403,098 | 403,965 |
| nsv4790501 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 44,919,240 | 44,920,107 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16308899 | deletion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16308899 | Remapped | Perfect | NW_009646197.1:g.4 03098_403965del | GRCh38.p12 | Second Pass | NW_009646197.1 | Chr3|NW_00 9646197.1 | 403,098 | 403,965 |
| nssv16308899 | Remapped | Perfect | NC_000003.12:g.448 77748_44878615del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 44,877,748 | 44,878,615 |
| nssv16308899 | Submitted genomic | NC_000003.11:g.449 19240_44920107del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 44,919,240 | 44,920,107 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16308899 | <0.001 | 1 | 16834 |