nsv3958434
- Organism: Homo sapiens
- Study:nstd168 (Levy-Sakin et al. 2019)
- Variant Type:copy number variation
- Method Type:Optical mapping
- Submitted on:GRCh38 (hg38)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:32,364
- Publication(s):Levy-Sakin et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 178 SVs from 33 studies. See in: genome view
Overlapping variant regions from other studies: 184 SVs from 33 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3958434 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000001.11 | Chr1 | 212,410,156 | 212,442,519 | ||
| nsv3958434 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 212,583,498 | 212,615,861 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv15211115 | deletion | Optical mapping | Optical mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15211115 | Submitted genomic | NC_000001.11:g.(21 2410156_?)_(?_2124 42519)del | GRCh38 (hg38) | NC_000001.11 | Chr1 | 212,410,156 | 212,442,519 | ||
| nssv15211115 | Remapped | Perfect | NC_000001.10:g.(21 2583498_?)_(?_2126 15861)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 212,583,498 | 212,615,861 |