nsv3908605
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37, GRCh38, NCBI36
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:55,504,541
- Description:GRCh38/hg38 2p25.3-16.1(chr2:66097-55570637)x3 AND See cases
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 156866 SVs from 143 studies. See in: genome view
Overlapping variant regions from other studies: 156859 SVs from 143 studies. See in: genome view
Overlapping variant regions from other studies: 42196 SVs from 40 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Assembly | Assembly Unit | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|
| nsv3908605 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000002.12 | Chr2 | 66,097 | 55,570,637 |
| nsv3908605 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 66,097 | 55,797,773 |
| nsv3908605 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000002.10 | Chr2 | 56,097 | 55,651,277 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15161279 | copy number gain | Multiple | Multiple | See cases | Pathogenic | ClinVar | RCV000052933.8, VCV000059133.1 | 3 |
Variant Call Placement Information
| Variant Call ID | Placement Type | HGVS | Assembly | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|
| nssv15161279 | Submitted genomic | NC_000002.12:g.(?_ 66097)_(55570637_? )dup | GRCh38 (hg38) | NC_000002.12 | Chr2 | 66,097 | 55,570,637 |
| nssv15161279 | Submitted genomic | NC_000002.11:g.(?_ 66097)_(55797773_? )dup | GRCh37 (hg19) | NC_000002.11 | Chr2 | 66,097 | 55,797,773 |
| nssv15161279 | Submitted genomic | NC_000002.10:g.(?_ 56097)_(55651277_? )dup | NCBI36 (hg18) | NC_000002.10 | Chr2 | 56,097 | 55,651,277 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15161279 | GRCh37: NC_000002.11:g.(?_66097)_(55797773_?)dup, GRCh38: NC_000002.12:g.(?_66097)_(55570637_?)dup, NCBI36: NC_000002.10:g.(?_56097)_(55651277_?)dup | copy number gain | not provided | See cases | Pathogenic | ClinVar | RCV000052933.8, VCV000059133.1 | 3 |