nsv1426983
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:21
- Description:MOTIF=[CGGCCC],NS=[285],REF=[3.5],RL=[21],RPA=
[4.5],RU=[CGGCCC],QUAL=[170826] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 92 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 92 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1426983 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 32,335,865 | 32,335,885 |
| nsv1426983 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 32,801,466 | 32,801,486 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv8707398 | short tandem repeat | (CGGCCC) 4.5 | Sequencing | Genotyping |
| nssv8707399 | short tandem repeat | (CGGCCC) 3.5 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv8707398 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 32,335,865 | 32,335,885 |
| nssv8707399 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 32,335,865 | 32,335,885 |
| nssv8707398 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 32,801,466 | 32,801,486 | ||
| nssv8707399 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 32,801,466 | 32,801,486 |