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GRCh37/hg19 12q23.1-23.3(chr12:100580198-105804075) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 1, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002053014.3

Allele description [Variation Report for GRCh37/hg19 12q23.1-23.3(chr12:100580198-105804075)]

GRCh37/hg19 12q23.1-23.3(chr12:100580198-105804075)

Genes:
  • NT5DC3:5'-nucleotidase domain containing 3 [Gene - OMIM - HGNC]
  • ARL1:ADP ribosylation factor like GTPase 1 [Gene - OMIM - HGNC]
  • DEPDC4:DEP domain containing 4 [Gene - HGNC]
  • DRAM1:DNA damage regulated autophagy modulator 1 [Gene - OMIM - HGNC]
  • EID3:EP300 interacting inhibitor of differentiation 3 [Gene - OMIM - HGNC]
  • GNPTAB:N-acetylglucosamine-1-phosphate transferase subunits alpha and beta [Gene - OMIM - HGNC]
  • NOPCHAP1:NOP protein chaperone 1 [Gene - HGNC]
  • PARPBP:PARP1 binding protein [Gene - OMIM - HGNC]
  • SCYL2:SCY1 like pseudokinase 2 [Gene - OMIM - HGNC]
  • SPIC:Spi-C transcription factor [Gene - OMIM - HGNC]
  • UTP20:UTP20 small subunit processome component [Gene - OMIM - HGNC]
  • WASHC3:WASH complex subunit 3 [Gene - OMIM - HGNC]
  • WASHC4:WASH complex subunit 4 [Gene - OMIM - HGNC]
  • ASCL1:achaete-scute family bHLH transcription factor 1 [Gene - OMIM - HGNC]
  • ACTR6:actin related protein 6 [Gene - OMIM - HGNC]
  • APPL2:adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 [Gene - OMIM - HGNC]
  • ALDH1L2:aldehyde dehydrogenase 1 family member L2 [Gene - OMIM - HGNC]
  • ANO4:anoctamin 4 [Gene - OMIM - HGNC]
  • CHST11:carbohydrate sulfotransferase 11 [Gene - OMIM - HGNC]
  • CHPT1:choline phosphotransferase 1 [Gene - OMIM - HGNC]
  • C12orf42:chromosome 12 open reading frame 42 [Gene - HGNC]
  • C12orf73:chromosome 12 open reading frame 73 [Gene - OMIM - HGNC]
  • C12orf75:chromosome 12 open reading frame 75 [Gene - HGNC]
  • GLT8D2:glycosyltransferase 8 domain containing 2 [Gene - HGNC]
  • GAS2L3:growth arrest specific 2 like 3 [Gene - OMIM - HGNC]
  • HSP90B1:heat shock protein 90 beta family member 1 [Gene - OMIM - HGNC]
  • HCFC2:host cell factor C2 [Gene - OMIM - HGNC]
  • IGF1:insulin like growth factor 1 [Gene - OMIM - HGNC]
  • MYBPC1:myosin binding protein C1 [Gene - OMIM - HGNC]
  • NR1H4:nuclear receptor subfamily 1 group H member 4 [Gene - OMIM - HGNC]
  • NFYB:nuclear transcription factor Y subunit beta [Gene - OMIM - HGNC]
  • NUP37:nucleoporin 37 [Gene - OMIM - HGNC]
  • PAH:phenylalanine hydroxylase [Gene - OMIM - HGNC]
  • PMCH:pro-melanin concentrating hormone [Gene - OMIM - HGNC]
  • SLC17A8:solute carrier family 17 member 8 [Gene - OMIM - HGNC]
  • SLC41A2:solute carrier family 41 member 2 [Gene - OMIM - HGNC]
  • SLC5A8:solute carrier family 5 member 8 [Gene - OMIM - HGNC]
  • STAB2:stabilin 2 [Gene - OMIM - HGNC]
  • SYCP3:synaptonemal complex protein 3 [Gene - OMIM - HGNC]
  • TXNRD1:thioredoxin reductase 1 [Gene - OMIM - HGNC]
  • TDG:thymine DNA glycosylase [Gene - OMIM - HGNC]
Variant type:
copy number gain
Cytogenetic location:
12q23.1-23.3
Genomic location:
Chr12: 100580198 - 105804075 (on Assembly GRCh37)
Preferred name:
GRCh37/hg19 12q23.1-23.3(chr12:100580198-105804075)
Observations:
1

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002319448ARUP Laboratories, Cytogenetics and Genomic Microarray, ARUP Laboratories
criteria provided, single submitter

(ARUP Cytogenomic Constitutional CNV Assertion Criteria)
Uncertain significance
(Mar 1, 2022)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown1not providednot providednot providednot providedclinical testing

Details of each submission

From ARUP Laboratories, Cytogenetics and Genomic Microarray, ARUP Laboratories, SCV002319448.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not providednot providednot provided

Last Updated: Aug 15, 2022