chr1:17555508-24706269 complex variant AND Breast ductal adenocarcinoma

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jul 20, 2015
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000207266.1

Allele description [Variation Report for chr1:17555508-24706269 complex variant]

chr1:17555508-24706269 complex variant

Genes:
  • HMGCL:3-hydroxy-3-methylglutaryl-CoA lyase [Gene - OMIM - HGNC]
  • HTR1D:5-hydroxytryptamine receptor 1D [Gene - OMIM - HGNC]
  • HTR6:5-hydroxytryptamine receptor 6 [Gene - OMIM - HGNC]
  • ASAP3:ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 [Gene - OMIM - HGNC]
  • E2F2:E2F transcription factor 2 [Gene - OMIM - HGNC]
  • EPHA8:EPH receptor A8 [Gene - OMIM - HGNC]
  • EPHB2:EPH receptor B2 [Gene - OMIM - HGNC]
  • EMC1:ER membrane protein complex subunit 1 [Gene - OMIM - HGNC]
  • MICOS10-NBL1:MICOS10-NBL1 readthrough [Gene - HGNC]
  • MRTO4:MRT4 homolog, ribosome maturation factor [Gene - OMIM - HGNC]
  • NBL1:NBL1, DAN family BMP antagonist [Gene - OMIM - HGNC]
  • NBPF3:NBPF member 3 [Gene - OMIM - HGNC]
  • OTUD3:OTU deubiquitinase 3 [Gene - OMIM - HGNC]
  • PITHD1:PITH domain containing 1 [Gene - OMIM - HGNC]
  • PINK1:PTEN induced kinase 1 [Gene - OMIM - HGNC]
  • RAP1GAP:RAP1 GTPase activating protein [Gene - OMIM - HGNC]
  • ARHGEF10L:Rho guanine nucleotide exchange factor 10 like [Gene - OMIM - HGNC]
  • SH2D5:SH2 domain containing 5 [Gene - HGNC]
  • UBXN10:UBX domain protein 10 [Gene - OMIM - HGNC]
  • GALE:UDP-galactose-4-epimerase [Gene - OMIM - HGNC]
  • WNT4:Wnt family member 4 [Gene - OMIM - HGNC]
  • ACTL8:actin like 8 [Gene - HGNC]
  • ALDH4A1:aldehyde dehydrogenase 4 family member A1 [Gene - OMIM - HGNC]
  • AKR7L:aldo-keto reductase family 7 like (gene/pseudogene) [Gene - OMIM - HGNC]
  • AKR7A2:aldo-keto reductase family 7 member A2 [Gene - OMIM - HGNC]
  • AKR7A3:aldo-keto reductase family 7 member A3 [Gene - OMIM - HGNC]
  • ALPL:alkaline phosphatase, biomineralization associated [Gene - OMIM - HGNC]
  • FUCA1:alpha-L-fucosidase 1 [Gene - OMIM - HGNC]
  • CAMK2N1:calcium/calmodulin dependent protein kinase II inhibitor 1 [Gene - OMIM - HGNC]
  • CNR2:cannabinoid receptor 2 [Gene - OMIM - HGNC]
  • CAPZB:capping actin protein of muscle Z-line subunit beta [Gene - OMIM - HGNC]
  • CDC42:cell division cycle 42 [Gene - OMIM - HGNC]
  • CELA3A:chymotrypsin like elastase 3A [Gene - OMIM - HGNC]
  • CELA3B:chymotrypsin like elastase 3B [Gene - OMIM - HGNC]
  • C1QA:complement C1q A chain [Gene - OMIM - HGNC]
  • C1QB:complement C1q B chain [Gene - OMIM - HGNC]
  • C1QC:complement C1q C chain [Gene - OMIM - HGNC]
  • CDA:cytidine deaminase [Gene - OMIM - HGNC]
  • DDOST:dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit [Gene - OMIM - HGNC]
  • ELOA:elongin A [Gene - OMIM - HGNC]
  • ECE1:endothelin converting enzyme 1 [Gene - OMIM - HGNC]
  • EIF4G3:eukaryotic translation initiation factor 4 gamma 3 [Gene - OMIM - HGNC]
  • FAM43B:family with sequence similarity 43 member B [Gene - HGNC]
  • GRHL3:grainyhead like transcription factor 3 [Gene - OMIM - HGNC]
  • HSPG2:heparan sulfate proteoglycan 2 [Gene - OMIM - HGNC]
  • HP1BP3:heterochromatin protein 1 binding protein 3 [Gene - OMIM - HGNC]
  • HNRNPR:heterogeneous nuclear ribonucleoprotein R [Gene - OMIM - HGNC]
  • IGSF21:immunoglobin superfamily member 21 [Gene - HGNC]
  • ID3:inhibitor of DNA binding 3 [Gene - OMIM - HGNC]
  • IFNLR1:interferon lambda receptor 1 [Gene - OMIM - HGNC]
  • IL22RA1:interleukin 22 receptor subunit alpha 1 [Gene - OMIM - HGNC]
  • IFFO2:intermediate filament family orphan 2 [Gene - HGNC]
  • KLHDC7A:kelch domain containing 7A [Gene - HGNC]
  • KIF17:kinesin family member 17 [Gene - OMIM - HGNC]
  • LACTBL1:lactamase beta like 1 [Gene - HGNC]
  • LUZP1:leucine zipper protein 1 [Gene - OMIM - HGNC]
  • LDLRAD2:low density lipoprotein receptor class A domain containing 2 [Gene - HGNC]
  • KDM1A:lysine demethylase 1A [Gene - OMIM - HGNC]
  • LYPLA2:lysophospholipase 2 [Gene - OMIM - HGNC]
  • MUL1:mitochondrial E3 ubiquitin protein ligase 1 [Gene - OMIM - HGNC]
  • MICOS10:mitochondrial contact site and cristae organizing system subunit 10 [Gene - OMIM - HGNC]
  • MDS2:myelodysplastic syndrome 2 translocation associated [Gene - OMIM - HGNC]
  • MYOM3:myomesin 3 [Gene - OMIM - HGNC]
  • PAX7:paired box 7 [Gene - OMIM - HGNC]
  • PADI1:peptidyl arginine deiminase 1 [Gene - OMIM - HGNC]
  • PADI3:peptidyl arginine deiminase 3 [Gene - OMIM - HGNC]
  • PADI4:peptidyl arginine deiminase 4 [Gene - OMIM - HGNC]
  • PADI6:peptidyl arginine deiminase 6 [Gene - OMIM - HGNC]
  • PLA2G2A:phospholipase A2 group IIA [Gene - OMIM - HGNC]
  • PLA2G2C:phospholipase A2 group IIC [Gene - HGNC]
  • PLA2G2D:phospholipase A2 group IID [Gene - OMIM - HGNC]
  • PLA2G2E:phospholipase A2 group IIE [Gene - OMIM - HGNC]
  • PLA2G2F:phospholipase A2 group IIF [Gene - OMIM - HGNC]
  • PLA2G5:phospholipase A2 group V [Gene - OMIM - HGNC]
  • PNRC2:proline rich nuclear receptor coactivator 2 [Gene - OMIM - HGNC]
  • RCC2:regulator of chromosome condensation 2 [Gene - OMIM - HGNC]
  • RPL11:ribosomal protein L11 [Gene - OMIM - HGNC]
  • RNF186:ring finger protein 186 [Gene - OMIM - HGNC]
  • SRSF10:serine and arginine rich splicing factor 10 [Gene - OMIM - HGNC]
  • SLC66A1:solute carrier family 66 member 1 [Gene - OMIM - HGNC]
  • STPG1:sperm tail PG-rich repeat containing 1 [Gene - OMIM - HGNC]
  • TAS1R2:taste 1 receptor member 2 [Gene - OMIM - HGNC]
  • TEX46:testis expressed 46 [Gene - HGNC]
  • TCEA3:transcription elongation factor A3 [Gene - OMIM - HGNC]
  • TMCO4:transmembrane and coiled-coil domains 4 [Gene - HGNC]
  • UBR4:ubiquitin protein ligase E3 component n-recognin 4 [Gene - OMIM - HGNC]
  • USP48:ubiquitin specific peptidase 48 [Gene - OMIM - HGNC]
  • VWA5B1:von Willebrand factor A domain containing 5B1 [Gene - HGNC]
  • ZBTB40:zinc finger and BTB domain containing 40 [Gene - OMIM - HGNC]
  • ZNF436:zinc finger protein 436 [Gene - OMIM - HGNC]
Variant type:
Complex
Cytogenetic location:
1p36.13-36.11
Genomic location:
Chr1: 17555508 - 24706269 (on Assembly GRCh37)
Preferred name:
chr1:17555508-24706269 complex variant

Condition(s)

Name:
Breast ductal adenocarcinoma
Synonyms:
Ductal breast carcinoma; Breast cancer, invasive ductal
Identifiers:
MONDO: MONDO:0005590; MedGen: C1527349

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000258709Next Generation Diagnostics, Novartis Institutes for BioMedical Research, Inc.
no assertion criteria provided
Uncertain significance
(Jul 20, 2015)
somaticresearch

Description

Loss of heterozygosity

SCV000258709

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedsomaticyesnot providednot providednot providednot providednoresearch

Details of each submission

From Next Generation Diagnostics, Novartis Institutes for BioMedical Research, Inc., SCV000258709.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednoresearchnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1somaticyesnot providedleft axillary nodenot providednot providednot providednot providednot provided

Last Updated: Feb 14, 2024