1Z9M,4H5S,4H5S


Conserved Protein Domain Family
IgV_1_Necl_like

?
cd05717: IgV_1_Necl_like 
First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules; member of the V-set of Ig superfamily (IgSF) domains
The members here are composed of the N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2), and similar proteins. At least five nectin-like molecules have been identified (Necl-1 to Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the formation of synapses, axon bundles, and myelinated axons. Necl-2 is expressed in a wide variety of tissues and is a putative tumour suppressor gene which is downregulated in aggressive neuroblastoma. Necl-3 accumulates in central and peripheral nervous system tissue and has been shown to selectively interact with oligodendrocytes. This group also contains Class-I MHC-restricted T-cell-associated molecule (CRTAM), whose expression pattern is consistent with its expression in Class-I MHC-restricted T-cells.
Statistics
?
PSSM-Id: 409382
Aligned: 7 rows
Threshold Bit Score: 146.12
Created: 17-Aug-2007
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Structure:1Z9M, human CADM3 (Necl-1) N-terminal IgV domain dimer interface, contacts based on 3.5 A distance.
    View structure with Cn3D

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                              #  #    ## #     # #                                   
1Z9M_A     43 PWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI 122 human
4H5S_A      5 NHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPALKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLH 84  human
4H5S_B      4 LFTKDVTVIEGEVATISCQVNKSDDSVIQLLNPNRQTIYFRDFRPLKDSRFQLLNFSSSELKVSLTNVSISDEGRYFCQL 83  human
AAT98593   18 VAVQHMTVMEGETLTIKCHIRNAHRSHVEWKNPNGHVMFFNDHKALRDKRYKIINLSESDFSVSVSDVTFKDGGLYTCLH 97  rainbow trout
AAI12137   27 PLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSL 106 human
AAI25104   47 LFTKDVTVIEGEVATISCQVNKSDDSVIQLLNPNRQTIYFRDFRPLKDSRFQLLNFSSSELKVSLTNVSISDEGRYFCQL 126 human
O95727     21 NHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPALKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLH 100 human
Feature 1     #             
1Z9M_A    123 FTMPVRTAKSLVTV 136 human
4H5S_A     85 YSDSVSTKEVKVIV 98  human
4H5S_B     84 YTDPPQESYTTITV 97  human
AAT98593   98 YTKVPVVKSVTVTV 111 rainbow trout
AAI12137  107 FTMPVKTSKAYLTV 120 human
AAI25104  127 YTDPPQESYTTITV 140 human
O95727    101 YSDSVSTKEVKVIV 114 human

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap