3KEP


Conserved Protein Domain Family
Nucleoporin2

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pfam04096: Nucleoporin2 
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Nucleoporin autopeptidase
The nuclear pore complex protein plays a role in bidirectional transport across the nucleoporin complex in nucleocytoplasmic transport. The mammalian nuclear pore complex (NPC) is comprised of approximately 30 unique proteins, collectively known as nucleoporins. This family includes yeast family members such as Nup145p as well as vertebrate Nup98. The NUP C-terminal domains of Nup98 and Nup145 possess peptidase S59 autoproteolytic activity. The autoproteolytic sites of Nup98 and Nup145 each occur immediately C-terminal to the NUP C-terminal domain. Thus, although this domain occurs in the middle of each precursor polypeptide, it winds up at the C-terminal end of the N-terminal cleavage product. Cleavage of the peptide chains are necessary for the proper targeting to the nuclear pore.
Statistics
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PSSM-Id: 461171
Aligned: 175 rows
Threshold Bit Score: 107.193
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3KEP_A         19 SFGYWCSPSPEQLERLSLKQLAAVSNFVIGRRGYGCITFQHDVDLTAFtkSfREELfgkiVIFRSsKTVEVYPDE--AT- 95   baker's yeast
CBJ49271      805 LEEYKTEPSMAELAKMTKDALTAVSGFVVTRQGYGSIAWKEPVDLRGV--D-IGSV----VAIEH-KSVSVYDEL--AEg 874 
EED91206      652 KTGYNVYPPISELETMSEADLAAVADFKVERPGYGSVAWDGSVDVRGV--D-LDSV----VVIET-KNVSVYDDAelNGd 723 
XP_002180245  782 RKGYIISPTLEELEKTEDADLAAVSDFSVKRPGFGMVEWEGDVDVRGA--D-LDRI----ITIDQ-ADVSVYHAD--EAe 851 
XP_002141590  945 KPSYYCIPSIEALSTFTEDRLAAVEDFRVIREGVGEIMWPGLTDLRGL--N-LDHI----ISIEP-LCVSVYGED----- 1011
Q5CUL4        906 KHDYFCIPSIELLKTFSEERLAVVEDFKIVREGVGEIVWPGVTDLRGI--N-LDSV----VSIEP-LCVSVYGDG--DSs 975  Cryptosporidi...
CEM32306      825 NMEYSCTPSIESMREMTEQELASVQDFTIRRGGVGEARWPGRTDMRQV--N-LDRD----VKLEQ-GYIEVYPNE---At 893 
Q6BGM0        536 KPDYLCNVNFDEM---TEEELSNVENFTISNQ-FGQVRWLSPCNLLYL--D-LDKI----VDLTQ-ECINLYDSEivn-d 602  Paramecium te...
A0CZF0        557 KQGYYTLPDINQL---TINQLKNVEDFTIFNE-FGSLRWDSPTNLLYI--N-LDRI----VDIQD-SKVEVYDLDqih-e 623  Paramecium te...
XP_001032777  784 TSDYIINPPLEELQTYSLKELKNVHNFSVEGH-YGKLEWQEPVDLTDL--D-IDKT----IYIRD-QQIQVYPEVeya-s 853 
3KEP_A         96 --KP--XIGHGLNVPAIITLENVYPVDKKTKKPXKDTTKFaEFQ-VFDRKLRSX----REXNYISYNPFGGTWTFKVNHF 166  baker's yeast
CBJ49271      875 eeKP--ALGEGLNKPTRVTLYNIFPK-------AADPSDA-EKR-RYEARVSKNte-kIGAKLVSYDVDIGEWVFETFHW 942 
EED91206      724 --KP--RQGSKLNRPAVITMFGIYPK---GGAESSVEAKE-KLK-KKIEKSTKK----MGADLLSFDADGGVWTFRVGHF 790 
XP_002180245  852 gsKP--KVGSKLNRPAIITFYNIFPK---NGGANASKEEK---E-KHAKKVQRSta-kIGAEFMSYDRNNGVWKIRVLHF 921 
XP_002141590 1012 --DStiPVGEGLNKKAIILLKNCKPK------NISTSGNIeEFNaKRISQIKSYte-qMGATFISLDTVTWDWRFEVVHF 1082
Q5CUL4        976 --I---PIGEGLNKKAIITLKNCKPK---RAIPSKDPQEIdEFNsNRVKQIKSYte-qMGARFISLDTITWEWKFEVTHF 1046 Cryptosporidi...
CEM32306      894 --KP--EVGSKLNKRCEVMLKLGVDM-QENFASLKRQFDN-WRE-RAGERIRVAtervPAAHFINLNVDQLEWHFWVEHF 966 
Q6BGM0        603 ylKP--DIGKKLNKECEITFNLPANLKIN------------DAS-KFEQNLRQQae-gKNIEFLRFDSENRSYTFKVQHF 666  Paramecium te...
A0CZF0        624 ylKP--KVNKKLNKSCLITLKVPITINKD------------NYE-TEHKFLQQKck-eQNIELIEIDQIKQQFIVRVDHF 687  Paramecium te...
XP_001032777  854 kyKP--KVGEGINNKCMITYKNASSIQ--RKIKSGELNLQ-TVI-KCIKKQSDE----QNVQFVKFDQKNLTWTILVDHF 923 
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