2NMB,1WJ1,3F0W,1DDM


Conserved Protein Domain Family
PTB_Numb

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cd01268: PTB_Numb 
Click on image for an interactive view with Cn3D
Numb Phosphotyrosine-binding (PTB) domain
Numb is a membrane associated adaptor protein which plays critical roles in cell fate determination. Numb proteins are involved in control of asymmetric cell division and cell fate choice, endocytosis, cell adhesion, cell migration, ubiquitination of specific substrates and a number of signaling pathways (Notch, Hedgehog, p53). Mutations in Numb plays a critical role in disease (cancer). Numb has an N-terminal PTB domain and a C-terminal NumbF domain. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the Dab-like subgroup.
Statistics
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PSSM-Id: 241298
Aligned: 25 rows
Threshold Bit Score: 216.402
Created: 1-Nov-2000
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide bindingputative
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:
  • Structure:2NMB; Drosophila Numb binds a Phosphotyrosine peptide, contacts at 4A
    View structure with Cn3D
  • Comment:Phosphotyrosine peptide contains the Gly-Pro-(p)Tyr motif
  • Comment:Numb binds diverse peptide motifs
  • Citation:PMID 9846878
  • Structure:1DDM; Drosophila Numb binds Nak (Numb-associated kinase) peptide, contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                        #                                               
2NMB_A        16 HQWQADEEAVRsaTCSFSVKYLGCVEVFESRGMqVCEEALKVLRQSr-RRPVRGLLHVSGDGLRVVDDETKGLIVDQTIE 94  fruit fly
1DDM_A         1 HQWQADEEAVRsaTCSFSVKYLGCVEVFESRGMqVCEEALKVLRQSr-RRPVRGLLHVSGDGLRVVDDETKGLIVDQTIE 79  fruit fly
EFX85092      26 HQWQSDEAAVRagTCNFYVKYLGCVEVYESRGMpVCEEALKVLRNSr-RRPVKGVLHISGDGLRVVEEDTKGLIVDQTIE 104 common water flea
XP_001635000   9 QVWENDSYKVRngGVSFPVKYVGAIEVTESRGTqVCAEAFRKMREAgvHKKKRMNLLVTSDCIRVVDEETKSLTIDQTIE 88  starlet sea ane...
CBY25085      51 VEWLDDERKVNdgTCEFRVKYLGCAEVAEPRGIhHCEEAVKRHKLRrqRNKPRAVLVISPDAVRLVKEKSKQLILDQSIE 130 Oikopleura dioica
XP_002107983  27 SYWEEDSYKVKhgQIVFPVKYLGSLEVTKSRGTdICHEAAMAMMKN--HKRKKTSLVININGVRVTDENTKQLLLDQTVE 104 Trichoplax adha...
XP_003746739  25 QLWAADEIAVRqgDCSFHVKYLGSVEVFESRGMtVCEEALKTLRNSr-KRPVKGILYVTGDGLRVVDDETKDLILDQTIE 103 western predato...
XP_003243600  34 HLWAMDEAEVRagICSFHVKYLGCVEVFESRGMeVCEEALKTLRASr-RRPVRAIFYISGDGLRVVEEETKGLIVDQTIE 112 pea aphid
XP_003375087  81 DAWQADEIAVRsgTCSFNVKYLGSVEVYESRGMqVCEEAMKMLRSNrhQRAARGVLYVSGDGIRVVDVENKGLIVDQTIE 160 Trichinella spi...
XP_003425201  58 HQWQADEYAVRssTCAFDVKYLGCVEVNNQKGIqTCEEALKILRNSr-RRPIRAELHISGDGLRVVEHKTKGLIVDQIIE 136 jewel wasp
Feature 1           ####                                   #   #  #   #  
2NMB_A        95 KVSFCAPDrnheRGFSYICRDGTTRRWMCHGFLACKDSGERLSHAVGCAFAVCLER 150 fruit fly
1DDM_A        80 KVSFCAPDrnheRGFSYICRDGTTRRWMCHGFLACKDSGERLSHAVGCAFAVCLER 135 fruit fly
EFX85092     105 KVSFCAPDrnheKGFSYICRDGTTRRWMCHGFLASKDSGERLSHAVGCAFAVCLER 160 common water flea
XP_001635000  89 KVSFCTPDpsddRVFSYICREGTTRRWMCHCFIAIRDTGERLSHAVGCAFTACLQR 144 starlet sea anemone
CBY25085     131 KISFCAPDstyeAAFSYICRDGTTKRWMCYSFSSITKEGERLSNAFGSAFKACFEK 186 Oikopleura dioica
XP_002107983 105 KISFCTPDpkddRLFSYICRDGTSMKWLCHSFLTDKASGERISNALGSAFSESYLR 160 Trichoplax adhaerens
XP_003746739 104 KVSFCAPDrnyeKGFSYICRDGTTRRWMCHGFQAIKDSGERLSHAVGCAFAVCLER 159 western predatory mite
XP_003243600 113 KVSFCAPDrsheKGFSYICRDGLTRRWMCHGFVALKESGDRLSHAVGCAFQECLIR 168 pea aphid
XP_003375087 161 KVSFCAPDrnhdKGFAYICREGTTRRWMCHGFHAIRESGERLSHAVGCAFAVCLER 216 Trichinella spiralis
XP_003425201 137 GVSFCAFDrnheKGFSYICRDSTATRWMCHGFLALKESGKRLNHAVGCAFYASQER 192 jewel wasp

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