Conserved Protein Domain Family
TM4SF9_like_LEL

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cd03159: TM4SF9_like_LEL 
Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 9 (TM4SF9) or Tetraspanin-5 and related proteins. TM4SF9 is strongly expressed witin the central nervous system, and expression levels appear to correlate with differentiation status of particular neurons, hinting at a role in neuronal maturation.
Statistics
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PSSM-Id: 239412
Aligned: 13 rows
Threshold Bit Score: 172.995
Created: 9-Nov-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
dimer interface
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Comment:dimeric assembly observed in the crystal is predicted to resemble quaternary structure of intact CD81 at the cell surface

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #    #   # ##  #                   #  ##  ##                                   
CAG46628     113 FVFKDWIKDQLYFFINNNIRAYrd------diDLQNLIDFTQEYWQCCGAFGADDWNl----NIYFNCTDSnas-rerCG 181 human
XP_420654     96 FVFKDWIKDQLYFFINNNIRAYrd------diDLQNLIDFTQEYWQCCGAFGADDWNl----NIYFNCTDSnas-rerCG 164 chicken
AAH41304     152 FVFKDWIKDQLQFFINNNIRAYrd------diDLQNLIDFTQEYWQCCGAFGADDWNl----NIYFNCTDSnas-rerCG 220 African clawed ...
AAH02920      96 FLFQDWVRDRFREFFESNIKSYrd------diDLQNLIDSLQKANQCCGAYGPEDWDl----NVYFNCSGAsys-rekCG 164 human
CAG05130     113 VVFQSQVKEWFSEFFLDNIRGYrd------dsDLQNLIDSLQKMNHCCGAREPDDWDh----NVYFGCNETnls-rkkCG 181 Tetraodon nigro...
AAH86749     113 FVFKDWIKDQLKFFINNNIRAYrd------diDLQNLIDFTQDYWECCGAFGPEDWNl----NIYFNCTDTnls-rekCG 181 zebrafish
NP_001026389 113 VLFQDWVRDKVKEFFENNIKSYrd------diDLQNLIDSLQKINHCCGAQGPDDWDf----NIYFNCSSEsks-rekCG 181 chicken
AAH77230     113 FLFQDWVKDRAKDFFENNIKSYrd------diDLQNLIDSLQKANQCCGAVSPDDWDl----NEYFNCSIEnps-rerCG 181 African clawed ...
ABB36425     145 LKDKGWIKDQATEGLKAFIRHYred-----adQQNLIDWIQEDWLQCCGIDGPKDWDs----NNYFNCSSIaigsreaCG 215 fruit fly
CAF99157      94 LLKFFSVFLGLIFFLELTAGILafvf---kdwIKDQLNFFINNNWSCCGAHGPDDWNl----NIYFNCTDLnps-rerCG 165 Tetraodon nigro...
BAB15717     137 ALSQTALYSCSLGLFPNRVRLLg--------wAWLTWGSPLPPQWSCCGARGPNDWNl----NIYFNCTDLnps-rerCG 203 human
AAB94196     121 LVFFTLFYTDTTEGLSANWLLLyavknyhtnrNLAEIMDALQENLECCGVSSIAQGYrdwnmSYQFNCTNSnpq-pekCG 199 nematode
AAR24072     153 FVFKDWIRDQLNLFINNNVKAYrd------diDLQNLIDFAQEYWSCCGARGPNDWNl----NIRTSTALTsnpsrerCG 222 Norway rat
Feature 1                                                                                        
CAG46628     182 VPFSCCTKdpaedvintqcgyda--------------------------------------------------------- 204 human
XP_420654    165 VPFSCCTKdpaedvintqcgyda--------------------------------------------------------- 187 chicken
AAH41304     221 VPFSCCTKdpaedvintqcgydv--------------------------------------------------------- 243 African clawed ...
AAH02920     165 VPFSCCVPdpaqkvvntqcgydv--------------------------------------------------------- 187 human
CAG05130     182 VPFSCCIFdpadtvvnsqcgydv--------------------------------------------------------- 204 Tetraodon nigro...
AAH86749     182 VPFSCCTKdpaedvintqcgydi--------------------------------------------------------- 204 zebrafish
NP_001026389 182 VPFSCCVPdpaqkvvntqcgydv--------------------------------------------------------- 204 chicken
AAH77230     182 VPFSCCVPdpaqtvvntqcgyda--------------------------------------------------------- 204 African clawed ...
ABB36425     216 VPFSCCRRrpqeviknkqcgydv--------------------------------------------------------- 238 fruit fly
CAF99157     166 VPFSCCVKdpaedvintqcgydvrhkvlvpgrkrgragdvgrgaaqlrpraeialediyrqnnivfpaclglflrlpvas 245 Tetraodon nigro...
BAB15717     204 VPFSCCVRdpaedvlntqcgydv--------------------------------------------------------- 226 human
AAB94196     200 VPFSCCRKsviseaagssnpllpamrsle----------------------------------------------cwqna 233 nematode
AAR24072     223 VPFFCWVRtlrktsqypcgyt----------------------------------------------------------- 243 Norway rat
Feature 1                                     
CAG46628     205 rqkpevdqqiviytkGCVPQFEKWLQDNL 233 human
XP_420654    188 rqkpevdqqiviytkGCVPQFEKWLQDNL 216 chicken
AAH41304     244 rqkpeldqqetihtkGCVPQFEKWLQDNL 272 African clawed frog
AAH02920     188 riqlkskwdesiftkGCIQALESWLPRNI 216 human
CAG05130     205 rkkpkaewanhiytkGCIAALEDWLPRNL 233 Tetraodon nigroviridis
AAH86749     205 rgkgdiehktfihtkGCVPQFEKWLQENL 233 zebrafish
NP_001026389 205 rkkskshwddqifikGCIVALEAWLPRNI 233 chicken
AAH77230     205 rkkkpnerpnttfskGCISAMEAWLPRNI 233 African clawed frog
ABB36425     239 -rkegypvdrniherGCLRAGEDWLEAHL 266 fruit fly
CAF99157     246 isskelerqkhiytkGCVGQFEKWLQDNL 274 Tetraodon nigroviridis
BAB15717     227 rlkleleqqgfihtkGCVGQFEKWLQDNL 255 human
AAB94196     234 ltkrpgdlehdiytrGCLQPLRTLFESHA 262 nematode
AAR24072     244 --saqtelehkihlhQSWWPFEKWLKKPD 270 Norway rat

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