1EQQ,1UE1


Conserved Protein Domain Family
ssb

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TIGR00621: ssb 
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single stranded DNA-binding protein (ssb)
All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]
Statistics
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PSSM-Id: 273179
Aligned: 17 rows
Threshold Bit Score: 156.04
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1EQQ_A     3 SRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKAt-----GEMKEQTEWHRVVLFGK-LAEVASEYLRKGS 76  Shigella flexneri
P71711     1 MAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQt-----GEWKDGEALFLRCNIWReAAENVAESLTRGA 75  Mycobacterium tuber...
P37455     1 --MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQS--------GEREADFINCVTWRR-QAENVANFLKKGS 69  Bacillus subtilis s...
AAA79866   1 --MINRVVLIGRLTRDVELRYTQSGTAVGTFSLAVNRQFTNQA--------GEREADFINAVIWRK-AAENFANFTGKGA 69  uncultured bacterium
Q55499     1 -MSVNSIHLVGRAGRDPEVKYFESGNVVCNFTLAVNRRTSKKD--------EPP--DWFDLEIWGK-TAEIAGNYVKKGS 68  Synechocystis sp. P...
P28042    27 ERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDneayqmGDVSQKTTWHRISVFRPgLRDVAYQYVKKGA 106 Norway rat
Q04837    27 ERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDsevyqlGDVSQKTTWHRISVFRPgLRDVAYQYVKKGS 106 human
CAA76674   1 --MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANG-------EKREETCFIDISFYGR-TAEVANQYLTKGS 70  Campylobacter jejuni
O25841     1 --MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQD------GTLGEEVCFIDARLFGR-TAEIANQYLSKGS 71  Helicobacter pylori...
O66475     1 --MLNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQN------GEFQEESHFFDVKAYGK-MAEDWATRFSKGY 71  Aquifex aeolicus VF5
1EQQ_A    77 QVYIEGQLRTRKWTDQ-SGQDRYTTEVVVNVG-GTMQMLg--G--R-QGGGaPAGGNIGG--------GQPQGg------ 135 Shigella flexneri
P71711    76 RVIVSGRLKQRSFETR-EGEKRTVIEVEVDEIgPSLRYAt--A--KvNKASrSGGFGSGS--------RPAPa------- 135 Mycobacterium tuber...
P37455    70 LAGVDGRLQTRNYENQ-QGQRVFVTEVQAESV-QFLEPKngg--gsgSGGYnEGNSGGGQyfgggqndNPFGgn------ 139 Bacillus subtilis s...
AAA79866  70 LVAIEGRLQTRNYENN-QGQRVYVTEVVVDNF-SLLESRaesdkrRaQNGSsEPSHQGGAsfga-psdNAFGGvdpfasa 146 uncultured bacterium
Q55499    69 LIGIQGSLKFDHWEDRnSGTPRSKPVIRVN----NLDLLg--S--KrDNAEaTMNNYPEEf------------------- 121 Synechocystis sp. P...
P28042   107 RIFVEGKVDYGEYMDK-NNVRRQATTIIADN---IIFLSd-------QAREkPLNG------------------------ 151 Norway rat
Q04837   107 RIYLEGKIDYGEYMDK-NNVRRQATTIIADN---IIFLSd-------QTKEkE--------------------------- 148 human
CAA76674  71 KVLIEGRLRFEQWSDQ-NGQNRSKHSIQVENMeMLGNSN---A--PqQGGNfGNNSFSNNnysgnyenQSYDPym----- 139 Campylobacter jejuni
O25841    72 SVLIEGRLTYESWMDQ-TGKKNSRHTITADSL-QFMDKKsdnP--QaNAMQdSIMHENSNnaypanhnAPSQDpfn---- 143 Helicobacter pylori...
O66475    72 LVLVEGRLSQEKWEK--EGKKFSKVRIIAEN--VRLIN-------RpKGAElQAEEEEEv--------PPIEe------- 125 Aquifex aeolicus VF5
1EQQ_A   136 ---WGQPQqPqggnqfsGGAQSRPQQS-----------ApaapsNEPPMDFDDDIPF 178 Shigella flexneri
P71711   136 --qTSSASgD-------DPWGSAPASG-------------------SFGGGDDEPPF 164 Mycobacterium tuberculosis
P37455   140 -qnNQRRNqG-------NSFNDDPFANdg----------------kPIDISDDDLPF 172 Bacillus subtilis subsp. subtilis str. 168
AAA79866 147 sqaNPQATtP-------TNDAPNPFAAsg---------------ktEIDISDDDLPF 181 uncultured bacterium
Q55499       ---------------------------------------------------------     Synechocystis sp. PCC 6803 substr. Kazusa
P28042       ---------------------------------------------------------     Norway rat
Q04837       ---------------------------------------------------------     human
CAA76674 140 --sENQNFnK-------AKANPAPQRNqnpqheeklkeId----IDAYDSDDTNLPF 183 Campylobacter jejuni
O25841   144 qayAQNAYaK-------ENLQAQPSKYqn--------------sVPEINIDEEEIPF 179 Helicobacter pylori 26695
O66475   126 ---EIEKLgK-------E--EEKPFTD---------------------E--EDEIPF 147 Aquifex aeolicus VF5
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