2NBQ


Conserved Protein Domain Family
NAD2

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pfam18782: NAD2 (this model, PSSM-Id:408553 is obsolete and has been replaced by 436733)
Novel AID APOBEC clade 2
A distnct family of AID/APOBEC deaminases found only in Amphibians.
Statistics
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PSSM-Id: 408553
Aligned: 11 rows
Threshold Bit Score: 219.552
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2NBQ_A         6 YLMDPDTFTFNFNn---DPL-VLRRRQTYLCYEV-ERLD--NGTWv-lMDQHMGFLCNEaknllcgfYGRHAELRFLDLV 77 
XP_011887350  21 KRMKTGIFVSNFNn---KPI-LSGRNTVWLCCEV-KTKDpsGPPLd--AKIFRGKVYSK--------AKYHPEMRFLRWF 85  sooty mangabey
NP_001233159  10 ERMYQRTFYYHFEn---KPI-LYGRSYTWLCYEV-KIRK--DPSK---LPWDTGVFRGQvysk----pehHAEMCFLSRF 75  Rhesus monkey
XP_018874149  10 ERMYRGTFSYNFNn---RPI-LSRRNTVWLCYEV-KTKG--PSRP----PLDAKIFRGQvy----fqPQYHAEMCFLSWF 74  western lowland...
XP_011819594  10 ERMYRRTFYVNFEn---EPI-LYGRRYTWLCYEVkISKDpsKLPWdtgIFRGQVYFEPQ----------YHAEMCFLSWY 75  Colobus angolen...
NP_001153887 234 DPLSEEEFYSQFYnqrvKHLcYYHRMKPYLCYQL-EQFN--GQAP------LKGCLLSEk-------GKQHAEILFLDKI 297 house mouse
Q694C1       195 HSMDPPTFTSNFNn---EHW-VRGRHETYLCYEV-ERLH--NDTWv-lLNQRRGFLCNQaphkhgflEGRHAELCFLDVI 266 western lowland...
XP_015005832 204 EATYPHIFYFHFKn---LRK-AYGRNETWLCFTM-EIIK--QHST---VSWETGVFRNQvd----peSRCHAERCFLSWF 269 Rhesus monkey
XP_013008555  31 DCLYQSTFYFHFEn---LPN-ADGRHKTFLCFEV-KNR----NEVl-----HKGFFLNQpsp-----frLHAELSFLSWF 91  domestic guinea...
XP_012966578  33 KMLYERTFYFHFKn---LHY-ANGRKNTFLCFEV-NRME--CGEL---VPLCQGVFRKEs-------SNLHAEVCFLYWF 95  golden hamster
NP_001233160  11 HLMDPNTFTFNFN----NDLsVRGRHQTYLCYEV-ERLD--NGTWv-pMDERRGFLCNKaknvpcgdYGCHVELRFLCEV 82  Rhesus monkey
2NBQ_A        78 ps---lQLDPAQIYRVTWFISWSPCFSwgCAGEVRAFLQENTHVRLRIFAARIY-DY-DPL--YKEALQMLRDAG----A 146
XP_011887350  86 lk--wrQLHRDQEYEVTWYVSWSPCTG--CANSVATFLAKDPKVTLTIFVARLYyFW-KPD--YQEALRVLCQKRgsphA 158 sooty mangabey
NP_001233159  76 cg---nQLPAYKRFQITWFVSWNPCPD--CVAKVIEFLAEHPNVTLTISTARLYyYW-GRD--WQRALCRLRQAG----A 143 Rhesus monkey
XP_018874149  75 cg---nQLPAYKCFQITCFVSWTPCPD--CVAKLAEFLAEHPNVTLTISAARLYyYW-ERD--YRRALRRLRQAG----A 142 western lowland...
XP_011819594  76 cg---nQLPAYKCFQITWFVSWTPCPD--CVGKVAEFLAEHPNVTLTISAARLYyYW-ETD--YRRALCRLRQAG----A 143 Colobus angolen...
NP_001153887 298 r-----SMELSQ-VTITCYLTWSPCPN--CAWQLAAFKRDRPDLILHIYTSRLYfHWkRP---FQKGLCSLWQSG----I 362 house mouse
Q694C1       267 pf---wKLDLHQDYRVTCFTSWSPCFS--CAQEMAKFISNKKHVSLCIFAARIY----DDQgrCQEGLRTLAEAG----A 333 western lowland...
XP_015005832 270 ce---dILSPNTDYRVTWYTSWSPCLD--CAGEVAEFLARHSNVKLAIFAARLYyFW-DTH--YQQGLRSLSEKG----A 337 Rhesus monkey
XP_013008555  92 hd---teLSFDENYKVTWYMSWSPCPE--CAKEIVTFLDNHHNVTLTIYVARLYyHW-NPT--YKEGLRALVQGG----T 159 domestic guinea...
XP_012966578  96 htqvlgMLPPGEKYKITWYMSWSPCSE--CAAEVTRFLDTHRNLSLAIFSSRLYyFW-KSD--YQDKLRRLNQAG----A 166 golden hamster
NP_001233160  83 ps---wQLDPAQTYRVTWFISWSPCFRrgCAGQVRVFLQENKHVRLRIFAARIY-DY-DPL--YQEALRTLRDAG----A 151 Rhesus monkey
2NBQ_A       147 QVSIMTYDEFEYCWDTFVYRQGCPFQPWDGLEEHSQALSGRLRAIL 192
XP_011887350 159 TMKIMNYNEFQHCWNKFVRGRREPFEPWENLPKHYTLLHATLGELL 204 sooty mangabey
NP_001233159 144 RVKIMDYEEFAYCWENFVYNEDQSFMPWYKFNDNYAFLHRMLKEIL 189 Rhesus monkey
XP_018874149 143 RVKIMDDEEFAYCWENFVYSEGQPFMPWHKFDDNYAFLHRTLKEIL 188 western lowland gorilla
XP_011819594 144 RVKIMDDEEFAYCWENFVYNegqPFMPWDKFDDNYAFLHSKLKEIL 189 Colobus angolensis palliatus
NP_001153887 363 LVDVMDLPQFTDCWTNFVNP-KRPFWPWKGLEIISRRTQRRLRRIK 407 house mouse
Q694C1       334 KISIMTYSEFKHCWDTFVYHQGCPFQPWDGLEEHSQALSGRLQAIL 379 western lowland gorilla
XP_015005832 338 SVEIMGYKDFKYCWENFVYNGDEPFKPWKGLKYNFLFLDSKLQEIL 383 Rhesus monkey
XP_013008555 160 RLYTMAFPEFEDCWSLFVCN--ETFRPWENFHKCCSLQDKTLQKIL 203 domestic guinea pig
XP_012966578 167 QIAAMDFPEFEKCWNKFVDNDGKSFRPWKRLKINFRNQDSTLWDIL 212 golden hamster
NP_001233160 152 QVSIMTYEEFKHCWDTFVDRQGRPFQPWDGLDEHSQALSGRLRAIL 197 Rhesus monkey
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