Conserved Protein Domain Family
SSDP

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pfam04503: SSDP 
Single-stranded DNA binding protein, SSDP
This is a family of eukaryotic single-stranded DNA binding proteins with specificity to a pyrimidine-rich element found in the promoter region of the alpha2(I) collagen gene.
Statistics
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PSSM-Id: 461334
Aligned: 15 rows
Threshold Bit Score: 101.957
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EDV91149      81 DHSSEAKAFHDYGFVSSgygvngigpggphnagGPAPSP-LAQMPPgGDGgpmGPGGPMGPn-fFPnst-mrpSPPT-HA 156
XP_002402581  81 EHSSEAKAFHDYGFVNSgyavn------giahnPSAPSP-LGQMPP-SDG---MPGGPMPPggfFP-------------- 135
XP_001954918  81 DHSSEAKAFHDYGFVSSgygvngigpggphnagGPAPSP-LGQMPPgGDGgpmGPGGPMGPg-fFPnst-mrpSPPT-HA 156
OWR49908      81 EHSSEAKAFHDYGFVNSgygvng-----ighnaGPA--------PP-NDG---MGGGGMPPg-fFPnss-lrpSPPApHP 141
EFA11526      81 EHSSEAKAFHDYGFVNSgygvng-----iahntGPAPSP-LGQMPP-ADG---MPGGPIPPg-fFPnst-mrpSPPT-HP 147
EGI69542      69 EHSSEAKAFHDYGFVNSaynvng-----iahnaGPAPSP-IGQMPP-NDG---MPGGPMPPa-fFPnnstmrpSPPT-HP 136
XP_001947875  81 EHSSEAKAFHDYGFVNSgygvng-----iahnaGPSPSP-LGQMPP-NDG---MPGGPMPGg-fFPnss-mrpSPPS-HP 147
AAI68053      81 EHSSEAKAFHDYSA-------------------AAAPSPvLGNMPP-GDG---MPVGPVPPg-fFQ-------GPPG--- 126
NP_001098456  81 EHSSEAKAFHDYSA-------------------AAAPSPvLGNIPP-NDG---MPGGPIPPg-fFQ-------GPPG--- 126
XP_022615258  81 DHSSEAKAFHDYSA-------------------AAAPSPvMGGMPP-GEG---MPGGPMPPg-fFQ-------GPPG--- 126
EDV91149     157 SS------PQPPP---------------------SQMMP-GQPp---FMgGPRYPGGPR-PGVRMQGMGNEFNGP---PG 201
XP_002402581 136 --------VSPLPhrfscfldcgnlslvlfdaslTMLFL-SQP----FM-SPRYPGGPR-PGVRMPQQ-VDFNPPggvPG 199
XP_001954918 157 SS------PQPPP---------------------SQMMPgQPP----FMgGPRYPGGPR-PGVRMQGMGNEFNGP---PG 201
OWR49908     142 GSqpsphgPQPQ-----------------------LMGT-GQP----FI-GPWYSGGPR-TAVRM-GMGNDFNGP---PG 187
EFA11526     148 SSqps-phSQPPPp-------------------hTQMMS-AQP----FM-GPRYPAGPR-PGVRMPQIASDFNGP---PG 197
EGI69542     137 SSqpspqhPQPPPp-------------------hTLSLM-KNHlfrcFM-GPRYPAGPR-PGVRMPQMGNDFNGP---PG 191
XP_001947875 148 SAqqs-phSQPPs--------------------hGQMLS-NQP----FM-GPRYPGGPR-PGIRMSQLGNDFNSP---TG 196
AAI68053     127 -Sqls-lhAQHLPhnl----------------snSMIGPqNQP----FM-SPRYPGGPR-PPLRIPNQ--GLGGV---PG 177
NP_001098456 127 -Sqps-phAQPPPhn-----------------psSMMGPhSQP----FM-SPRYAGGPR-PPIRMGNQ-----PPggvPG 176
XP_022615258 127 -Pqgs-phPQPPPp-------------------nSMMGPhSQS----FM-SPRFAGGPRgPPIRMANQ-----PPgggPG 175
EDV91149     202 -QPMMPNSMDPtrpgpgg--------gmgpmnPRMNPPRGP---GMGPM----GYGGPgGMRGPAPG---GP-GG----- 256
XP_002402581 200 -QPMMPNSMDPtrqgkfss-----pptmnpmnPRMNPPRGQ---PLGPMn--pGNYG--GMR-PPPNstmGP-GGp---s 261
XP_001954918 202 -QPMMPNSMDPtrpggg----------mgpmnPRMNPPRGPg--GMGPM----GYGGPgGMRGPAP----GP-GG----- 254
OWR49908     188 -QGMMSNSLERgsgm--------------lggPRMTPPR-P---GMGPMs--pGAYAA-GMRGPPPQ---AP-G------ 235
EFA11526     198 -QPMMPNNMDPtrqgpp----------gmnpmnRMNPPRGP---SMGPLg--pGTYGP-SLRGPPPNsslGP-GGp---- 255
EGI69542     192 -QPMMPNSMDPtrqgpp---------gmnpmnPRMNPPRGP---GMGPMg--pGSYGP-GMRGPPPNstlGP-GGpggpg 254
XP_001947875 197 -QPMMPG-MDPlrqgeageyvvgwqggmgpmnPRMNPPRGQntqNMSPL----GSYSP-GMRGPPPNttlGPgGGgggpn 269
AAI68053     178 sQTLLPSGMDPsrqqghp--------nmagpmQRMSGPRG-----MVPLg--pQSYGG-GMR-PPLNalgGP-A------ 233
NP_001098456 177 tQPLLPNSMDPtrqqghp--------nmggsmQRMNPPRG-----MGPMgpgpQNYGS-GMR-PPPNs-lGP-A------ 233
XP_022615258 176 pHPMLPN-MDPtrpqgh---------pnlgpmQRMSGPRG-----MGPMgpgpQNFGG-GMR-PPHNt-mGP-G------ 230
EDV91149     257 MPPMGMgGGGGRPPQWQPNA------SAPMNaYSSSSPGN-YGPGPgs-ngPPGPgTPIMPSPQDNTQGgpvggpGDSMy 328
XP_002402581 262 MPPMP--GPGGR--PWQPNA-------SSMN-YSSASPGShYGGPPvsgsgPPGPgTPIMPSPQDSSNSg-----GDGMy 324
XP_001954918 255 MPPMGMgGAGGRPPQWQPNA------SAPLNaYSSSSPGN-YGPGPgs-ngPPGPgTPIMPSPQDNTQGgpvggpGDSMy 326
OWR49908     236 MPPMGM-GPRGA---WAGGSggagggSAPLN-YSGGSPGA-YGAPPgs-ngPPGPpTPIMPSPQDSSNSg-----GDNMy 303
EFA11526     256 MPPMSMtGPGGR-PQWQPNT------STPMN-YSSSSPGN-YGGPPgs-agPPGPgTPIMPSPQDSSNSg-----GENMy 320
EGI69542     255 MPPMSMaAPGGR-QQWQPNT------STPMN-YSSSSPGN-YGGPPgs-tgPPGPgTPIMPSPQDSSNSg-----GENMy 319
XP_001947875 270 MP-LSMgGLVGR-PQWQPNA------NTPMS-YSSSSPGA-YGGPSgs-ggPPGPgTPIMQSPQDSSNSg-----GESMy 333
AAI68053     234 MPGMNM-GPGGGRPWPNPGN------ANSIP-YSSASPGN-YVGPPgg-ggPPG--TPIMPSPADSTNS------GDNMy 295
NP_001098456 234 MPGINM-GPGAGRPWPNPNS------ANSIP-YSSSSPGT-YVGPPgg-ggPPG--TPIMPSPADSTNS------SDNIy 295
XP_022615258 231 MPGVNM-GPGTGRPWPNPNN------ANSMP-YSSPSPGA-YGGASgg-ggPPG--TPIMPSPADSNNS------GDNLy 292
EDV91149     329 slmkpefpmggggpdgsgggggggGPGGMGPMggGPNSmgp----vlNGGGGGPDGTGLDGm-KNSPA-----NGGPGTP 398
XP_002402581 325 ammkpfq----------mgpggpdGP--MGSM--GPDMgpp----vmNGMSSA--GDGLDGm-KNSPA------NGPGTP 377
XP_001954918 327 almkpefpmg----ggpdggggggGPGGMGPMggGPNSmg-----pvLNGGGGPDGTGLDGm-KNSPA-----NGGPGTP 391
OWR49908     304 tlmkpvga------------algaefplAGEH--GPSSqhlpqpptsEGLG------GVDGm-KASPGgv--gGGGPGTP 360
EFA11526     321 tlmkpavgg-----nmpgefqmggGP-EGGPM--GPMGp--------NSMGPVLNGDGMDGm-KNSPA-----NGGPGTP 378
EGI69542     320 timkpvpggnm-pgdfpmsggpegGP--MGPM--GPNTmgp----vlN-------GDGLDGm-KNSPA-----NGGPGTP 377
XP_001947875 334 tmmkpvtggnm-pgdfpmnnasdsGP--LGPM--GPNTmns----vlN-------GEGLDGm-KNSPA-----PGGPGTP 391
AAI68053     296 tlmnavpp-------ggnrpnfpmGPGSDGPMs-GLGGme------pHHINGSLGSGDMDSisKNSPNnm-nlSNQPGTP 360
NP_001098456 296 tminpvpp-------ggsrsnfpmGPGSDGPM--GGMGgm-----epHHMNGSLGSGDMDGlpKNSPNnisgiSNPPGTP 361
XP_022615258 293 tmintgp---------gnrnnfpmGPGSD-----GPLGamag--mepHHMNGSLGSGDMDGmnKNSPNnlsgiSNPPGTP 356
EDV91149     399 REDS 402
XP_002402581 378 REDG 381
XP_001954918 392 REDS 395
OWR49908     361 REDS 364
EFA11526     379 REDS 382
EGI69542     378 REDS 381
XP_001947875 392 REDS 395
AAI68053     361 RDDG 364
NP_001098456 362 RDDG 365
XP_022615258 357 RDDG 360
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