Conserved Protein Domain Family
Prefoldin_URI1

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cd23159: Prefoldin_URI1 
RNA polymerase II subunit 5-mediating protein homolog
URI (also called RNA polymerase II fifth subunit regulatory protein or RMP) is an alpha subunit of prefoldin-like complex (PFDL). PFDL is involved in the cytoplasmic assembly of RNA polymerase II and can interact with other chaperone complexes, like R2TP to form the PAQosome. In the cytoplasm, URI acts as a chaperone protein; in the nucleus, URI acts as a transcription regulator and can interact with RPB5 (a subunit of eukaryotic RNA polymerases) and RNA polymerase II (pol II). Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related.
Statistics
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PSSM-Id: 467475
Aligned: 156 rows
Threshold Bit Score: 91.844
Created: 4-Mar-2021
Updated: 27-Apr-2023
Structure
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Aligned Rows:
 
Feature 1:putative prefoldin oligomer interface [polypeptide binding site]
Evidence:
  • Comment:based on prefoldin complex structures
  • Comment:forms a hexamer composed of two alpha and four beta subunits

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                   #  ##  ## ##     ######## ##########  #####   ###### 
ELU17218       9 LQRLREEQSDAVRETQDKMAKLESFKRDYESLKQRLKTLPEKVTHDVMVPFGrLAFMPGQLIHtNEIMVLLGDNWFVERS 88  Capitella teleta
Q54HG4         3 SQEIFKKYEQKVVEYQDHIEELKSTKNDYKQLIDTLQHLPDTLQPKIMVPMGkLAFFEGNLKNtNEILILLGDNYFAKRS 82  Dictyostelium d...
XP_003294220   2 NQELQRRYEEKIFEYEEHIKSLQGTKNEYRELINTLSELPNTLQPKIMVPLGkLAFFEGNIKStNEILILLGDNYFAKRS 81  Dictyostelium p...
XP_012749697  14 REDPRLKYNIKIKEFQDHIGSLNDTKKQYQVLIERLTTLPDQLTHKINVPLGkMAFFEGHIYNsNEIMILLGDNYFAERS 93  Acytostelium su...
KYQ93214      19 QQELFKKYQLKCQEYQGYIEQLQETNKEYDQLIERLRTLPEKLKHEIMVPMGkKAFFEGTIKNsNQVLLLLGDNYFTKRS 98  Tieghemostelium...
XP_020430006  18 QQLIRDKYKNKIEELNIHLKQLNVTKNEYQKLIEKLKVMPDTLSQKVHVPLGrYAFFEGTVTNtNEIMILLGDNYFAERS 97  Heterostelium a...
TRY49810       2 VITDSSIIYKNKEILENEISGLNSMISEFQQVSQVLNRLPNKVQHEIMVPLGpLAFSPGYIINtNKVLMLLGSDLYAERT 81  Cryptosporidium...
VEV56763      12 VKGGTERILLKLKNEKINEDILKRTIKEYEETLDVLSVLTKKLNYKIMIPFSkMAFFEGEVKYtNNIYQDIGCNTYCERT 91  Plasmodium vinc...
XP_008815334  12 IQGATKRLLLKIKNEKKNEEIIKKTIDEYKQTIEVISTLTKKLNHRIIIPFSkVAFYEGEIKYtNNIYQDIGCNTYCERT 91  Plasmodium inui...
XP_001351945  13 IEKATQRLFLKLKNEKIKEDILRKSINEYKETINIVKNLTKKINYKIIIPFSkLAFYEGEIKYtNNIYQNIGCNTYCERT 92 
Feature 1               #                                    
ELU17218      89 AKQATDILCRRMQGLDEQIADLNKQLNLLNPRLDFTSQLQELNQ 132 Capitella teleta
Q54HG4        83 SKQTIDIIQRRDKDIDTSINDLREQIKGLKQRVSMTTDLSKALH 126 Dictyostelium discoideum
XP_003294220  82 TKQTIDIIQRRDTDINNNIKDLNEQILALKQRATLSSDLAKSVL 125 Dictyostelium purpureum
XP_012749697  94 CKQTIDIIRRREKDIDDSITNINLQLDSLNQRLELTTNLSKYIK 137 Acytostelium subglobosum LB1
KYQ93214      99 SKQSRDILMRRRKDVTDQINQLKQEIAILSDRKSLTQHISTALS 142 Tieghemostelium lacteum
XP_020430006  98 CKQTIDIIQRRDNDIDFSIKNINQQIQSLQQRFEITTNLSKYLQ 141 Heterostelium album PN500
TRY49810      82 TFESQKTIKRRLSQAEDCLETMKKNLSKIEEALKLKDEFSIDIK 125 Cryptosporidium tyzzeri
VEV56763      92 SYQAYEFLKKKLTFYQDKYKIVSNSINKLTKELELSLELTHTMK 135 Plasmodium vinckei vinckei
XP_008815334  92 TEKAKDLLERKLKFYQDKYTIVQESLTKLTKELDLSLELNFHSN 135 Plasmodium inui San Antonio 1
XP_001351945  93 SENAHKYLEKKLDAYEKKYKIISDDIDKLTKEIQLALELEQTSN 136

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