2GRY,2HEH,1V8J,3J2U,1RY6


Conserved Protein Domain Family
KISc_KIF2_like

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cd01367: KISc_KIF2_like 
Click on image for an interactive view with Cn3D
Kinesin motor domain, KIF2-like group
Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Statistics
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PSSM-Id: 276818
Aligned: 18 rows
Threshold Bit Score: 386.266
Created: 1-Nov-2000
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ATP bindingmicrotubule
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:interaction site for Mg ADP, ATP hydrolysis drives motor function
  • Citation:PMID 9485302

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #                                                                       
2GRY_A      90 RICVCVRKRPLNkketqmkdlDVITIPSk-dVVMVHepKQKVDLTRYle---nQTFRFDYAFDD----SAPNEMVYRFTA 161  human
AAR39437   453 RIRVCVRKRPLNkkeiaksekDIIEVLPk-kDLIVNepKTKLDLSKFie---kHKFTFDGVFDE----SANNYQVYLHTA 524  Dictyostelium di...
BAB02671   169 KIKVVVRKRPLNkkestkneeDIVDTHAn--CLTVHetKLKVDLTAYve---kHEFVFDAVLDE----EVSNDEVYRETV 239  thale cress
AAH67395   182 KIRVCVRKRPLGvrevrrgevNVITVEDk-eTLLVHekKEAVDLTQYil---qHVFYFDEVFGE----ACSNQDVYLKTA 253  house mouse
EAK89501    29 KITVVVRKRPLTdneisrndvDVVEAVCnenTIYVHelKTKVDCTKYid---kHSYTFDRVYSE----QINNRELYEDII 101  Cryptosporidium ...
EAA22720    17 KIKVVVRKRPINenekrkkdsDIVTVKDn-hTICIDepRYKVDMTKYie---rHEFIVDKVFDE----TVDNLTVYQYSI 88   Plasmodium yoeli...
Q39493      95 NICIAVRKRPISdkerqkldhDSVSCFQn--KVWIHsaKLKVDGITKyl--thNSFQLDHTFGE----DSTTEQIYLATT 166  Cylindrotheca fu...
NP_586353  174 KIVVCVRKKPCSnp-----kmDVVDIEGr--SVVVNeeKFRVDLRPYve---qYRFEFDYSFDG----SQKNMDVYRGCV 239  Encephalitozoon ...
AAS46035    35 VVKVYIRKRPTFerevnageyDVVTCRPh--EIIVH--DCRMHPSMKpslayvESFKFPYPNTEvfgeRSTTEELYRSAV 110  Naegleria gruberi
EAK87200     4 DFTVLFRIRPSFlpts-pstpPLISTDSahtLTTVLepRTNVHTSSTht---aHTFSSDGCFLA----SSSTSDLYSSHV 75   Ustilago maydis 521
Feature 1                         #  # ####                                                    
2GRY_A     162 RPLVETIFE-RGMATCFAYGQTGSGKTHTMggdfsgk-------nqdcskGIYALAARDVFLMLkkpnykklelQVYATF 233  human
AAR39437   525 YPLVDSIFH-KGKATCFAYGQTGSGKTHTQmgq--------------qgdGLYALAARDIFHRLetyf--kdqlQVCISF 587  Dictyostelium di...
BAB02671   240 EPVVPLIFQ-RIKATCFAYGQTGSGKTYTMk-------------------PLPLKASRDILRLMhhtyr-nqgfQLFVSF 298  thale cress
AAH67395   254 HPLIQHIFN-GGSATCFAYGQTGAGKTYTMigth-------------qnpGLYALAAKDIFRQLkvsqs-rrnlFVWISF 318  house mouse
EAK89501   102 RPLTENIFTpGFKCSCFAYGQTGSGKTYTMmgsentaysnslqrkterelGIFELAVNNIFELLeqse--henkEVYVSF 179  Cryptosporidium ...
EAA22720    89 KPLIIDIFEnNCVCSCFAYGQTGSGKTYTMlgsqpy--------gqsncpGIFQYASEDIFNFLntynn-dnskGIFISF 159  Plasmodium yoeli...
Q39493     167 LPLVDHVVStQGRATVFCYGQTGSGKTYTMn-------------------GIQQILAYDLYGQLaeht---ddlEITVAF 224  Cylindrotheca fu...
NP_586353  240 KSIVNHVIS-GGLGTILAYGQTGTGKTYTMler---------------dtGMMYLAIKDLMAFKs---------HGAVTF 294  Encephalitozoon ...
AAS46035   111 KPLIQFVAA-GNVGTMFCFGQTGSGKTYTIt-------------------GLVKMLSQELFSLIaklp---gtySVTATC 167  Naegleria gruberi
EAK87200    76 DSLIPFVLC-GGYATVLAYGQTGSGKTHTLs-------------------ECSRLAIASLFRQNqa------kcHVTLQA 129  Ustilago maydis 521
Feature 1                                                                                      
2GRY_A     234 FEIYSGKVFDLLnr--ktKLRVLEdgkQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILR 311  human
AAR39437   588 FEIYGGKLFDLLne--rkKLACREnelQNVVIVGLSEKHVTSPQELMNCIIDGNKIRSTGSTGVNSDSSRSHAILQISLK 665  Dictyostelium di...
BAB02671   299 FEIYGGKLYDLLse--rkKLCMREdgkQQVCIVGLQEYRVSDTDAIMELIERGSATRSTGTTGANEESSRSHAILQLAIK 376  thale cress
AAH67395   319 YEIYCGQLYDLLnr--rkRLFAREdskHVVQIAGLRELQVDSVELLLQVILKGSKERSTGATGVNADSSRSHAIIQIQIK 396  house mouse
EAK89501   180 FEIYCDKLYDLLnn--qkLVSAMEnskREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAILQIEIR 257  Cryptosporidium ...
EAA22720   160 YEIYCGKLYDLLqk--rkMVAALEngkKEVIVKDLKILRVINKDELIQKMIEGVMLRKIGVNSQNDESSRSHAILNIDLK 237  Plasmodium yoeli...
Q39493     225 FELYSGNVLDLLhg--cqRCKLLEdgnGEVNITGLREVPAPTPEAFLQVIEEGHSLRTTQKTEANDASSRSHAICQVFLR 302  Cylindrotheca fu...
NP_586353  295 CEIYMGQVYDLLdn--gkRVQLREv-nGIVHLSNSREEKFEGYEEALEIIEKGMSLRKTGVTGANSKSSRSHAVILVNFS 371  Encephalitozoon ...
AAS46035   168 IELIGENCFDLLse--hqEVQLRDgktGDVVICGNKLCALTSGSELNELYNYAAGLRETHATKVNSTSSRSHYICRVYIE 245  Naegleria gruberi
EAK87200   130 IEIYGKSKVNDLfdrtntRVLIAEniaGSSTFAKATTKPIRSAESMLEEVESAWSQRMTRGTEKNPQSSRSHALIRIICQ 209  Ustilago maydis 521
Feature 1                                   #                                                  
2GRY_A     312 rkg-----------------klhGKFSLIDLAGNERGADTss----------adRQTRLEGAEINKSLLALKECIRALGR 364  human
AAR39437   666 nikt---------------nklhGKFSFIDLAGSERGSDTyd----------ndKQTRKEGADINKSLLALKECIRALDQ 720  Dictyostelium di...
BAB02671   377 ksvegnq---------skpprlvGKLSFIDLAGSERGADTtd----------ndKQTRLEGAEINKSLLALKECIRALDN 437  thale cress
AAH67395   397 dsak----------------rtfGRISFIDLAGSERAADArd----------sdRQTKMEGAEINQSLLALKECIRALDQ 450  house mouse
EAK89501   258 srifsttkestlqsplspkfityGKMVFIDLAGSERGADTvh----------stRQTQQDGAGINRSLLALKECIRALHD 327  Cryptosporidium ...
EAA22720   238 dink---------------nislGKIAFIDLAGSERGADTia----------qnKQTQTDGANINRSLLALKECIRAMDS 292  Plasmodium yoeli...
Q39493     303 dygg----------------nlrGKLGLVDLAGSERGSDTkq----------hnSQRRTESADINTSLLALKECIRALGQ 356  Cylindrotheca fu...
NP_586353  372 ehragn-----------egfqasGSIVFVDLAGSERGSDRke----------mgSDVKNEGAEINKSLLALKECIRGMEK 430  Encephalitozoon ...
AAS46035   246 naet---------------gkqfARLTLCDLAGSERNNDSne----------hdAERLKETAQINSSLMALKEVIRCVAL 300  Naegleria gruberi
EAK87200   210 pnkdk--------------natpGVLQLVDLAGSERAADHsasgaracggdvdsAQRMAETVAINTSLMTLKSCIRARTS 275  Ustilago maydis 521
Feature 1                                                                           
2GRY_A     365 nk-----------pHTPFRASKLTQVLRDSFIGe----nSRTCMIATISPGmaSCENTLNTLRYANRVK 418  human
AAR39437   721 ss-----------kHTPFRQSTLTQVLKDSFVGn-----SRTVMIANISPNqsSSEHTLNTLRYADRVK 773  Dictyostelium discoideum
BAB02671   438 dq-----------gHIPFRGSKLTEVLRDSFMGn-----SRTVMISCISPSsgSCEHTLNTLRYADRVK 490  thale cress
AAH67395   451 eh-----------tHTPFRQSKLTQVLKDSFIGn-----AKTCMIANISPShiATEHTLNTLRYADRVK 503  house mouse
EAK89501   328 qq----------ssHVPFRQSELTKVLKDVFVGn-----AHSVMIANIGPCysCSEQTLNTLRYAHRVK 381  Cryptosporidium parvum Iowa II
EAA22720   293 dk-----------nHIPFRDSELTKVLRDIFVGk-----SKSIMIANISPTisSCEQTLNTLRYSSRVK 345  Plasmodium yoelii yoelii
Q39493     357 ks-----------aHVPYRGSKLTLILKDCFSPd-----SKTTMVATVSPGasAADHSLNTLRYADRIK 409  Cylindrotheca fusiformis
NP_586353  431 dk-----------rHLPFRQSKLTQILKNSFIGt-----SKTCLIATISPTpeNVEHTLNTLRYAARIK 483  Encephalitozoon cuniculi GB-M1
AAS46035   301 nkeg-------dkvHVPYRGSKLTRLLKDCFDLeekkkrPHTVVIATVSPLscDSEHTMGTLKHTCIMM 362  Naegleria gruberi
EAK87200   276 ptppaigsgaapvpHIPFRSSKLTLALKEAFDLysr-qpTHTLLIATASPDvvDVAATLNTLRYASALV 343  Ustilago maydis 521

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