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Source database (GenBank or RefSeq) File type

Sorghum_bicolor_NCBIv3

Organism name:

Sorghum bicolor (sorghum)

Infraspecific name:

Cultivar: BTx623

BioSample:

SAMN02953738

BioProject:

PRJNA13876

Submitter:

Sorghum Consortium

Date:

2017/04/07

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_000003195.3 (latest)

RefSeq assembly accession:

GCF_000003195.3 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosomes MT and Pltd

Data displayed for RefSeq version

WGS Project:

ABXC03

Assembly method:

ARACHNE_modified v. 200721016

Genome coverage:

Sequencing technology:

Sanger; Illumina

IDs: 1063861 [UID] 4345258 [GenBank] 4534198 [RefSeq]

See Genome Information for Sorghum bicolor

Pathogen Detection Resources

There are 23 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000003195.3	≠	GCF_000003195.3	Sorghum_bicolor_NCBIv3	Chromosome	Latest GenBank, Latest RefSeq
GCA_000003195.2	n/a	n/a	Sorghum_bicolor_v2	Chromosome	Replaced GenBank
GCA_000003195.1	≠	GCF_000003195.2	Sorbi1	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000003195.1	=	GCF_000003195.1	Sorbi1	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	709,344,700
Total ungapped length	675,973,270
Gaps between scaffolds	0
Number of scaffolds	869
Scaffold N50	68,658,214
Scaffold L50	5
Number of contigs	4,775
Contig N50	1,310,030
Contig L50	78
Total number of chromosomes and plasmids	12
Number of component sequences (WGS or clone)	4,775

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM000760.3	=	NC_012870.2	0
Chromosome 2	CM000761.3	=	NC_012871.2	0
Chromosome 3	CM000762.3	=	NC_012872.2	0
Chromosome 4	CM000763.3	=	NC_012873.2	0
Chromosome 5	CM000764.3	=	NC_012874.2	0
Chromosome 6	CM000765.3	=	NC_012875.2	0
Chromosome 7	CM000766.3	=	NC_012876.2	0
Chromosome 8	CM000767.3	=	NC_012877.2	0
Chromosome 9	CM000768.3	=	NC_012878.2	0
Chromosome 10	CM000769.3	=	NC_012879.2	0
unplaced	n/a	n/a	n/a	857

Molecule name	GenBank ID		RefSeq ID
Mitochondrion MT	DQ984518.1	=	NC_008360.1
Chloroplast Pltd	EF115542.1	=	NC_008602.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	708,735,318	867	675,363,888	68,658,214	3,906
Chromosome 1	80,884,392	1	75,935,427	80,884,392	148
Chromosome 2	77,742,459	1	77,039,817	77,742,459	326
Chromosome 3	74,386,277	1	73,516,268	74,386,277	252
Chromosome 4	68,658,214	1	64,197,241	68,658,214	152
Chromosome 5	71,854,669	1	69,124,584	71,854,669	376
Chromosome 6	61,277,060	1	60,489,507	61,277,060	413
Chromosome 7	65,505,356	1	61,711,077	65,505,356	188
Chromosome 8	62,686,529	1	59,583,418	62,686,529	333
Chromosome 9	59,416,394	1	55,848,692	59,416,394	243
Chromosome 10	61,233,695	1	57,760,086	61,233,695	248
unplaced	25,090,273	857	20,157,771	236,493	1,227

Molecule	Total Length
All	609,382
Mitochondrion MT	468,628
Chloroplast Pltd	140,754

Assembly

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Sorghum_bicolor_NCBIv3

See Genome Information for Sorghum bicolor

Pathogen Detection Resources

There are 23 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear