4D0T: GalNAc-T2 crystal soaked with UDP-GalNAc, EA2 peptide and manganese

PDB ID: 4D0TDownload
MMDB ID: 120262
PDB Deposition Date: 2014/4/30
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 2.45  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 4D0T: trimeric; determined by author and by software (PISA)
Molecular Components in 4D0T
Label Count Molecule
Proteins (3 molecules)
2
Polypeptide N-acetylgalactosaminyltransferase 2
Molecule annotation
1
Peptide
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
2
MANGANESE (II) IONMANGANESE (II) ION
2
1
URIDINE-5'-DIPHOSPHATEURIDINE-5'-DIPHOSPHATE
3
2
1,2-ETHANEDIOL1,2-ETHANEDIOL
4
1
URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINEURIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE
5
1
2-acetamido-2-deoxy-beta-D-galactopyranose2-acetamido-2-deoxy-beta-D-galactopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303