3DNG: Crystal structure of the complex between MMP-8 and a non-zinc chelating inhibitor

PDB ID: 3DNGDownload
MMDB ID: 69956
PDB Deposition Date: 2008/7/2
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2  Å
Source Organism:
Similar Structures:
Biological Unit for 3DNG: monomeric; determined by author and by software (PISA)
Molecular Components in 3DNG
Label Count Molecule
Protein (1 molecule)
1
Neutrophil Collagenase
(Gene symbol: MMP8)
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
2
CALCIUM IONCALCIUM ION
2
2
ZINC IONZINC ION
3
1
(5S)-5-(2-amino-2-oxoethyl)-4-oxo-N-[(3-oxo-3,4-dihydro-2H-1,4-benzoxazin-6-yl)methyl]-3,4,5,6,7,8-hexahydro[1]benzothieno[2,3-d]pyrimidine-2-carboxamide(5S)-5-(2-amino-2-oxoethyl)-4-oxo-N-[(3-oxo-3,4-dihydro-2H-1,4-benzoxazin-6-yl)methyl]-3,4,5,6,7,8-hexahydro[1]benzothieno[2,3-d]pyrimidine-2-carboxamide
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303