NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1034634047|ref|XP_016862157|]
View 

SID1 transmembrane family member 1 isoform X17 [Homo sapiens]

Protein Classification

SID1 transmembrane family member( domain architecture ID 10623302)

SID1 transmembrane family member similar to Caenorhabditis elegans systemic RNA interference defective protein 1 (SID1) that plays a role in RNA-mediated gene silencing by acting cell-autonomously as a channel for the transport of double-stranded RNA (dsRNA) between cells

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SID-1_RNA_chan pfam13965
dsRNA-gated channel SID-1; This is a family of proteins that are transmembrane dsRNA-gated ...
 12-384 0e+00

dsRNA-gated channel SID-1; This is a family of proteins that are transmembrane dsRNA-gated channels. They passively transport dsRNA into cells and do not act as ATP-dependent pumps. They are required for systemic RNA interference. This family of proteins belong to the CREST superfamily, which are distantly related to GPCRs.


:

Pssm-ID: 464057  Cd Length: 599  Bit Score: 653.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034634047  12 KNHIISFWNIITIAVFYALPVIQLVITYQTVVNVTGNQDICYYNFLCAHPLGVLSAFNNILSNLGHVLLGFLFLLIVLRR 91
Cdd:pfam13965 215 KKYLIYLWNILTIAVFYALPVLQLVITYQNVVNVTGNQDMCYYNFLCAHPLGELSAFNNIISNIGYVLLGLLFLLIVLRR 294

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034634047  92 DILHRRaleaKDIFAVEYGIPKHFGLFYAMGIALMMEGVLSACYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDIN 171
Cdd:pfam13965 295 EILHRR----NPIPATEYGIPKHFGLFYAMGLALIMEGILSACYHVCPNYSNFQFDTSFMYVIAGLCMLKLYQTRHPDIN 370

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034634047 172 ASAYSAYASFAVVIMVTVLGVVFGKNDVWFWVIFSAIHVLASLALSTQIYYMGRFKIDvsdtdLGIFRRAAMVFYTDCIQ 251
Cdd:pfam13965 371 ASAYTAFALLAVVIFLALIGVVFGKSNVRFWIAFSIIHVLASLCLSTQIYYMGRWKLD-----SGIFRRHLMILYTDCKK 445

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034634047 252 QCSRPLYMDRMVLLVVGNLVNWSFALFGLIYRPRDFASYMLGIFICNLLLYLAFYIIMKLRSSEKVLPVPLFCIVATAVM 331
Cdd:pfam13965 446 QCSRPMYKDRMVLLVVGNLVNWSLAVFGLIYHPNDFASYLLGIFIGNLILYLAFYIIMKLRSRERILPLALFCILLAAVV 525

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1034634047 332 WAAALYFFFQNLSSWEGTPAESREKNRECILLDFFDDHDIWHFLSATALFFSF 384
Cdd:pfam13965 526 WAAALYFFFQDLSSWTLTPAESRELNKPCILLGFFDSHDLWHFLSAIALFFSF 578
 
Name Accession Description Interval E-value
SID-1_RNA_chan pfam13965
dsRNA-gated channel SID-1; This is a family of proteins that are transmembrane dsRNA-gated ...
 12-384 0e+00

dsRNA-gated channel SID-1; This is a family of proteins that are transmembrane dsRNA-gated channels. They passively transport dsRNA into cells and do not act as ATP-dependent pumps. They are required for systemic RNA interference. This family of proteins belong to the CREST superfamily, which are distantly related to GPCRs.


Pssm-ID: 464057  Cd Length: 599  Bit Score: 653.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034634047  12 KNHIISFWNIITIAVFYALPVIQLVITYQTVVNVTGNQDICYYNFLCAHPLGVLSAFNNILSNLGHVLLGFLFLLIVLRR 91
Cdd:pfam13965 215 KKYLIYLWNILTIAVFYALPVLQLVITYQNVVNVTGNQDMCYYNFLCAHPLGELSAFNNIISNIGYVLLGLLFLLIVLRR 294

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034634047  92 DILHRRaleaKDIFAVEYGIPKHFGLFYAMGIALMMEGVLSACYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDIN 171
Cdd:pfam13965 295 EILHRR----NPIPATEYGIPKHFGLFYAMGLALIMEGILSACYHVCPNYSNFQFDTSFMYVIAGLCMLKLYQTRHPDIN 370

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034634047 172 ASAYSAYASFAVVIMVTVLGVVFGKNDVWFWVIFSAIHVLASLALSTQIYYMGRFKIDvsdtdLGIFRRAAMVFYTDCIQ 251
Cdd:pfam13965 371 ASAYTAFALLAVVIFLALIGVVFGKSNVRFWIAFSIIHVLASLCLSTQIYYMGRWKLD-----SGIFRRHLMILYTDCKK 445

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034634047 252 QCSRPLYMDRMVLLVVGNLVNWSFALFGLIYRPRDFASYMLGIFICNLLLYLAFYIIMKLRSSEKVLPVPLFCIVATAVM 331
Cdd:pfam13965 446 QCSRPMYKDRMVLLVVGNLVNWSLAVFGLIYHPNDFASYLLGIFIGNLILYLAFYIIMKLRSRERILPLALFCILLAAVV 525

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1034634047 332 WAAALYFFFQNLSSWEGTPAESREKNRECILLDFFDDHDIWHFLSATALFFSF 384
Cdd:pfam13965 526 WAAALYFFFQDLSSWTLTPAESRELNKPCILLGFFDSHDLWHFLSAIALFFSF 578
 
Name Accession Description Interval E-value
SID-1_RNA_chan pfam13965
dsRNA-gated channel SID-1; This is a family of proteins that are transmembrane dsRNA-gated ...
 12-384 0e+00

dsRNA-gated channel SID-1; This is a family of proteins that are transmembrane dsRNA-gated channels. They passively transport dsRNA into cells and do not act as ATP-dependent pumps. They are required for systemic RNA interference. This family of proteins belong to the CREST superfamily, which are distantly related to GPCRs.


Pssm-ID: 464057  Cd Length: 599  Bit Score: 653.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034634047  12 KNHIISFWNIITIAVFYALPVIQLVITYQTVVNVTGNQDICYYNFLCAHPLGVLSAFNNILSNLGHVLLGFLFLLIVLRR 91
Cdd:pfam13965 215 KKYLIYLWNILTIAVFYALPVLQLVITYQNVVNVTGNQDMCYYNFLCAHPLGELSAFNNIISNIGYVLLGLLFLLIVLRR 294

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034634047  92 DILHRRaleaKDIFAVEYGIPKHFGLFYAMGIALMMEGVLSACYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDIN 171
Cdd:pfam13965 295 EILHRR----NPIPATEYGIPKHFGLFYAMGLALIMEGILSACYHVCPNYSNFQFDTSFMYVIAGLCMLKLYQTRHPDIN 370

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034634047 172 ASAYSAYASFAVVIMVTVLGVVFGKNDVWFWVIFSAIHVLASLALSTQIYYMGRFKIDvsdtdLGIFRRAAMVFYTDCIQ 251
Cdd:pfam13965 371 ASAYTAFALLAVVIFLALIGVVFGKSNVRFWIAFSIIHVLASLCLSTQIYYMGRWKLD-----SGIFRRHLMILYTDCKK 445

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034634047 252 QCSRPLYMDRMVLLVVGNLVNWSFALFGLIYRPRDFASYMLGIFICNLLLYLAFYIIMKLRSSEKVLPVPLFCIVATAVM 331
Cdd:pfam13965 446 QCSRPMYKDRMVLLVVGNLVNWSLAVFGLIYHPNDFASYLLGIFIGNLILYLAFYIIMKLRSRERILPLALFCILLAAVV 525

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1034634047 332 WAAALYFFFQNLSSWEGTPAESREKNRECILLDFFDDHDIWHFLSATALFFSF 384
Cdd:pfam13965 526 WAAALYFFFQDLSSWTLTPAESRELNKPCILLGFFDSHDLWHFLSAIALFFSF 578
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH