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Conserved domains on  [gi|1034560389|ref|XP_016857351|]
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protein-associating with the carboxyl-terminal domain of ezrin isoform X2 [Homo sapiens]

Protein Classification

SCY1-like family protein( domain architecture ID 10195806)

SCY1-like family protein belonging to the protein kinase superfamily is a catalytically inactive protein with similarity to yeast Scy1, and may be involved in membrane trafficking

CATH:  1.10.510.10
Gene Ontology:  GO:0006468|GO:0005524
SCOP:  4003661

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PK_SCY1_like cd14011
Pseudokinase domain of Scy1-like proteins; The pseudokinase domain shows similarity to protein ...
9-247 2.02e-64

Pseudokinase domain of Scy1-like proteins; The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. This subfamily is composed of the catalytically inactive kinases with similarity to yeast Scy1. It includes four mammalian proteins called SCY1-like protein 1 (SCYL1), SCYL2, SCYL3, as well as Testis-EXpressed protein 14 (TEX14). SCYL1 binds to and co-localizes with the membrane trafficking coatomer I (COPI) complex, and regulates COPI-mediated vesicle trafficking. Null mutations in the SCYL1 gene are responsible for the pathology in mdf (muscle-deficient) mice which display progressive motor neuropathy. SCYL2, also called coated vesicle-associated kinase of 104 kDa (CVAK104), is involved in the trafficking of clathrin-coated vesicles. It also binds the HIV-1 accessory protein Vpu and acts as a regulatory factor that promotes the dephosphorylation of Vpu, facilitating the restriction of HIV-1 release. SCYL3, also called ezrin-binding protein PACE-1, may be involved in regulating cell adhesion and migration. TEX14 is required for spermatogenesis and male fertility. It localizes to kinetochores (KT) during mitosis and is a target of the mitotic kinase PLK1. It regulates the maturation of the outer KT and the KT-microtubule attachment. The SCY1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


:

Pssm-ID: 270913 [Multi-domain]  Cd Length: 287  Bit Score: 214.88  E-value: 2.02e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389   9 KSYTLREPPFTLPSGLAVYpavlqDGKFASVFVYKRENEDK------------VNKAAKHLKTLRHPCLLRFLSCTVEA- 75
Cdd:cd14011     1 VASAGPGLPWKIYNGSKKS-----TKQEVSVFVFEKKQLEEyskrdreqilelLKRGVKQLTRLRHPRILTVQHPLEESr 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389  76 DGIHLVTERVQ-PLEVALET---------------LSSAEVCAGIYDILLALIFLHDRGHLTHNNVCLSSVFVSEDGHWK 139
Cdd:cd14011    76 ESLAFATEPVFaSLANVLGErdnmpspppelqdykLYDVEIKYGLLQISEALSFLHNDVKLVHGNICPESVVINSNGEWK 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389 140 LGGMETVCKVSQATPEFLR---SIQSIRDPASIPPEEMSPEFTTLPEChGHARDAFSFGTLVESLLT---ILNE----QV 209
Cdd:cd14011   156 LAGFDFCISSEQATDQFPYfreYDPNLPPLAQPNLNYLAPEYILSKTC-DPASDMFSLGVLIYAIYNkgkPLFDcvnnLL 234
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1034560389 210 SADVLS---------------SFQQTLHSTLLNPIPKCRPALCTLLSHDFFRN 247
Cdd:cd14011   235 SYKKNSnqlrqlslsllekvpEELRDHVKTLLNVTPEVRPDAEQLSKIPFFDD 287
 
Name Accession Description Interval E-value
PK_SCY1_like cd14011
Pseudokinase domain of Scy1-like proteins; The pseudokinase domain shows similarity to protein ...
9-247 2.02e-64

Pseudokinase domain of Scy1-like proteins; The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. This subfamily is composed of the catalytically inactive kinases with similarity to yeast Scy1. It includes four mammalian proteins called SCY1-like protein 1 (SCYL1), SCYL2, SCYL3, as well as Testis-EXpressed protein 14 (TEX14). SCYL1 binds to and co-localizes with the membrane trafficking coatomer I (COPI) complex, and regulates COPI-mediated vesicle trafficking. Null mutations in the SCYL1 gene are responsible for the pathology in mdf (muscle-deficient) mice which display progressive motor neuropathy. SCYL2, also called coated vesicle-associated kinase of 104 kDa (CVAK104), is involved in the trafficking of clathrin-coated vesicles. It also binds the HIV-1 accessory protein Vpu and acts as a regulatory factor that promotes the dephosphorylation of Vpu, facilitating the restriction of HIV-1 release. SCYL3, also called ezrin-binding protein PACE-1, may be involved in regulating cell adhesion and migration. TEX14 is required for spermatogenesis and male fertility. It localizes to kinetochores (KT) during mitosis and is a target of the mitotic kinase PLK1. It regulates the maturation of the outer KT and the KT-microtubule attachment. The SCY1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270913 [Multi-domain]  Cd Length: 287  Bit Score: 214.88  E-value: 2.02e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389   9 KSYTLREPPFTLPSGLAVYpavlqDGKFASVFVYKRENEDK------------VNKAAKHLKTLRHPCLLRFLSCTVEA- 75
Cdd:cd14011     1 VASAGPGLPWKIYNGSKKS-----TKQEVSVFVFEKKQLEEyskrdreqilelLKRGVKQLTRLRHPRILTVQHPLEESr 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389  76 DGIHLVTERVQ-PLEVALET---------------LSSAEVCAGIYDILLALIFLHDRGHLTHNNVCLSSVFVSEDGHWK 139
Cdd:cd14011    76 ESLAFATEPVFaSLANVLGErdnmpspppelqdykLYDVEIKYGLLQISEALSFLHNDVKLVHGNICPESVVINSNGEWK 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389 140 LGGMETVCKVSQATPEFLR---SIQSIRDPASIPPEEMSPEFTTLPEChGHARDAFSFGTLVESLLT---ILNE----QV 209
Cdd:cd14011   156 LAGFDFCISSEQATDQFPYfreYDPNLPPLAQPNLNYLAPEYILSKTC-DPASDMFSLGVLIYAIYNkgkPLFDcvnnLL 234
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1034560389 210 SADVLS---------------SFQQTLHSTLLNPIPKCRPALCTLLSHDFFRN 247
Cdd:cd14011   235 SYKKNSnqlrqlslsllekvpEELRDHVKTLLNVTPEVRPDAEQLSKIPFFDD 287
SPS1 COG0515
Serine/threonine protein kinase [Signal transduction mechanisms];
28-140 1.45e-06

Serine/threonine protein kinase [Signal transduction mechanisms];


Pssm-ID: 440281 [Multi-domain]  Cd Length: 482  Bit Score: 51.17  E-value: 1.45e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389  28 PAVLQDGKFASVFvyKREnedkvnkaAKHLKTLRHPCLLRFLSCTVEADGIHLVTERV--QPLEVALET---LSSAEVCA 102
Cdd:COG0515    42 PELAADPEARERF--RRE--------ARALARLNHPNIVRVYDVGEEDGRPYLVMEYVegESLADLLRRrgpLPPAEALR 111
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1034560389 103 GIYDILLALIFLHDRGhLTHNNVCLSSVFVSEDGHWKL 140
Cdd:COG0515   112 ILAQLAEALAAAHAAG-IVHRDIKPANILLTPDGRVKL 148
S_TKc smart00220
Serine/Threonine protein kinases, catalytic domain; Phosphotransferases. Serine or ...
43-141 3.49e-04

Serine/Threonine protein kinases, catalytic domain; Phosphotransferases. Serine or threonine-specific kinase subfamily.


Pssm-ID: 214567 [Multi-domain]  Cd Length: 254  Bit Score: 42.90  E-value: 3.49e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389   43 KRENEDKVNKAAKH----LKTLRHPCLLRFLSCTVEADGIHLVTERVQPLE-----VALETLSSAEVCAGIYDILLALIF 113
Cdd:smart00220  33 KKKKIKKDRERILReikiLKKLKHPNIVRLYDVFEDEDKLYLVMEYCEGGDlfdllKKRGRLSEDEARFYLRQILSALEY 112
                           90       100
                   ....*....|....*....|....*...
gi 1034560389  114 LHDRGHLtHNNVCLSSVFVSEDGHWKLG 141
Cdd:smart00220 113 LHSKGIV-HRDLKPENILLDEDGHVKLA 139
PK_Tyr_Ser-Thr pfam07714
Protein tyrosine and serine/threonine kinase; Protein phosphorylation, which plays a key role ...
52-198 4.92e-03

Protein tyrosine and serine/threonine kinase; Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyze the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyze the reverse process. Protein kinases fall into three broad classes, characterized with respect to substrate specificity; Serine/threonine-protein kinases, tyrosine-protein kinases, and dual specificity protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins). This entry represents the catalytic domain found in a number of serine/threonine- and tyrosine-protein kinases. It does not include the catalytic domain of dual specificity kinases.


Pssm-ID: 462242 [Multi-domain]  Cd Length: 258  Bit Score: 39.40  E-value: 4.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389  52 KAAKHLKTLRHPCLLRFLSCTVEADGIHLVTE-----------RVQPLEVALETLssAEVCagiYDILLALIFLHDRgHL 120
Cdd:pfam07714  50 EEASIMKKLDHPNIVKLLGVCTQGEPLYIVTEympggdlldflRKHKRKLTLKDL--LSMA---LQIAKGMEYLESK-NF 123
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389 121 THNNVCLSSVFVSEDGHWKLG--GMetvckvSQATPEFLRSIQsiRDPASIPPEEMSPE------FTtlpechgHARDAF 192
Cdd:pfam07714 124 VHRDLAARNCLVSENLVVKISdfGL------SRDIYDDDYYRK--RGGGKLPIKWMAPEslkdgkFT-------SKSDVW 188

                  ....*.
gi 1034560389 193 SFGTLV 198
Cdd:pfam07714 189 SFGVLL 194
 
Name Accession Description Interval E-value
PK_SCY1_like cd14011
Pseudokinase domain of Scy1-like proteins; The pseudokinase domain shows similarity to protein ...
9-247 2.02e-64

Pseudokinase domain of Scy1-like proteins; The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. This subfamily is composed of the catalytically inactive kinases with similarity to yeast Scy1. It includes four mammalian proteins called SCY1-like protein 1 (SCYL1), SCYL2, SCYL3, as well as Testis-EXpressed protein 14 (TEX14). SCYL1 binds to and co-localizes with the membrane trafficking coatomer I (COPI) complex, and regulates COPI-mediated vesicle trafficking. Null mutations in the SCYL1 gene are responsible for the pathology in mdf (muscle-deficient) mice which display progressive motor neuropathy. SCYL2, also called coated vesicle-associated kinase of 104 kDa (CVAK104), is involved in the trafficking of clathrin-coated vesicles. It also binds the HIV-1 accessory protein Vpu and acts as a regulatory factor that promotes the dephosphorylation of Vpu, facilitating the restriction of HIV-1 release. SCYL3, also called ezrin-binding protein PACE-1, may be involved in regulating cell adhesion and migration. TEX14 is required for spermatogenesis and male fertility. It localizes to kinetochores (KT) during mitosis and is a target of the mitotic kinase PLK1. It regulates the maturation of the outer KT and the KT-microtubule attachment. The SCY1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270913 [Multi-domain]  Cd Length: 287  Bit Score: 214.88  E-value: 2.02e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389   9 KSYTLREPPFTLPSGLAVYpavlqDGKFASVFVYKRENEDK------------VNKAAKHLKTLRHPCLLRFLSCTVEA- 75
Cdd:cd14011     1 VASAGPGLPWKIYNGSKKS-----TKQEVSVFVFEKKQLEEyskrdreqilelLKRGVKQLTRLRHPRILTVQHPLEESr 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389  76 DGIHLVTERVQ-PLEVALET---------------LSSAEVCAGIYDILLALIFLHDRGHLTHNNVCLSSVFVSEDGHWK 139
Cdd:cd14011    76 ESLAFATEPVFaSLANVLGErdnmpspppelqdykLYDVEIKYGLLQISEALSFLHNDVKLVHGNICPESVVINSNGEWK 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389 140 LGGMETVCKVSQATPEFLR---SIQSIRDPASIPPEEMSPEFTTLPEChGHARDAFSFGTLVESLLT---ILNE----QV 209
Cdd:cd14011   156 LAGFDFCISSEQATDQFPYfreYDPNLPPLAQPNLNYLAPEYILSKTC-DPASDMFSLGVLIYAIYNkgkPLFDcvnnLL 234
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1034560389 210 SADVLS---------------SFQQTLHSTLLNPIPKCRPALCTLLSHDFFRN 247
Cdd:cd14011   235 SYKKNSnqlrqlslsllekvpEELRDHVKTLLNVTPEVRPDAEQLSKIPFFDD 287
PKc_Myt1 cd14050
Catalytic domain of the Dual-specificity protein kinase, Myt1; Dual-specificity PKs catalyze ...
31-242 9.75e-14

Catalytic domain of the Dual-specificity protein kinase, Myt1; Dual-specificity PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine as well as tyrosine residues on protein substrates. Myt1 is a cytoplasmic cell cycle checkpoint kinase that can keep the cyclin-dependent kinase CDK1 in an inactive state through phosphorylation of N-terminal thr (T14) and tyr (Y15) residues, leading to the delay of meiosis I entry. Meiotic progression is ensured by a two-step inhibition and downregulation of Myt1 by CDK1/XRINGO and p90Rsk during oocyte maturation. In addition, Myt1 targets cyclin B1/B2 and is essential for Golgi and ER assembly during telophase. In Drosophila, Myt1 may be a downstream target of Notch during eye development. The Myt1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine PKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270952 [Multi-domain]  Cd Length: 249  Bit Score: 71.57  E-value: 9.75e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389  31 LQDGKFASV------FVYKRENEDKVNKAAKHLKTLRHPCLLRFLSCTVEADGIHLVTERVQP-LEVALE---TLSSAEV 100
Cdd:cd14050    23 REDGKLYAVkrsrsrFRGEKDRKRKLEEVERHEKLGEHPNCVRFIKAWEEKGILYIQTELCDTsLQQYCEethSLPESEV 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389 101 CAGIYDILLALIFLHDRGhLTHNNVCLSSVFVSEDGHWKLGGMETVCKVSQATpeflRSIQSIRDPASIPPEEMSPEFTT 180
Cdd:cd14050   103 WNILLDLLKGLKHLHDHG-LIHLDIKPANIFLSKDGVCKLGDFGLVVELDKED----IHDAQEGDPRYMAPELLQGSFTK 177
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034560389 181 lpechghARDAFSFG-TLVESLLTI----------------LNEQVSADVLSSFQQTLHStLLNPIPKCRPALCTLLSH 242
Cdd:cd14050   178 -------AADIFSLGiTILELACNLelpsggdgwhqlrqgyLPEEFTAGLSPELRSIIKL-MMDPDPERRPTAEDLLAL 248
PKc cd00180
Catalytic domain of Protein Kinases; PKs catalyze the transfer of the gamma-phosphoryl group ...
34-242 3.74e-12

Catalytic domain of Protein Kinases; PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. PKs make up a large family of serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and more than 500 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase.


Pssm-ID: 270622 [Multi-domain]  Cd Length: 215  Bit Score: 66.14  E-value: 3.74e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389  34 GKFASVFVYKRENEDK------VNKA------------AKHLKTLRHPCLLRFLSCTVEADGIHLVTERVQP------LE 89
Cdd:cd00180     4 GSFGKVYKARDKETGKkvavkvIPKEklkklleellreIEILKKLNHPNIVKLYDVFETENFLYLVMEYCEGgslkdlLK 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389  90 VALETLSSAEVCAGIYDILLALIFLHDRGhLTHNNVCLSSVFVSEDGHWKLG--GMetvCKVSQATPEFLRSIQSIRDPA 167
Cdd:cd00180    84 ENKGPLSEEEALSILRQLLSALEYLHSNG-IIHRDLKPENILLDSDGTVKLAdfGL---AKDLDSDDSLLKTTGGTTPPY 159
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034560389 168 SIPPEEMSPEFttlpecHGHARDAFSFG-TLVEslltilneqvsadvLSSFQQTLHStLLNPIPKCRPALCTLLSH 242
Cdd:cd00180   160 YAPPELLGGRY------YGPKVDIWSLGvILYE--------------LEELKDLIRR-MLQYDPKKRPSAKELLEH 214
SPS1 COG0515
Serine/threonine protein kinase [Signal transduction mechanisms];
28-140 1.45e-06

Serine/threonine protein kinase [Signal transduction mechanisms];


Pssm-ID: 440281 [Multi-domain]  Cd Length: 482  Bit Score: 51.17  E-value: 1.45e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389  28 PAVLQDGKFASVFvyKREnedkvnkaAKHLKTLRHPCLLRFLSCTVEADGIHLVTERV--QPLEVALET---LSSAEVCA 102
Cdd:COG0515    42 PELAADPEARERF--RRE--------ARALARLNHPNIVRVYDVGEEDGRPYLVMEYVegESLADLLRRrgpLPPAEALR 111
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1034560389 103 GIYDILLALIFLHDRGhLTHNNVCLSSVFVSEDGHWKL 140
Cdd:COG0515   112 ILAQLAEALAAAHAAG-IVHRDIKPANILLTPDGRVKL 148
STKc_TAO3 cd06633
Catalytic domain of the Serine/Threonine Kinase, Thousand-and-One Amino acids 3; STKs catalyze ...
43-248 8.66e-06

Catalytic domain of the Serine/Threonine Kinase, Thousand-and-One Amino acids 3; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. TAO3 is also known as JIK (c-Jun N-terminal kinase inhibitory kinase) or KFC (kinase from chicken). It specifically activates JNK, presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. The TAO3 subfamily is part of a larger superfamily that includes the catalytic domains of other STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270803 [Multi-domain]  Cd Length: 313  Bit Score: 48.11  E-value: 8.66e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389  43 KRENE--DKVNKAAKHLKTLRHPCLLRFLSCTVEADGIHLVTERV-----QPLEVALETLSSAEVCAGIYDILLALIFLH 115
Cdd:cd06633    59 KQTNEkwQDIIKEVKFLQQLKHPNTIEYKGCYLKDHTAWLVMEYClgsasDLLEVHKKPLQEVEIAAITHGALQGLAYLH 138
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389 116 DRgHLTHNNVCLSSVFVSEDGHWKLGGMETVCKVSQATpEFLRSiqsirdpasipPEEMSPE-FTTLPECHGHAR-DAFS 193
Cdd:cd06633   139 SH-NMIHRDIKAGNILLTEPGQVKLADFGSASIASPAN-SFVGT-----------PYWMAPEvILAMDEGQYDGKvDIWS 205
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034560389 194 FGT----LVESLLTILNEQVSADVLSSFQQ---TLHST------------LLNPIPKCRPALCTLLSHDFFRND 248
Cdd:cd06633   206 LGItcieLAERKPPLFNMNAMSALYHIAQNdspTLQSNewtdsfrgfvdyCLQKIPQERPSSAELLRHDFVRRE 279
STKc_Chk2 cd14084
Catalytic domain of the Serine/Threonine kinase, Cell cycle Checkpoint Kinase 2; STKs catalyze ...
45-159 3.42e-05

Catalytic domain of the Serine/Threonine kinase, Cell cycle Checkpoint Kinase 2; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. Checkpoint Kinase 2 (Chk2) plays an important role in cellular responses to DNA double-strand breaks and related lesions. It is phosphorylated and activated by ATM kinase, resulting in its dissociation from sites of damage to phosphorylate downstream targets such as BRCA1, p53, cell cycle transcription factor E2F1, the promyelocytic leukemia protein (PML) involved in apoptosis, and CDC25 phosphatases, among others. Mutations in Chk2 is linked to a variety of cancers including familial breast cancer, myelodysplastic syndromes, prostate cancer, lung cancer, and osteosarcomas. Chk2 contains an N-terminal SQ/TQ cluster domain (SCD), a central forkhead-associated (FHA) domain, and a C-terminal catalytic kinase domain. The Chk2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270986 [Multi-domain]  Cd Length: 275  Bit Score: 46.23  E-value: 3.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389  45 ENEDKVNKAAKHLKTLRHPCLLRFLSCTVEADGIHLVTERVQPLE-----VALETLSSAEVCAGIYDILLALIFLHDRGh 119
Cdd:cd14084    53 NKPRNIETEIEILKKLSHPCIIKIEDFFDAEDDYYIVLELMEGGElfdrvVSNKRLKEAICKLYFYQMLLAVKYLHSNG- 131
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1034560389 120 LTH-----NNVCLSS------VFVSEDGHWKLGG----METVC-KVSQATPEFLRS 159
Cdd:cd14084   132 IIHrdlkpENVLLSSqeeeclIKITDFGLSKILGetslMKTLCgTPTYLAPEVLRS 187
STKc_PLK3 cd14189
Catalytic domain of the Serine/Threonine Kinase, Polo-like kinase 3; STKs catalyze the ...
45-245 4.94e-05

Catalytic domain of the Serine/Threonine Kinase, Polo-like kinase 3; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. PLKs play important roles in cell cycle progression and in DNA damage responses. They regulate mitotic entry, mitotic exit, and cytokinesis. In general PLKs contain an N-terminal catalytic kinase domain and a C-terminal regulatory polo box domain (PBD), which is comprised by two bipartite polo-box motifs (or polo boxes) and is involved in protein interactions. There are five mammalian PLKs (PLK1-5) from distinct genes. PLK3, also called Prk or Fnk (FGF-inducible kinase), regulates angiogenesis and responses to DNA damage. Activated PLK3 mediates Chk2 phosphorylation by ATM and the resulting checkpoint activation. PLK3 phosphorylates DNA polymerase delta and may be involved in DNA repair. It also inhibits Cdc25c, thereby regulating the onset of mitosis. The PLK3 subfamily is part of a larger superfamily that includes the catalytic domains of other STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 271091 [Multi-domain]  Cd Length: 255  Bit Score: 45.69  E-value: 4.94e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389  45 ENEDKVNKAAKHlKTLRHPCLLRFLSCTVEADGIHLVTE-----RVQPLEVALETLSSAEVCAGIYDILLALIFLHDRGH 119
Cdd:cd14189    44 QREKIVNEIELH-RDLHHKHVVKFSHHFEDAENIYIFLElcsrkSLAHIWKARHTLLEPEVRYYLKQIISGLKYLHLKGI 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389 120 LtHNNVCLSSVFVSEDGHWKLGGMETVCKvsQATPEfLRSIQSIRDPASIPPEEMspefttLPECHGHARDAFSFGTLVE 199
Cdd:cd14189   123 L-HRDLKLGNFFINENMELKVGDFGLAAR--LEPPE-QRKKTICGTPNYLAPEVL------LRQGHGPESDVWSLGCVMY 192
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034560389 200 SLLTILNEQVSADV-----------------LSSFQQTLHSTLLNPIPKCRPALCTLLSHDFF 245
Cdd:cd14189   193 TLLCGNPPFETLDLketyrcikqvkytlpasLSLPARHLLAGILKRNPGDRLTLDQILEHEFF 255
PKc_Wee1_like cd13997
Catalytic domain of the Wee1-like Protein Kinases; PKs catalyze the transfer of the ...
62-243 5.50e-05

Catalytic domain of the Wee1-like Protein Kinases; PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. This subfamily is composed of the dual-specificity kinase Myt1, the protein tyrosine kinase Wee1, and similar proteins. These proteins are cell cycle checkpoint kinases that are involved in the regulation of cyclin-dependent kinase CDK1, the master engine for mitosis. CDK1 is kept inactivated through phosphorylation of N-terminal thr (T14 by Myt1) and tyr (Y15 by Myt1 and Wee1) residues. Mitosis progression is ensured through activation of CDK1 by dephoshorylation and inactivation of Myt1/Wee1. The Wee1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine PKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270899 [Multi-domain]  Cd Length: 252  Bit Score: 45.45  E-value: 5.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389  62 HPCLLRFLSCTVEADGIHLVTE--------RVQPLEVALETLSSAEVCAGIYDILLALIFLHDRGhLTHNNVCLSSVFVS 133
Cdd:cd13997    59 HPNIVRYYSSWEEGGHLYIQMElcengslqDALEELSPISKLSEAEVWDLLLQVALGLAFIHSKG-IVHLDIKPDNIFIS 137
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389 134 EDGHWKLG--GMETVCKVSqatPEFLRSiqsirdpasiPPEEMSPEFTTLPECHGHARDAFSFG-TLVESLLTI------ 204
Cdd:cd13997   138 NKGTCKIGdfGLATRLETS---GDVEEG----------DSRYLAPELLNENYTHLPKADIFSLGvTVYEAATGEplprng 204
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1034560389 205 -LNEQVSADVLSSFQQTLHS--------TLLNPIPKCRPALCTLLSHD 243
Cdd:cd13997   205 qQWQQLRQGKLPLPPGLVLSqeltrllkVMLDPDPTRRPTADQLLAHD 252
STKc_PLK2 cd14188
Catalytic domain of the Serine/Threonine Kinase, Polo-like kinase 2; STKs catalyze the ...
41-245 1.49e-04

Catalytic domain of the Serine/Threonine Kinase, Polo-like kinase 2; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. PLKs play important roles in cell cycle progression and in DNA damage responses. They regulate mitotic entry, mitotic exit, and cytokinesis. In general PLKs contain an N-terminal catalytic kinase domain and a C-terminal regulatory polo box domain (PBD), which is comprised by two bipartite polo-box motifs (or polo boxes) and is involved in protein interactions. There are five mammalian PLKs (PLK1-5) from distinct genes. PLK2, also called Snk (serum-inducible kinase), functions in G1 progression, S-phase arrest, and centriole duplication. Its gene is responsive to both growth factors and cellular stress, is a transcriptional target of p53, and activates a G2-M checkpoint. The PLK2 subfamily is part of a larger superfamily that includes the catalytic domains of other STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 271090 [Multi-domain]  Cd Length: 255  Bit Score: 43.85  E-value: 1.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389  41 VYKRENEDKVNKAAKHLKTLRHPCLLRFLSCTVEADGIHLVTERVQPLEVA-----LETLSSAEVCAGIYDILLALIFLH 115
Cdd:cd14188    39 VSKPHQREKIDKEIELHRILHHKHVVQFYHYFEDKENIYILLEYCSRRSMAhilkaRKVLTEPEVRYYLRQIVSGLKYLH 118
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389 116 DRgHLTHNNVCLSSVFVSEDGHWKLGGMETVCKvsqatpefLRSIQSIRDPASIPPEEMSPEFTTlPECHGHARDAFSFG 195
Cdd:cd14188   119 EQ-EILHRDLKLGNFFINENMELKVGDFGLAAR--------LEPLEHRRRTICGTPNYLSPEVLN-KQGHGCESDIWALG 188
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1034560389 196 TLVESLL--------TILNEQVSA---------DVLSSFQQTLHSTLLNPIPKCRPALCTLLSHDFF 245
Cdd:cd14188   189 CVMYTMLlgrppfetTNLKETYRCirearyslpSSLLAPAKHLIASMLSKNPEDRPSLDEIIRHDFF 255
STKc_EIF2AK3_PERK cd14048
Catalytic domain of the Serine/Threonine kinase, eukaryotic translation Initiation Factor ...
48-242 3.43e-04

Catalytic domain of the Serine/Threonine kinase, eukaryotic translation Initiation Factor 2-Alpha Kinase 3 or PKR-like Endoplasmic Reticulum Kinase; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. PERK (or EIF2AK3) is a type-I ER transmembrane protein containing a luminal domain bound with the chaperone BiP under unstressed conditions and a cytoplasmic catalytic kinase domain. In response to the accumulation of misfolded or unfolded proteins in the ER, PERK is activated through the release of BiP, allowing it to dimerize and autophosphorylate. It functions as the central regulator of translational control during the Unfolded Protein Response (UPR) pathway. In addition to the eIF-2 alpha subunit, PERK also phosphorylates Nrf2, a leucine zipper transcription factor which regulates cellular redox status and promotes cell survival during the UPR. EIF2AKs phosphorylate the alpha subunit of eIF-2, resulting in the downregulation of protein synthesis. The PERK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270950 [Multi-domain]  Cd Length: 281  Bit Score: 42.94  E-value: 3.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389  48 DKVNKAAKHLKTLRHPCLLRFLSCTVEA---------DGIHLVTERVQPLEVALE-------TLSSAE--VCAGIY-DIL 108
Cdd:cd14048    49 EKVLREVRALAKLDHPGIVRYFNAWLERppegwqekmDEVYLYIQMQLCRKENLKdwmnrrcTMESRElfVCLNIFkQIA 128
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389 109 LALIFLHDRGhLTHNNVCLSSVFVSEDGHWKLGGMETVCKVSQATPEflrsiQSIRDPasiPPEE------------MSP 176
Cdd:cd14048   129 SAVEYLHSKG-LIHRDLKPSNVFFSLDDVVKVGDFGLVTAMDQGEPE-----QTVLTP---MPAYakhtgqvgtrlyMSP 199
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034560389 177 EfttlpECHG----HARDAFSFGTLVESLLTILNEQVS-ADVLSSFQQ-TLHSTLLNPIPKCRPALCTLLSH 242
Cdd:cd14048   200 E-----QIHGnqysEKVDIFALGLILFELIYSFSTQMErIRTLTDVRKlKFPALFTNKYPEERDMVQQMLSP 266
S_TKc smart00220
Serine/Threonine protein kinases, catalytic domain; Phosphotransferases. Serine or ...
43-141 3.49e-04

Serine/Threonine protein kinases, catalytic domain; Phosphotransferases. Serine or threonine-specific kinase subfamily.


Pssm-ID: 214567 [Multi-domain]  Cd Length: 254  Bit Score: 42.90  E-value: 3.49e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389   43 KRENEDKVNKAAKH----LKTLRHPCLLRFLSCTVEADGIHLVTERVQPLE-----VALETLSSAEVCAGIYDILLALIF 113
Cdd:smart00220  33 KKKKIKKDRERILReikiLKKLKHPNIVRLYDVFEDEDKLYLVMEYCEGGDlfdllKKRGRLSEDEARFYLRQILSALEY 112
                           90       100
                   ....*....|....*....|....*...
gi 1034560389  114 LHDRGHLtHNNVCLSSVFVSEDGHWKLG 141
Cdd:smart00220 113 LHSKGIV-HRDLKPENILLDEDGHVKLA 139
STKc_CAMK cd05117
The catalytic domain of CAMK family Serine/Threonine Kinases; STKs catalyze the transfer of ...
43-118 2.76e-03

The catalytic domain of CAMK family Serine/Threonine Kinases; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. CaMKs are multifunctional calcium and calmodulin (CaM) stimulated STKs involved in cell cycle regulation. There are several types of CaMKs including CaMKI, CaMKII, and CaMKIV. CaMKI proteins are monomeric and they play pivotal roles in the nervous system, including long-term potentiation, dendritic arborization, neurite outgrowth, and the formation of spines, synapses, and axons. CaMKII is a signaling molecule that translates upstream calcium and reactive oxygen species (ROS) signals into downstream responses that play important roles in synaptic function and cardiovascular physiology. CAMKIV is implicated in regulating several transcription factors like CREB, MEF2, and retinoid orphan receptors, as well as in T-cell development and signaling. The CAMK family also consists of other related kinases including the Phosphorylase kinase Gamma subunit (PhKG), the C-terminal kinase domains of Ribosomal S6 kinase (RSK) and Mitogen and stress-activated kinase (MSK), Doublecortin-like kinase (DCKL), and the MAPK-activated protein kinases MK2, MK3, and MK5, among others. The CAMK family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270687 [Multi-domain]  Cd Length: 258  Bit Score: 40.15  E-value: 2.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389  43 KRENEDKVNKAAKHLKTLRHPCLLRFLSCTVEADGIHLVTERVQPLE-----VALETLSSAEVCAGIYDILLALIFLHDR 117
Cdd:cd05117    39 KSEDEEMLRREIEILKRLDHPNIVKLYEVFEDDKNLYLVMELCTGGElfdriVKKGSFSEREAAKIMKQILSAVAYLHSQ 118

                  .
gi 1034560389 118 G 118
Cdd:cd05117   119 G 119
PK_Tyr_Ser-Thr pfam07714
Protein tyrosine and serine/threonine kinase; Protein phosphorylation, which plays a key role ...
52-198 4.92e-03

Protein tyrosine and serine/threonine kinase; Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyze the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyze the reverse process. Protein kinases fall into three broad classes, characterized with respect to substrate specificity; Serine/threonine-protein kinases, tyrosine-protein kinases, and dual specificity protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins). This entry represents the catalytic domain found in a number of serine/threonine- and tyrosine-protein kinases. It does not include the catalytic domain of dual specificity kinases.


Pssm-ID: 462242 [Multi-domain]  Cd Length: 258  Bit Score: 39.40  E-value: 4.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389  52 KAAKHLKTLRHPCLLRFLSCTVEADGIHLVTE-----------RVQPLEVALETLssAEVCagiYDILLALIFLHDRgHL 120
Cdd:pfam07714  50 EEASIMKKLDHPNIVKLLGVCTQGEPLYIVTEympggdlldflRKHKRKLTLKDL--LSMA---LQIAKGMEYLESK-NF 123
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034560389 121 THNNVCLSSVFVSEDGHWKLG--GMetvckvSQATPEFLRSIQsiRDPASIPPEEMSPE------FTtlpechgHARDAF 192
Cdd:pfam07714 124 VHRDLAARNCLVSENLVVKISdfGL------SRDIYDDDYYRK--RGGGKLPIKWMAPEslkdgkFT-------SKSDVW 188

                  ....*.
gi 1034560389 193 SFGTLV 198
Cdd:pfam07714 189 SFGVLL 194
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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