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Conserved domains on  [gi|767962306|ref|XP_011537864|]
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tetraspanin-15 isoform X4 [Homo sapiens]

Protein Classification

tetraspanin( domain architecture ID 10123572)

tetraspanin is a transmembrane protein that acts as a molecular facilitator in diverse processes; similar to Homo sapiens tetraspanin-15 and tetraspanin-33

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
penumbra_like_LEL cd03158
Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. ...
 4-115 5.42e-70

Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.


:

Pssm-ID: 239411  Cd Length: 119  Bit Score: 207.54  E-value: 5.42e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767962306   4 TIDFLNDNIRRGIENYYDDLDFKNIMDFVQKKFKCCGGEDYRDWSKNQYHDCSAPGPLACGVPYTCCIRNT-TEVVNTMC 82
Cdd:cd03158    7 TIDLLEENIRKAIVHYYDDLDLQNIIDFVQKEFKCCGGDDYRDWSKNMYFNCSSPNPEACGVPYSCCIRAKdQEVINTMC 86

                         90       100       110
                 ....*....|....*....|....*....|...
gi 767962306  83 GYKTIDKERFSVQDVIYVRGCTNAVIIWFMDNY 115
Cdd:cd03158   87 GYGVQNLERLEASKLIYTRGCIDAVVLWIEDNL 119
 
Name Accession Description Interval E-value
penumbra_like_LEL cd03158
Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. ...
 4-115 5.42e-70

Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.


Pssm-ID: 239411  Cd Length: 119  Bit Score: 207.54  E-value: 5.42e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767962306   4 TIDFLNDNIRRGIENYYDDLDFKNIMDFVQKKFKCCGGEDYRDWSKNQYHDCSAPGPLACGVPYTCCIRNT-TEVVNTMC 82
Cdd:cd03158    7 TIDLLEENIRKAIVHYYDDLDLQNIIDFVQKEFKCCGGDDYRDWSKNMYFNCSSPNPEACGVPYSCCIRAKdQEVINTMC 86

                         90       100       110
                 ....*....|....*....|....*....|...
gi 767962306  83 GYKTIDKERFSVQDVIYVRGCTNAVIIWFMDNY 115
Cdd:cd03158   87 GYGVQNLERLEASKLIYTRGCIDAVVLWIEDNL 119
Tetraspanin pfam00335
Tetraspanin family;
6-140 1.87e-03

Tetraspanin family;


Pssm-ID: 459767  Cd Length: 183  Bit Score: 37.30  E-value: 1.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767962306    6 DFLNDNIRRGIENYYD-DLDFKNIMDFVQKKFKCCGgedyrdwsknqyhdcsapgplacgvpytccirnttevvntmcgy 84
Cdd:pfam00335 108 NWLKKSLEDGYRDWLDlYSCLNSALDSLQSEFGCCG-------------------------------------------- 143

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 767962306   85 ktidkerfsvqdviyvrGCTNAVIIWFMDNYTIMAGILLGILLPQFLGVLLTLLYI 140
Cdd:pfam00335 144 -----------------GCKEKLLEWLRKNLKIIGAGVIALGVIQLLGIILACCLC 182
 
Name Accession Description Interval E-value
penumbra_like_LEL cd03158
Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. ...
 4-115 5.42e-70

Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.


Pssm-ID: 239411  Cd Length: 119  Bit Score: 207.54  E-value: 5.42e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767962306   4 TIDFLNDNIRRGIENYYDDLDFKNIMDFVQKKFKCCGGEDYRDWSKNQYHDCSAPGPLACGVPYTCCIRNT-TEVVNTMC 82
Cdd:cd03158    7 TIDLLEENIRKAIVHYYDDLDLQNIIDFVQKEFKCCGGDDYRDWSKNMYFNCSSPNPEACGVPYSCCIRAKdQEVINTMC 86

                         90       100       110
                 ....*....|....*....|....*....|...
gi 767962306  83 GYKTIDKERFSVQDVIYVRGCTNAVIIWFMDNY 115
Cdd:cd03158   87 GYGVQNLERLEASKLIYTRGCIDAVVLWIEDNL 119
TM4SF9_like_LEL cd03159
Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. ...
 4-114 7.17e-28

Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 9 (TM4SF9) or Tetraspanin-5 and related proteins. TM4SF9 is strongly expressed witin the central nervous system, and expression levels appear to correlate with differentiation status of particular neurons, hinting at a role in neuronal maturation.


Pssm-ID: 239412 [Multi-domain]  Cd Length: 121  Bit Score: 100.96  E-value: 7.17e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767962306   4 TIDFLNDNIRrgieNYYDDLDFKNIMDFVQKKFKCCGGEDYRDWSKNQYHDCS--APGPLACGVPYTCCIRNTTE-VVNT 80
Cdd:cd03159   11 LTEFLNNNIR----AYRDDIDLQNLIDFLQEYWQCCGARGPDDWNLNIYFNCTdsNPSRERCGVPFSCCVKDPAEdVVNT 86

                         90       100       110
                 ....*....|....*....|....*....|....
gi 767962306  81 MCGYKTIDKERFSVQDVIYVRGCTNAVIIWFMDN 114
Cdd:cd03159   87 QCGYDVRKKPELELQHHIHTKGCVQAFEKWLQDN 120
oculospanin_like_LEL cd03167
Tetraspanin, extracellular domain or large extracellular loop (LEL), oculospanin_like family. ...
 6-114 8.83e-27

Tetraspanin, extracellular domain or large extracellular loop (LEL), oculospanin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contains sequences similar to oculospanin, which is found to be expressed in retinal pigment epithelium, iris, ciliary body, and retinal ganglion cells.


Pssm-ID: 239420  Cd Length: 120  Bit Score: 97.92  E-value: 8.83e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767962306   6 DFLNDNIRRGIENYYDDLDFKNIMDFVQKKFKCCGGEDYRDWSKNQYHDCSAPGPLACGVPYTCCI--RNTTEVVNTMCG 83
Cdd:cd03167    9 DGLEHTLRLAIAHYQDDPDLRFLIDQVQLGLQCCGASSYQDWQQNLYFNCSSPGVQACSLPASCCIdpREDGAVVNDQCG 88

                         90       100       110
                 ....*....|....*....|....*....|.
gi 767962306  84 YKTIDKERFSVQDVIYVRGCTNAVIIWFMDN 114
Cdd:cd03167   89 FGALGLDEDAAQRVVHLGGCGPPLRRWLRGN 119
CD63_LEL cd03166
Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins ...
 8-114 1.44e-11

Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.


Pssm-ID: 239419  Cd Length: 99  Bit Score: 57.87  E-value: 1.44e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767962306   8 LNDNIRRGIENYYDDLDFKNIMDFVQKKFKCCGGEDYRDWSknqyhdcSAPGPLACGVPYTCCIRNTTEvvntmCGyktI 87
Cdd:cd03166   11 FNDSFNQMISNYNKTNDFRKILDRMQKDLKCCGANNYTDWE-------NIPSLDTDSVPDSCCINVTKG-----CG---I 75

                         90       100
                 ....*....|....*....|....*..
gi 767962306  88 DKErfsvQDVIYVRGCTNAVIIWFMDN 114
Cdd:cd03166   76 NFD----EKVIHLEGCVTKIEGWLKKN 98
tetraspanin_LEL cd03127
Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are ...
 6-115 2.43e-11

Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. The tetraspanin family contains CD9, CD63, CD37, CD53, CD82, CD151, and CD81, amongst others. Tetraspanins are involved in diverse processes such as cell activation and proliferation, adhesion and motility, differentiation, cancer, and others. Their various functions may relate to their ability to act as molecular facilitators, grouping specific cell-surface proteins and affecting formation and stability of signaling complexes. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web", which may also include integrins.


Pssm-ID: 239401 [Multi-domain]  Cd Length: 90  Bit Score: 57.13  E-value: 2.43e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767962306   6 DFLNDNIRRGIENYYDDLDFKNIMDFVQKKFKCCGGEDYRDWSKNqyhdcsapgplACGVPYTCCIRNTTEVVNTmcgyk 85
Cdd:cd03127    9 SLVSDTLNDAWDEYYVDDDFQEAMDALQSTFECCGVNGPTDYLDL-----------RLLVPSSCCKGTDGNCGLN----- 72

                         90       100       110
                 ....*....|....*....|....*....|
gi 767962306  86 tidkerfsvqdvIYVRGCTNAVIIWFMDNY 115
Cdd:cd03127   73 ------------LYTEGCLEKLVDFLRSNL 90
CD151_like_LEL cd03155
Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family. ...
 8-75 5.27e-09

Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD151strongly associates with integrins, especially alpha3beta1, alpha6beta1, alpha7beta1, and alpha6beta4; it may play roles in cell-cell adhesion, cell migration, platelet aggregation, and angiogenesis. For example, CD151 is is involved in regulation of migration of neutrophils, endothelial cells, and various tumor cell lines; it associates specifically with laminin-binding integrins and strengthens alpha6beta1 integrin-mediated adhesion to laminin-1; CD151 also specifically attenuates adhesion-dependent activation of Ras and correspdonding downstream effects, and is involved in epithelial cell-cell adhesion as a modulator of PKC- and Cdc42-dependent actin cytoskeletal reorganization.


Pssm-ID: 239408 [Multi-domain]  Cd Length: 110  Bit Score: 51.58  E-value: 5.27e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767962306   8 LNDNIRRGIENYY---DDLDFKNIMDFVQKKFKCCGGEDYRDWSKNQYHDCSAPGPLAcgVPYTCCIRNTT 75
Cdd:cd03155   11 LKESLKRTMQENYgqsGEEALTLTVDELQQEFKCCGSNNYTDWQDSEWINSNEANGRL--VPDSCCKTVVD 79
NET-5_like_LEL cd03165
Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. ...
 2-114 3.13e-08

Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human tetraspan NET-5.


Pssm-ID: 239418 [Multi-domain]  Cd Length: 98  Bit Score: 48.90  E-value: 3.13e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767962306   2 RETID-FLNDNIRRGIENYYDDLD--FKNIMDFVQKKFKCCGGEDYRDWsknqyHDCSAPGPlacgVPYTCCIRNTTEvv 78
Cdd:cd03165    4 REKVDlTAKDDLKEGLELYGTRNNrgLTNAWDITQTEFRCCGVTNYTDW-----YEVLGENR----VPDSCCQEDSQD-- 72

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 767962306  79 ntmCGyktidkeRFSvQDVIYVRGCTNAVIIWFMDN 114
Cdd:cd03165   73 ---CG-------RNP-TELWWKTGCYEKVQQWLVDN 97
uroplakin_I_like_LEL cd03156
Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. ...
 6-115 3.56e-07

Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Uroplakin Ia and Ib are components of the 16nm protein particles, which are packed hexagonally to form 2D crystals of asymmetric unit membranes, and cover the apical surface of mammalian urothelium, contributing to the urinay bladder's permeability barrier function. Uroplakins Ia and Ib are maturation facilitators. They trigger conformational changes in their single-transmembrane-domain binding partner proteins uroplakin II and IIIa, which in turn may lead to ER-exit, stabilization, and cell-surface expression.


Pssm-ID: 239409  Cd Length: 114  Bit Score: 46.76  E-value: 3.56e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767962306   6 DFLNDNIRRGIENYY-DDLDFKNIMDFVQKKFKCCGGEDYRDWSKNQYHDCSAPGPlACGVPYTCCIRNTTEVVNTMCGY 84
Cdd:cd03156   11 DSFKNLLKNNYGNYNsTGDAITSTWNRVMIELKCCGVNGPTDFVDSTSFFRQKNEP-NSPYPESCCKRNSNSQIVDLDCP 89

                         90       100       110
                 ....*....|....*....|....*....|.
gi 767962306  85 KtidkerFSVQDVIYVRGCTNAVIIWFMDNY 115
Cdd:cd03156   90 K------LGSPNSYNKKGCYEKLSNPIERYA 114
TM4SF2_6_like_LEL cd03161
Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. ...
 11-103 1.06e-05

Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4 superfamily 6 (TM4SF6) or Tspan-6, and related proteins. TM4SF2 has been identified as involved in some forms of X-linked mental retardation.


Pssm-ID: 239414  Cd Length: 104  Bit Score: 42.35  E-value: 1.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767962306  11 NIRRGIENYYDDLDFKNIMDFVQKKFKCCGGEDYRDWSKNQYhdcsapgPLACGVPYTCCirntteVVNTMCGYKTIdKE 90
Cdd:cd03161   14 TYNEAVSNYNGDDERSDAVDTVQRTLHCCGVENYTDWLNSPY-------FLEKGIPLSCC------KNRSDCSPQDL-KN 79

                         90
                 ....*....|...
gi 767962306  91 RFSVQDVIYVRGC 103
Cdd:cd03161   80 LTKAATKVYQQGC 92
CD53_like_LEL cd03164
Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. ...
 6-115 1.28e-05

Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.


Pssm-ID: 239417 [Multi-domain]  Cd Length: 86  Bit Score: 41.70  E-value: 1.28e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767962306   6 DFLNDNIRRGIENYYDDLDFKNIMDFVQKKFKCCGGEDYRDWSKnqyhdcsapgplacGVPYTCCIRNTTevvntmcgyk 85
Cdd:cd03164    9 NYVKEGLTDSLEQYHKDNNTSEAWDMIQSNLQCCGINGTTDWGS--------------GVPSSCCSSDTE---------- 64

                         90       100       110
                 ....*....|....*....|....*....|
gi 767962306  86 tidkerfsvqdvIYVRGCTNAVIIWFMDNY 115
Cdd:cd03164   65 ------------YKVEGCYKKLKNWFESNF 82
CD37_CD82_like_LEL cd03160
Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family. ...
 30-115 2.67e-05

Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD37 is a leukocyte-specific protein, and its restricted expression pattern suggests a role in the immune system. A regulatory role in T-cell proliferation has been suggested. CD82 is a metastasis suppressor implicated in biological processes ranging from fusion, adhesion, and migration to apoptosis and alterations of cell morphology.


Pssm-ID: 239413  Cd Length: 117  Bit Score: 41.60  E-value: 2.67e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767962306  30 DFVQKKFKCCGGEDYRDWSKNQYHDCSaPGPLacgVPYTCC---IRNTTEVVNT-MCGYKTidkerfSVQDVIYVRGCTN 105
Cdd:cd03160   37 DYVQFQLQCCGWTGPQDWTDNSLIKNS-SEPL---YPCSCCnssATADSPRPSKgFCEAPA------SLDWPVYQEGCME 106

                         90
                 ....*....|
gi 767962306 106 AVIIWFMDNY 115
Cdd:cd03160  107 KLQSWLNENL 116
peripherin_like_LEL cd03162
Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. ...
 8-70 4.30e-05

Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Peripherin, or RDS (retinal degradation slow) is a glycoprotein expressed in vertebrate photoreceptors, located at the rim of the disc membranes of the photoreceptor outer segments. RDS is thought to play a major role in folding and stacking of the discs. Mutations in RDS have been linked to hereditary retinal dystrophies, which typically exhibit a wide phenotypic spectrum.


Pssm-ID: 239415  Cd Length: 143  Bit Score: 41.65  E-value: 4.30e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767962306   8 LNDNIRRGIEN---YYDDLD------FKNIMDFVQKKFKCCGGEDYRDWSK-----NQYHDCSAPGP------------L 61
Cdd:cd03162    7 LEESLKTGLKNamkFYKDTDtpgrcfLKKTIDMLQIEFQCCGNNGYRDWFEiqwisNRYLDFSSKEVkdriksnvdgryL 86


                 ....*....
gi 767962306  62 ACGVPYTCC 70
Cdd:cd03162   87 TDGVPFSCC 95
TM4SF3_like_LEL cd03154
Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. ...
 24-90 1.26e-03

Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.


Pssm-ID: 239407 [Multi-domain]  Cd Length: 100  Bit Score: 36.63  E-value: 1.26e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767962306  24 DFKNIMDFVQKKFKCCGGEDYRDWSKNQYhdcsapgplacgvPYTC-CIRNTTEVVNTMCGYKTIDKE 90
Cdd:cd03154   32 SVKKSLEKFQKELKCCGLVNGADDWGNDI-------------PASCnCTTTQSDCVVAYYGGSNVYKE 86
Tetraspanin pfam00335
Tetraspanin family;
6-140 1.87e-03

Tetraspanin family;


Pssm-ID: 459767  Cd Length: 183  Bit Score: 37.30  E-value: 1.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767962306    6 DFLNDNIRRGIENYYD-DLDFKNIMDFVQKKFKCCGgedyrdwsknqyhdcsapgplacgvpytccirnttevvntmcgy 84
Cdd:pfam00335 108 NWLKKSLEDGYRDWLDlYSCLNSALDSLQSEFGCCG-------------------------------------------- 143

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 767962306   85 ktidkerfsvqdviyvrGCTNAVIIWFMDNYTIMAGILLGILLPQFLGVLLTLLYI 140
Cdd:pfam00335 144 -----------------GCKEKLLEWLRKNLKIIGAGVIALGVIQLLGIILACCLC 182
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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