NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|768006895|ref|XP_011524837|]
View 

proline and serine-rich protein 3 isoform X14 [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 145-523 6.17e-10

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 63.03  E-value: 6.17e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  145 PDSSKGLGPRAPASPAPAQAQTPTPAPAPASSQAPLRPEDDILYQWRQRRKLEQAQGSKGDRAWVPPLTPALRTLISLIC 224
Cdd:PHA03247 2605 RGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPR 2684

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  225 LQTSPAPVETLSSLGTQPnhvplwssvAQPGPPEAfyverPPFPSVSSphifwAPSSHGFFWAPQSGPWVSLGAVPPTQQ 304
Cdd:PHA03247 2685 RRAARPTVGSLTSLADPP---------PPPPTPEP-----APHALVSA-----TPLPPGPAAARQASPALPAAPAPPAVP 2745

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  305 ASTLAHLGStlAPPASLASTLEPPASTPaPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSscaqPKSLG 384
Cdd:PHA03247 2746 AGPATPGGP--ARPARPPTTAGPPAPAP-PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLA----PAAAL 2818

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  385 PKSRRSRAPRPEAAEQVPAAGQGPGPQlrgvlgqvvaarlFPDSLEDTPPHFEGPPPPKAGSPKVQATQPQTKVTPPPSE 464
Cdd:PHA03247 2819 PPAASPAGPLPPPTSAQPTAPPPPPGP-------------PPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRR 2885

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 768006895  465 SQCRAKAESLKAKALPPAAGSVIRKSEATPSPGACLQPEVPLSPAEQATTVKASPPAFQ 523
Cdd:PHA03247 2886 LARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA 2944
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 145-523 6.17e-10

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 63.03  E-value: 6.17e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  145 PDSSKGLGPRAPASPAPAQAQTPTPAPAPASSQAPLRPEDDILYQWRQRRKLEQAQGSKGDRAWVPPLTPALRTLISLIC 224
Cdd:PHA03247 2605 RGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPR 2684

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  225 LQTSPAPVETLSSLGTQPnhvplwssvAQPGPPEAfyverPPFPSVSSphifwAPSSHGFFWAPQSGPWVSLGAVPPTQQ 304
Cdd:PHA03247 2685 RRAARPTVGSLTSLADPP---------PPPPTPEP-----APHALVSA-----TPLPPGPAAARQASPALPAAPAPPAVP 2745

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  305 ASTLAHLGStlAPPASLASTLEPPASTPaPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSscaqPKSLG 384
Cdd:PHA03247 2746 AGPATPGGP--ARPARPPTTAGPPAPAP-PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLA----PAAAL 2818

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  385 PKSRRSRAPRPEAAEQVPAAGQGPGPQlrgvlgqvvaarlFPDSLEDTPPHFEGPPPPKAGSPKVQATQPQTKVTPPPSE 464
Cdd:PHA03247 2819 PPAASPAGPLPPPTSAQPTAPPPPPGP-------------PPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRR 2885

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 768006895  465 SQCRAKAESLKAKALPPAAGSVIRKSEATPSPGACLQPEVPLSPAEQATTVKASPPAFQ 523
Cdd:PHA03247 2886 LARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA 2944
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 145-523 6.17e-10

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 63.03  E-value: 6.17e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  145 PDSSKGLGPRAPASPAPAQAQTPTPAPAPASSQAPLRPEDDILYQWRQRRKLEQAQGSKGDRAWVPPLTPALRTLISLIC 224
Cdd:PHA03247 2605 RGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPR 2684

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  225 LQTSPAPVETLSSLGTQPnhvplwssvAQPGPPEAfyverPPFPSVSSphifwAPSSHGFFWAPQSGPWVSLGAVPPTQQ 304
Cdd:PHA03247 2685 RRAARPTVGSLTSLADPP---------PPPPTPEP-----APHALVSA-----TPLPPGPAAARQASPALPAAPAPPAVP 2745

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  305 ASTLAHLGStlAPPASLASTLEPPASTPaPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSscaqPKSLG 384
Cdd:PHA03247 2746 AGPATPGGP--ARPARPPTTAGPPAPAP-PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLA----PAAAL 2818

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  385 PKSRRSRAPRPEAAEQVPAAGQGPGPQlrgvlgqvvaarlFPDSLEDTPPHFEGPPPPKAGSPKVQATQPQTKVTPPPSE 464
Cdd:PHA03247 2819 PPAASPAGPLPPPTSAQPTAPPPPPGP-------------PPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRR 2885

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 768006895  465 SQCRAKAESLKAKALPPAAGSVIRKSEATPSPGACLQPEVPLSPAEQATTVKASPPAFQ 523
Cdd:PHA03247 2886 LARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA 2944
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 300-419 8.22e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 52.41  E-value: 8.22e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 300 PPTQQASTLAHLGSTLAPPASLASTLEPPASTPAPLASTLAPPASTPAPLAC-TPAPPASTLASPAVPQGLPI------- 371
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPpAAAPPAPVAAPAAAAPAAAPaaapaav 445

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 768006895 372 ---PDPSSCAQPKSLGPKSRRSRAPRPEAAEQVPAAGQGPGPQLRGVLGQV 419
Cdd:PRK14951 446 alaPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDV 496
PHA03247 PHA03247
large tegument protein UL36; Provisional
 169-523 3.56e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.71  E-value: 3.56e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  169 PAPAPASSQAPLRPEDdilyqwrqrRKLEQAQGSKGDRAWVPPLTPALRTLI-----SLICLQTSPAPVETLSSLGTQPN 243
Cdd:PHA03247 2560 PPAAPDRSVPPPRPAP---------RPSEPAVTSRARRPDAPPQSARPRAPVddrgdPRGPAPPSPLPPDTHAPDPPPPS 2630

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  244 HVPLWSSVAQPGPPEAFYVERPPF----PSVSSPHIFWAPSSHGFFWAPQSGpWVSLGAVPPTQQASTLAHLGSTLAPPA 319
Cdd:PHA03247 2631 PSPAANEPDPHPPPTVPPPERPRDdpapGRVSRPRRARRLGRAAQASSPPQR-PRRRAARPTVGSLTSLADPPPPPPTPE 2709

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  320 SLASTLEPPASTP-APLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSSCAQPKSLGPKSRRSRAPRPEAA 398
Cdd:PHA03247 2710 PAPHALVSATPLPpGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVA 2789

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  399 EQVPAAGQGPGPQlrgVLGQVVAARLFPDSLEDTPPHFEGPPPPKAGSpkVQATQPQTKVTPPPSESQC----------- 467
Cdd:PHA03247 2790 SLSESRESLPSPW---DPADPPAAVLAPAAALPPAASPAGPLPPPTSA--QPTAPPPPPGPPPPSLPLGgsvapggdvrr 2864

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 768006895  468 RAKAESLKAKALPPAAGSVIRKSEATPSPGACLQPEVPLSPAEQATTVKASPPAFQ 523
Cdd:PHA03247 2865 RPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQ 2920
PHA03247 PHA03247
large tegument protein UL36; Provisional
 133-520 5.26e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.32  E-value: 5.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  133 SDGLSPFSETFIPDSSKGLGPRAPASPAPAQaqtptPAPAPASSQAPLRPEDDILYQWrqRRKLEQ-AQGSKGDRAwvPP 211
Cdd:PHA03247 2484 AEARFPFAAGAAPDPGGGGPPDPDAPPAPSR-----LAPAILPDEPVGEPVHPRMLTW--IRGLEElASDDAGDPP--PP 2554

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  212 LTPALRTLI---SLICLQTSPAPVE-TLSSLGTQPNHVPLWSSVAQPG-PPEAFYVERPPFPSVSSPHIFWAPSSHGFFW 286
Cdd:PHA03247 2555 LPPAAPPAApdrSVPPPRPAPRPSEpAVTSRARRPDAPPQSARPRAPVdDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPA 2634

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  287 APQSGPWVSLGAVPPTQQASTlahlgstlapPASLASTLEPPASTPAPLASTLAPPASTPAPLACTPAPPASTLASPAVP 366
Cdd:PHA03247 2635 ANEPDPHPPPTVPPPERPRDD----------PAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPP 2704

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  367 QGLPIPDPS--SCAQPKSLGPKSRRSRAPRPEAAEQVPAAGQGPgpqlrgvlgqvvaarLFPDSLEDTPPHFEGPPPPKA 444
Cdd:PHA03247 2705 PPTPEPAPHalVSATPLPPGPAAARQASPALPAAPAPPAVPAGP---------------ATPGGPARPARPPTTAGPPAP 2769

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 768006895  445 GSPKVQATQPQTKVTPPPSESQCRAKAESLKAKALPPAAGSVIRKSEATPSPGACLQPEVPLSPAEQATTVKASPP 520
Cdd:PHA03247 2770 APPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP 2845
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
297-509 1.85e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 47.95  E-value: 1.85e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 297 GAVPPTQQASTLAhlgsTLAPPASLASTLEPPASTPAPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSS 376
Cdd:PRK12323 371 GAGPATAAAAPVA----QPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG 446

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 377 CAQPKSLGPKSRRSRAPRPEAAEQVPAAGQGPGPQLRGVLGQVVAARLFPDSLEDTPPHFEGPPPPKAGSPKVQAtqpQT 456
Cdd:PRK12323 447 APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGW---VA 523

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 768006895 457 KVTPPPSESQCRAKAESLKAKALPPAAGSVIRKSEATPSPGACLQPEVPLSPA 509
Cdd:PRK12323 524 ESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDM 576
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 287-422 3.36e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.02  E-value: 3.36e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 287 APQSGPWVSLGAVPPTQQASTLAHLGSTLAPPASLASTLEPPASTPAPLASTlAPPASTPAPLACTPAPPAstlasPAVP 366
Cdd:PRK14951 384 PEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPA-AAPAAAPAAVALAPAPPA-----QAAP 457

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 768006895 367 QGLPIPDPsscAQPKSLGPKSRRSRAPRPEAAEQVPAAgqgPGPQLRGVLGQVVAA 422
Cdd:PRK14951 458 ETVAIPVR---VAPEPAVASAAPAPAAAPAAARLTPTE---EGDVWHATVQQLAAA 507
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 326-420 4.56e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.81  E-value: 4.56e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  326 EPPASTPAPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSSCAQPKSlgpksrrSRAPRPEAAEQVPAAG 405
Cdd:PRK12270   40 STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP-------AAPPAAAAAAAPAAAA 112

                          90
                  ....*....|....*.
gi 768006895  406 QGPGPQ-LRGVLGQVV 420
Cdd:PRK12270  113 VEDEVTpLRGAAAAVA 128
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
226-423 9.43e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 45.64  E-value: 9.43e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 226 QTSPAPVETLSSLGTQPNHVPLWSSVAQPGPPEAFYVERPPFPSVSSPHIfwapsshgffwAPQSGPWVSLGAVPPTQQA 305
Cdd:PRK12323 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVA-----------AAPARRSPAPEALAAARQA 439

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 306 STLAHLGSTLAPPAslastlepPASTPAPLASTLAPPASTPAPLACTPAPPASTLASPA-----------VPQGLPIPDP 374
Cdd:PRK12323 440 SARGPGGAPAPAPA--------PAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPApadddpppweeLPPEFASPAP 511

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 768006895 375 ----SSCAQPKSLGPKSRRSRAPRPEAAEQVPAAGQGPGPQLRGVLGQVVAAR 423
Cdd:PRK12323 512 aqpdAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPR 564
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
296-401 1.77e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 44.77  E-value: 1.77e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 296 LGAVPPTQQASTLAHLGStlapPASLASTLEPPASTPAPLASTLAPPASTPAPLAcTPAPPASTLASPAVPQGLPIPDPS 375
Cdd:PRK14971 384 TQPAAAPQPSAAAAASPS----PSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAA-VPVNPPSTAPQAVRPAQFKEEKKI 458

                         90       100
                 ....*....|....*....|....*.
gi 768006895 376 SCAQPKSLGPKSRRsraPRPEAAEQV 401
Cdd:PRK14971 459 PVSKVSSLGPSTLR---PIQEKAEQA 481
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 287-422 1.95e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.98  E-value: 1.95e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 287 APQSGPWVSLGAVPPTQQASTLAHLGSTLAPPASLAstlePPASTPAPLASTLAPPASTPAPlacTPAPPASTLASPAVP 366
Cdd:PRK07764 380 RLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAA----APAAAAAPAPAAAPQPAPAPAP---APAPPSPAGNAPAGG 452

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 367 QGLPIPDPSSCAQPK---------SLGPKSRRSRAPRPEAAEQVPAA-----GQGPGPQLRGVLGQVVAA 422
Cdd:PRK07764 453 APSPPPAAAPSAQPApapaaapepTAAPAPAPPAAPAPAAAPAAPAApaapaGADDAATLRERWPEILAA 522
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 127-408 1.97e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.78  E-value: 1.97e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  127 SSFPTSSDGLSPFSETFIPDSSKGLGPRAPASPAPAQAQTPTPAPAPAS-SQAPLRPEDDILYQWRQRRKLEQAQGSKGD 205
Cdd:PHA03307   84 SRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPdLSEMLRPVGSPGPPPAASPPAAGASPAAVA 163

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  206 RAWVPPLTPAlrtLISLICLQTSPAPVETLSSLGTQPNHVPLWSSVAQPGPPEAFYVERPP--------FPSVSSPHIFW 277
Cdd:PHA03307  164 SDAASSRQAA---LPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPApapgrsaaDDAGASSSDSS 240

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  278 APSSHGFFWAPQS---GPWVSLGAVPPTQQASTLAHLGSTLAPPASLASTLEPPASTPAPLASTLAPPASTPAPLAC--- 351
Cdd:PHA03307  241 SSESSGCGWGPENecpLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSsss 320

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 768006895  352 -TPAPPASTLASPAVPQGLPIPDPSSCAQPKSLGPKSRRSRAPRPEAAEQVPAAGQGP 408
Cdd:PHA03307  321 sRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSP 378
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
278-411 2.84e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 44.46  E-value: 2.84e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 278 APSSHGFFWAPQSGPWVSLGAVPPTQQASTLAHLGSTLAPPASLA-----STLEPPASTPAPLASTLAPPASTPAPLACT 352
Cdd:PRK07003 387 AAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAppataDRGDDAADGDAPVPAKANARASADSRCDER 466

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 768006895 353 PAPPASTLASPAVPQGLPIPDPSSCAQPKSLGPKSRRSRAPRPEAAEQVPAAGQGPGPQ 411
Cdd:PRK07003 467 DAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAA 525
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 297-486 3.22e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.21  E-value: 3.22e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 297 GAVPPTQQASTLAHLGSTLAPPASLASTLEPPASTPAPLASTLAPPASTPAPLACTPAPPASTLASPAV-----PQGLPI 371
Cdd:PRK07764 594 AAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDAsdggdGWPAKA 673

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 372 PDPSSCAQPKSLGPKSRRSRAPRPEAAEQ-----VPAAGQGPGPQLRGVLGQVVAARLFPDSLEDTPPHFEGPPPPKAGS 446
Cdd:PRK07764 674 GGAAPAAPPPAPAPAAPAAPAGAAPAQPApapaaTPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAG 753

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 768006895 447 PKVQATQPQTKVTPPPSESQCRAKAESLKAKALPPAAGSV 486
Cdd:PRK07764 754 APAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSM 793
PHA03378 PHA03378
EBNA-3B; Provisional
 256-496 1.38e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 41.98  E-value: 1.38e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 256 PPEAFYVERPPfPSVSSPHIFWAPSSHGFFWAPQSGPwvslGAVPPTQQASTLAHlgstlaPPASLASTLEPPASTP--- 332
Cdd:PHA03378 706 PPAAPPGRAQR-PAAATGRARPPAAAPGRARPPAAAP----GRARPPAAAPGRAR------PPAAAPGRARPPAAAPgap 774

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 333 APLASTLAPPA------STPAPLACTPAPPASTLASPAVPQGLPIPDPSSCAQPKSLGPKSRRSRAPRPEAAEQVPAAGQ 406
Cdd:PHA03378 775 TPQPPPQAPPApqqrprGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKRGRPSLKKPAALERQAAAGP 854

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 407 GPGPQLRGVLGQVVAARLFPDSLEdtpphfEGPPPPKAGSPKVQATQPQTKVtpPPSESQCRAKAESLKAKALPPAAGSv 486
Cdd:PHA03378 855 TPSPGSGTSDKIVQAPVFYPPVLQ------PIQVMRQLGSVRAAAASTVTQA--PTEYTGERRGVGPMHPTDIPPSKRA- 925

                        250
                 ....*....|
gi 768006895 487 irKSEATPSP 496
Cdd:PHA03378 926 --KTDAYVES 933
PRK11855 PRK11855
dihydrolipoamide acetyltransferase; Reviewed
 312-412 1.57e-03

dihydrolipoamide acetyltransferase; Reviewed


Pssm-ID: 237000 [Multi-domain]  Cd Length: 547  Bit Score: 41.73  E-value: 1.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 312 GSTLAPPASLASTLEPPASTPAPLASTLAPPASTPAPLACTPAPPASTLASPAVPQ-----GLPIpdpsscAQPKSLGPK 386
Cdd:PRK11855 196 AAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRlarelGVDL------SQVKGTGKK 269

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 768006895 387 SR----------RSRAPRPEAAEQVPAAGQGPGPQL 412
Cdd:PRK11855 270 GRitkedvqafvKGAMSAAAAAAAAAAAAGGGGLGL 305
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
328-521 1.97e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 41.37  E-value: 1.97e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 328 PASTPAPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSSCAQPKSLGPKSRRSRAPRPEAAEQVPAAGQG 407
Cdd:PRK07003 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRG 439

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 408 PGPQLRGVLGQVVAARLFPDSLEDTPPHFEGPPPPKAGSPKVQATQPQTKVTPPPSESQCRAKAESLKAKALPPAAGSvi 487
Cdd:PRK07003 440 DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAAS-- 517

                        170       180       190
                 ....*....|....*....|....*....|....
gi 768006895 488 RKSEATPspgaclqPEVPLSPAEQATTVKASPPA 521
Cdd:PRK07003 518 REDAPAA-------AAPPAPEARPPTPAAAAPAA 544
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
292-524 2.73e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.99  E-value: 2.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 292 PWVSLGAVPPTQQASTLAhlGSTLAPPASLASTLEPPASTPAPLAStlAPPASTPAPLACTPAPPASTLASPAVPQGLPI 371
Cdd:PRK07003 360 PAVTGGGAPGGGVPARVA--GAVPAPGARAAAAVGASAVPAVTAVT--GAAGAALAPKAAAAAAATRAEAPPAAPAPPAT 435

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 372 PDP--SSCAQPKSLGPKSRRSRAPRPEAAEQVPAAGQGPGPQLRGVLGQVVAARLFPDSLEDTPPHFEGPPPPKAGSPkv 449
Cdd:PRK07003 436 ADRgdDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAP-- 513

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 450 qATQPQTKVTPPPSESQCRAKAESLKAKALPPAAG------SVIRK------SEATPSPGACLQPEVPLSPAEQATtvkA 517
Cdd:PRK07003 514 -AAASREDAPAAAAPPAPEARPPTPAAAAPAARAGgaaaalDVLRNagmrvsSDRGARAAAAAKPAAAPAAAPKPA---A 589


                 ....*..
gi 768006895 518 SPPAFQV 524
Cdd:PRK07003 590 PRVAVQV 596
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 314-411 4.33e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 40.18  E-value: 4.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 314 TLAPPASLASTLEPPASTPAPLASTLAPpASTPAPLACTPAPPASTLASPAVPQGLPI-PDPSSCAQPKSLGPKSRRSRA 392
Cdd:PRK14950 358 ALLVPVPAPQPAKPTAAAPSPVRPTPAP-STRPKAAAAANIPPKEPVRETATPPPVPPrPVAPPVPHTPESAPKLTRAAI 436

                         90
                 ....*....|....*....
gi 768006895 393 PRPEAAEqvpaaGQGPGPQ 411
Cdd:PRK14950 437 PVDEKPK-----YTPPAPP 450
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 312-405 7.30e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 39.72  E-value: 7.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 312 GSTLAPPASLASTLE--------------PPASTPAPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSSC 377
Cdd:PRK14965 358 MATLAPGAPVSELLDrlealergapappsAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARS 437

                         90       100
                 ....*....|....*....|....*...
gi 768006895 378 AQPKSLGPKSRRSRAPRPEAAEQVPAAG 405
Cdd:PRK14965 438 ADPAAAASAGDRWRAFVAFVKGKKPALG 465
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 279-373 8.18e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 39.49  E-value: 8.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895  279 PSSHGFFWAPQSGPwvslgaVPPTQQASTLAHLGSTLAPPASLASTLEPPASTPAPLASTLAPPASTPAPLACTPAPPAS 358
Cdd:PRK12270   27 PSWREFFADYGPGS------TAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPP 100

                          90
                  ....*....|....*
gi 768006895  359 TLASPAVPQGLPIPD 373
Cdd:PRK12270  101 AAAAAAAPAAAAVED 115
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 317-404 8.32e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 39.46  E-value: 8.32e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 317 PPASLASTLEPPAST-PAPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSSCAQPKS-LGPKSRRSRAPR 394
Cdd:PRK07994 361 PAAPLPEPEVPPQSAaPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQqLQRAQGATKAKK 440

                         90
                 ....*....|
gi 768006895 395 PEAAEQVPAA 404
Cdd:PRK07994 441 SEPAAASRAR 450
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 238-410 8.93e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.58  E-value: 8.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 238 LGTQPNHVPLWSSVAQPGPPEAFYVERPPFPSVSSPHIFWAPSSHGFFWAPQSGPWVSLGAVPPTQQASTLAHLGSTLAP 317
Cdd:PRK07764 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGD 667

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006895 318 PASLASTLEPPASTPAPLASTLAPPASTPAPLACTPAPPASTLASPAVPqglPIPDPSSCAQPKSLGPKSRRSRAPRPEA 397
Cdd:PRK07764 668 GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADD---PAAQPPQAAQGASAPSPAADDPVPLPPE 744

                        170
                 ....*....|...
gi 768006895 398 AEQVPAAGQGPGP 410
Cdd:PRK07764 745 PDDPPDPAGAPAQ 757
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH