|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
768-1079 |
3.20e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.75 E-value: 3.20e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 768 QQERERARqRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSALtRALRAEFEKGREEQ 847
Cdd:COG1196 206 ERQAEKAE-RYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAEL-EELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 848 ERRHQMELNTLKQQLELERQaweagrtrkermspqeawlLNREQELREEIRKgRDKEIELVIHRLEADMALAKEESEKAA 927
Cdd:COG1196 284 EEAQAEEYELLAELARLEQD-------------------IARLEERRRELEE-RLEELEEELAELEEELEELEEELEELE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 928 ESRIKRlrdkyEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQ 1007
Cdd:COG1196 344 EELEEA-----EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER 418
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767994131 1008 EFEDRLAASEEETRQAKAELATLQARQQLELEEvhRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1079
Cdd:COG1196 419 LEEELEELEEALAELEEEEEEEEEALEEAAEEE--AELEEEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
575-1054 |
7.57e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.60 E-value: 7.57e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 575 RLKLEVEEKKQAMLLLQRALA---QQRDLTARRVKETEKALsRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAV 651
Cdd:COG1196 278 ELELELEEAQAEEYELLAELArleQDIARLEERRRELEERL-EELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 652 VAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEvtvrglepEIQKLIARHKQEVRRLKS 731
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEE--------ALLERLERLEEELEELEE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 732 LHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQA 811
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 812 ARQRAELE-----------ELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKERMS 880
Cdd:COG1196 509 GVKAALLLaglrglagavaVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAAL 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 881 PQEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELK 960
Cdd:COG1196 589 AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR 668
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 961 GQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQviRQEFEDRLAASEEETRQAKAELATLQARQQLE--- 1037
Cdd:COG1196 669 ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE--AEEERLEEELEEEALEEQLEAEREELLEELLEeee 746
|
490 500 510
....*....|....*....|....*....|..
gi 767994131 1038 ---------------LEEVHRRVKTALARKEE 1054
Cdd:COG1196 747 lleeealeelpeppdLEELERELERLEREIEA 778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
577-1082 |
8.63e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 79.80 E-value: 8.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 577 KLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAELK 656
Cdd:PTZ00121 1244 KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKK 1323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 657 QEDQRCTERVAQAQAQhelEIKKLKELMSATEKARREKwiSEKTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSLHEAE 736
Cdd:PTZ00121 1324 AEEAKKKADAAKKKAE---EAKKAAEAAKAEAEAAADE--AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK 1398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 737 LLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEV---AEERERLGQ--QA 811
Cdd:PTZ00121 1399 KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAkkkAEEAKKADEakKK 1478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 812 ARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMelntlKQQLELERQAWEAGRTRKERMSPQEawllNREQ 891
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEE-----AKKADEAKKAEEAKKADEAKKAEEK----KKAD 1549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 892 ELR--EEIRKGRDKEIELVIHRLEAD--MALAK-EESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKgQLGEA 966
Cdd:PTZ00121 1550 ELKkaEELKKAEEKKKAEEAKKAEEDknMALRKaEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE-ELKKA 1628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 967 EGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASE----EETRQAKAELATLQARQQLELEEVH 1042
Cdd:PTZ00121 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEakkaEEDEKKAAEALKKEAEEAKKAEELK 1708
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 767994131 1043 RRVKTALARKEEavssLRTQHEAAVKRADHLEELLEQHRR 1082
Cdd:PTZ00121 1709 KKEAEEKKKAEE----LKKAEEENKIKAEEAKKEAEEDKK 1744
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
791-1077 |
1.73e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.56 E-value: 1.73e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 791 QQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREeqerrhqmeLNTLKQQLELERQAWE 870
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQ---------ISALRKDLARLEAEVE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 871 AGRTRKERMSPQEAWLLNREQELREEIRKGRD--KEIELVIHRLEADMALAKEESeKAAESRIKRLRdkyeAELSELEQS 948
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEelAEAEAEIEELEAQIEQLKEEL-KALREALDELR----AELTLLNEE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 949 ERKLQERCSELKGQLGEAEgenLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQ--EFEDRLAASEEETRQAKAE 1026
Cdd:TIGR02168 819 AANLRERLESLERRIAATE---RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEleALLNERASLEEALALLRSE 895
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 767994131 1027 LATLQARQQlELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELL 1077
Cdd:TIGR02168 896 LEELSEELR-ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
718-1067 |
3.44e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 3.44e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 718 LIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALgQQERERARQRFQQHLEQEQwALQQQRQRLy 797
Cdd:COG1196 231 LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEEL-ELELEEAQAEEYELLAELA-RLEQDIARL- 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 798 sevAEERERLGQQAARQRAELEELRQQLEESSSALTRAlraefekgrEEQERRHQMELNTLKQQLELERQAweagrtrke 877
Cdd:COG1196 308 ---EERRRELEERLEELEEELAELEEELEELEEELEEL---------EEELEEAEEELEEAEAELAEAEEA--------- 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 878 rmspqeawLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCS 957
Cdd:COG1196 367 --------LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 958 ELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLE 1037
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
|
330 340 350
....*....|....*....|....*....|
gi 767994131 1038 LEEVHRRVKTALARKEEAVSSLRTQHEAAV 1067
Cdd:COG1196 519 LRGLAGAVAVLIGVEAAYEAALEAALAAAL 548
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
280-1078 |
9.53e-14 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 76.33 E-value: 9.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 280 RHQVQRRGAGAARLEhllQAKREEQRQRSGEGTLLDLHQQKEAARRKAREEKARQARRAAiqelQQKRALRAQKASTAER 359
Cdd:PTZ00121 1165 KAEEARKAEDAKKAE---AARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAE----DAKKAEAVKKAEEAKK 1237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 360 GPPENPRETRVpgmRQPAQELSPTPGGTAHQALKANNTGGGLPAAGPGDRCLPTSDSSPEPQQPPEDRTQDVLaqdaagd 439
Cdd:PTZ00121 1238 DAEEAKKAEEE---RNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEA------- 1307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 440 nlemmapsRGSAKSRGPLEELLHTLQLLEKEPDVLPRPrthhrgryawASEVTTEDDASSLTADNLEKfgKLSAFPEPPE 519
Cdd:PTZ00121 1308 --------KKKAEEAKKADEAKKKAEEAKKKADAAKKK----------AEEAKKAAEAAKAEAEAAAD--EAEAAEEKAE 1367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 520 DGTL-LSEAKLQSIMSFLDEMEKSGQDQLDSQQEGWVPEAGPgpLELGSEVSTSVMRLKLEVEEKKQAMLLLQRALAQQR 598
Cdd:PTZ00121 1368 AAEKkKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE--LKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 599 DLTARRVKETEKALSRQLQRQREHYEATiqrhlafidqliEDKKVLSEKCEAvvAELKQEDQRCTERVAQAQAQHElEIK 678
Cdd:PTZ00121 1446 ADEAKKKAEEAKKAEEAKKKAEEAKKAD------------EAKKKAEEAKKA--DEAKKKAEEAKKKADEAKKAAE-AKK 1510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 679 KLKELMSATEKARREKW-ISEKTKKIKEVtvRGLEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELRE 757
Cdd:PTZ00121 1511 KADEAKKAEEAKKADEAkKAEEAKKADEA--KKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK 1588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 758 QLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSsaltraLR 837
Cdd:PTZ00121 1589 AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENK------IK 1662
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 838 AEFEKGREEQERRHQMElntLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELR--EEIRKGRDkeielvIHRLEAD 915
Cdd:PTZ00121 1663 AAEEAKKAEEDKKKAEE---AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKkaEELKKAEE------ENKIKAE 1733
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 916 MALAKEESEKaaesrikrlRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLvrqKERALEDAQAVNEQLS 995
Cdd:PTZ00121 1734 EAKKEAEEDK---------KKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL---DEEDEKRRMEVDKKIK 1801
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 996 SERSNLAQVIRQEFEDRLA--ASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHL 1073
Cdd:PTZ00121 1802 DIFDNFANIIEGGKEGNLVinDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDE 1881
|
....*
gi 767994131 1074 EELLE 1078
Cdd:PTZ00121 1882 EEIEE 1886
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
606-1082 |
4.38e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 4.38e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 606 KETEKALS-RQLQRQREHYEATIQrhLAFIDQLIEDKKVLsekcEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELM 684
Cdd:COG1196 207 RQAEKAERyRELKEELKELEAELL--LLKLRELEAELEEL----EAELEELEAELEELEAELAELEAELEELRLELEELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 685 SATEKARREkwISEKTKKIKEvtvrgLEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRclRQAEELREQLEREKE 764
Cdd:COG1196 281 LELEEAQAE--EYELLAELAR-----LEQDIARLEERRRELEERLEELEEELAELEEELEELE--EELEELEEELEEAEE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 765 AL--------GQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSALTRAL 836
Cdd:COG1196 352 ELeeaeaelaEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 837 RAEFEKGREEQERRHQME---------------LNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELRE------ 895
Cdd:COG1196 432 ELEEEEEEEEEALEEAAEeeaeleeeeeallelLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGflegvk 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 896 ----------------EIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSEL 959
Cdd:COG1196 512 aalllaglrglagavaVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAA 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 960 KGQLGEAEGENLRLQGLVRQKERA-LEDAQAVNEQLSSERSNLAQVIRQEFEDRLAAS--EEETRQAKAELATLQARQQL 1036
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYyVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVtlEGEGGSAGGSLTGGSRRELL 671
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 767994131 1037 ELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1082
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERL 717
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
776-1081 |
5.04e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 5.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 776 QRFQQHLEQEQWALQQQRqrlYSEVAEERERLGQQAARQRAELEELRQQLEESSSALTRaLRAEFEKGREEQERR----- 850
Cdd:TIGR02168 216 KELKAELRELELALLVLR---LEELREELEELQEELKEAEEELEELTAELQELEEKLEE-LRLEVSELEEEIEELqkely 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 851 -HQMELNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELREEIrkgrdKEIELVIHRLEADMALAKEESEKAaes 929
Cdd:TIGR02168 292 aLANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL-----AELEEKLEELKEELESLEAELEEL--- 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 930 rikrlrdkyEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEF 1009
Cdd:TIGR02168 364 ---------EAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE 434
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767994131 1010 EDRLAASEEETRQAKAELATLQARQQLELEEVHRRvktaLARKEEAVSSLRTQHEAAVKRADHLEELLEQHR 1081
Cdd:TIGR02168 435 LKELQAELEELEEELEELQEELERLEEALEELREE----LEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
818-1082 |
4.43e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.27 E-value: 4.43e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 818 LEELRQQLEESSSALTRALRAeFEKGREEQERRHQM---ELNTLKQQLELERQAWEAGRTRKERmspQEAWLLNREQELR 894
Cdd:COG1196 195 LGELERQLEPLERQAEKAERY-RELKEELKELEAELlllKLRELEAELEELEAELEELEAELEE---LEAELAELEAELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 895 EeirkgrdkeIELVIHRLEADMALAKEEsEKAAESRIKRLRDKYEAELSELEQSER---KLQERCSELKGQLGEAEGENL 971
Cdd:COG1196 271 E---------LRLELEELELELEEAQAE-EYELLAELARLEQDIARLEERRRELEErleELEEELAELEEELEELEEELE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 972 RLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEvhRRVKTALAR 1051
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAE--EALLERLER 418
|
250 260 270
....*....|....*....|....*....|.
gi 767994131 1052 KEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1082
Cdd:COG1196 419 LEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
698-1033 |
1.16e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 1.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 698 EKTKKIKEVT--VRGLEPEIQKLiarhKQEVRRLKslHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERAR 775
Cdd:TIGR02168 674 ERRREIEELEekIEELEEKIAEL----EKALAELR--KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 776 QRFQQHLEQEQwaLQQQRQRLYSEVAEERERLgqqaarqrAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMEL 855
Cdd:TIGR02168 748 RIAQLSKELTE--LEAEIEELEERLEEAEEEL--------AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 856 NTLKQQLELERQAWEAGRTRkermspqeawllnREQELREEIRKGRDKEIELVIHRLEaDMALAKEESEKAAESrikrlr 935
Cdd:TIGR02168 818 EAANLRERLESLERRIAATE-------------RRLEDLEEQIEELSEDIESLAAEIE-ELEELIEELESELEA------ 877
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 936 dkYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAA 1015
Cdd:TIGR02168 878 --LLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEE 955
|
330
....*....|....*...
gi 767994131 1016 SEEETRQAKAELATLQAR 1033
Cdd:TIGR02168 956 AEALENKIEDDEEEARRR 973
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
567-1079 |
1.87e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 1.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 567 SEVSTSVMRLKLEVEEKKQAMLLLQRAL----AQQRDLTARrvKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKK 642
Cdd:TIGR02168 263 QELEEKLEELRLEVSELEEEIEELQKELyalaNEISRLEQQ--KQILRERLANLERQLEELEAQLEELESKLDELAEELA 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 643 VLSEKCEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELmsaTEKARREKWISEKTKKIKEvTVRGLEPEIQKLIARH 722
Cdd:TIGR02168 341 ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL---ETLRSKVAQLELQIASLNN-EIERLEARLERLEDRR 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 723 KQEVRRLKSlHEAELLQSDERASQRCLRQAEELREQLEREKEALgQQERERARQRFQQhLEQEQWALQQQRQRLYSEVAE 802
Cdd:TIGR02168 417 ERLQQEIEE-LLKKLEEAELKELQAELEELEEELEELQEELERL-EEALEELREELEE-AEQALDAAERELAQLQARLDS 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 803 ERERLGQQAARQRAELEELRQQL----------------EESSSALTRALRA-----------------EFEKgREEQER 849
Cdd:TIGR02168 494 LERLQENLEGFSEGVKALLKNQSglsgilgvlselisvdEGYEAAIEAALGGrlqavvvenlnaakkaiAFLK-QNELGR 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 850 RHQMELNTLKQQL----ELERQAWEAG--------RTRKERMSPQEAWLLNR---------EQELREEIRKG-------- 900
Cdd:TIGR02168 573 VTFLPLDSIKGTEiqgnDREILKNIEGflgvakdlVKFDPKLRKALSYLLGGvlvvddldnALELAKKLRPGyrivtldg 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 901 ----------------------RDKEIElvihRLEADMALAkEESEKAAESRIKRLRDKYEAELSELEQSERKLQE---R 955
Cdd:TIGR02168 653 dlvrpggvitggsaktnssileRRREIE----ELEEKIEEL-EEKIAELEKALAELRKELEELEEELEQLRKELEElsrQ 727
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 956 CSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIrQEFEDRLAASEEETRQAKAELATLQaRQQ 1035
Cdd:TIGR02168 728 ISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL-AEAEAEIEELEAQIEQLKEELKALR-EAL 805
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 767994131 1036 LELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1079
Cdd:TIGR02168 806 DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
638-1007 |
2.57e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.09 E-value: 2.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 638 IEDKKVLSEKCEAVVAELKQEDQRCTERVAQAQAQHELEIKK----LKELMSATEKARREK-----WISEKTKKIKEVTV 708
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKreyeGYELLKEKEALERQKeaierQLASLEEELEKLTE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 709 R--GLEPEIQKLIARHKQEVRRLKSLHEAELL--QSDERASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQ 784
Cdd:TIGR02169 259 EisELEKRLEEIEQLLEELNKKIKDLGEEEQLrvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 785 EQWALQQQRQRLysevaeERERLGQQAARQRAELEELRQQLEESSSALtRALRAEFEKGREEQERrHQMELNTLKQqlEL 864
Cdd:TIGR02169 339 EELEREIEEERK------RRDKLTEEYAELKEELEDLRAELEEVDKEF-AETRDELKDYREKLEK-LKREINELKR--EL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 865 ERQAWEAGRTRKERmspqeawllnreQELREEIRKGRDKEIELVIHRLEADMALAKEESEKaaeSRIKRLRDKYEAELSE 944
Cdd:TIGR02169 409 DRLQEELQRLSEEL------------ADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL---EQLAADLSKYEQELYD 473
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767994131 945 LEQSERKLQERCSELKGQLGEAEGEnlrlqglVRQKERALEDAQAVNEQLSSERSNLAQVIRQ 1007
Cdd:TIGR02169 474 LKEEYDRVEKELSKLQRELAEAEAQ-------ARASEERVRGGRAVEEVLKASIQGVHGTVAQ 529
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
676-1041 |
3.26e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.70 E-value: 3.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 676 EIKKLKELMSATEKARREkwisektkkIKEVTVRglEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQaeel 755
Cdd:TIGR02169 161 EIAGVAEFDRKKEKALEE---------LEEVEEN--IERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEG---- 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 756 rEQLEREKEALGQQERERARQRfqQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEE----LRQQLEESSSA 831
Cdd:TIGR02169 226 -YELLKEKEALERQKEAIERQL--ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEeqlrVKEKIGELEAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 832 LTRALRAEFEKGREEQ---ERRHQMELNTLKQQLELERQAWEAGRTRKERMSpqeawLLNREQELREEIRKGRDKeielv 908
Cdd:TIGR02169 303 IASLERSIAEKERELEdaeERLAKLEAEIDKLLAEIEELEREIEEERKRRDK-----LTEEYAELKEELEDLRAE----- 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 909 IHRLEADMALAKEESeKAAESRIkrlrDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQ 988
Cdd:TIGR02169 373 LEEVDKEFAETRDEL-KDYREKL----EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKA 447
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 767994131 989 AVNEQLSSERSNLAQV---IRQEFEDR---LAASEEETRQAKAELATLQARQQLELEEV 1041
Cdd:TIGR02169 448 LEIKKQEWKLEQLAADlskYEQELYDLkeeYDRVEKELSKLQRELAEAEAQARASEERV 506
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
712-914 |
1.12e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 62.63 E-value: 1.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 712 EPEIQKLIARHKQEVRRLKSLHEAELlqsDERASQRCLRQAEELREQLEREKEALGQQERERAR------QRFQQHLEQE 785
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALE---DAREQIELLEPIRELAERYAAARERLAELEYLRAAlrlwfaQRRLELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 786 QWALQQQRQRLysevAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERR------HQMELNTLK 859
Cdd:COG4913 297 LEELRAELARL----EAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERerrrarLEALLAALG 372
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767994131 860 QQLELERQAWEAGR----TRKERMSPQEAWLLNREQELREEIRKGRD--KEIELVIHRLEA 914
Cdd:COG4913 373 LPLPASAEEFAALRaeaaALLEALEEELEALEEALAEAEAALRDLRRelRELEAEIASLER 433
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
605-899 |
1.16e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 1.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 605 VKETEKALSRqLQRQREHYEATIQ-----RHLAfIDQLIEDKKVLSEKCEAVVAELKQEDQRCTERVAQAQAQHEleikK 679
Cdd:TIGR02168 195 LNELERQLKS-LERQAEKAERYKElkaelRELE-LALLVLRLEELREELEELQEELKEAEEELEELTAELQELEE----K 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 680 LKELMSatEKARREKWISEKTKKIKEVT--VRGLEPEIQKLIARHKQEVRRLKSLhEAELLQSDERASQRCLRQAEELRE 757
Cdd:TIGR02168 269 LEELRL--EVSELEEEIEELQKELYALAneISRLEQQKQILRERLANLERQLEEL-EAQLEELESKLDELAEELAELEEK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 758 QLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERerlgQQAARQRAELEELRQQLEESSSALTRA-- 835
Cdd:TIGR02168 346 LEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE----LQIASLNNEIERLEARLERLEDRRERLqq 421
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767994131 836 -LRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELREEIRK 899
Cdd:TIGR02168 422 eIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQ 486
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
581-1082 |
5.08e-09 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 60.75 E-value: 5.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 581 EEKKQAMLLLQRALAQQRDLTArrVKETEKALSRQLQRQREHYEATIQRHLAFIDqliedkkvlsEKCEAVVAELKQEDQ 660
Cdd:TIGR00618 369 EISCQQHTLTQHIHTLQQQKTT--LTQKLQSLCKELDILQREQATIDTRTSAFRD----------LQGQLAHAKKQQELQ 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 661 RCTERVAQAQAQHELEIKKLKELMsATEKARREKWISEKTKKIKEVTVRglEPEIQKLIARHKQEVRRLKSLHEAELLQS 740
Cdd:TIGR00618 437 QRYAELCAAAITCTAQCEKLEKIH-LQESAQSLKEREQQLQTKEQIHLQ--ETRKKAVVLARLLELQEEPCPLCGSCIHP 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 741 DERASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQeQWALQQQRQRLysevAEERERLGQQAARQRAELEE 820
Cdd:TIGR00618 514 NPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQ-RASLKEQMQEI----QQSFSILTQCDNRSKEDIPN 588
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 821 LRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELREEIRKG 900
Cdd:TIGR00618 589 LQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIR 668
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 901 RDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQ- 979
Cdd:TIGR00618 669 VLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKEl 748
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 980 --------KERALEDAQA-----VNEQLSSERSNLAQVI------RQEFEDRLAASEEETRQAKAELATLQARQQLELEE 1040
Cdd:TIGR00618 749 mhqartvlKARTEAHFNNneevtAALQTGAELSHLAAEIqffnrlREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQ 828
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 767994131 1041 VHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1082
Cdd:TIGR00618 829 EEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAK 870
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
584-1082 |
8.02e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 59.78 E-value: 8.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 584 KQAMLLLQRALAQQRDLTARRVKETEKALsRQLQRQREHYEATIQRhLAFIDQLIEDKKVLSEKCEAVVAELKQEDQRCT 663
Cdd:COG4717 52 EKEADELFKPQGRKPELNLKELKELEEEL-KEAEEKEEEYAELQEE-LEELEEELEELEAELEELREELEKLEKLLQLLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 664 ERVAQAQAQHELE--IKKLKELmsateKARREKWISektkkiKEVTVRGLEPEIQKLiARHKQEVRRLKSLHEAELLQSD 741
Cdd:COG4717 130 LYQELEALEAELAelPERLEEL-----EERLEELRE------LEEELEELEAELAEL-QEELEELLEQLSLATEEELQDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 742 ERASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQ--RLYSEVAEERERLGQQAARQRAELE 819
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLllLIAAALLALLGLGGSLLSLILTIAG 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 820 ELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQlelERQAWEAGRTRKERMSPQEA-WLLNREQELREEIR 898
Cdd:COG4717 278 VLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEE---ELEELLAALGLPPDLSPEELlELLDRIEELQELLR 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 899 KGRDKEIELVIHRLE----ADMALAKEESEKAAESRIKRLRDKyeaelseleqseRKLQERCSELKGQLGEAEGENLRLQ 974
Cdd:COG4717 355 EAEELEEELQLEELEqeiaALLAEAGVEDEEELRAALEQAEEY------------QELKEELEELEEQLEELLGELEELL 422
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 975 glvrqkerALEDAQAVNEQLssersnlaqvirQEFEDRLAASEEETRQAKAELATLQAR-QQLELEEVHRRVKTALARKE 1053
Cdd:COG4717 423 --------EALDEEELEEEL------------EELEEELEELEEELEELREELAELEAElEQLEEDGELAELLQELEELK 482
|
490 500
....*....|....*....|....*....
gi 767994131 1054 EAVSSLRTQHEAAVKRADHLEELLEQHRR 1082
Cdd:COG4717 483 AELRELAEEWAALKLALELLEEAREEYRE 511
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
537-1081 |
8.50e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.15 E-value: 8.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 537 DEMEKSGQDQLDSQQEGWVPEAGPGPLELGSEVSTSvmrlklevEEKKQAMLLLQRALAQQRDLTARRVKETEKAL-SRQ 615
Cdd:PTZ00121 1082 DAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKA--------EEAKKKAEDARKAEEARKAEDARKAEEARKAEdAKR 1153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 616 LQRQREHYEAtiqrHLAFIDQLIEDKKVLSEKCEAVVAElKQEDQRCTERVAQAQAQHELE-IKKLKELMSATEKARREK 694
Cdd:PTZ00121 1154 VEIARKAEDA----RKAEEARKAEDAKKAEAARKAEEVR-KAEELRKAEDARKAEAARKAEeERKAEEARKAEDAKKAEA 1228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 695 WISEKTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREK----------- 763
Cdd:PTZ00121 1229 VKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKaeekkkadeak 1308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 764 -----------------------EALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAE---ERERLGQQAARQRAE 817
Cdd:PTZ00121 1309 kkaeeakkadeakkkaeeakkkaDAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEkkkEEAKKKADAAKKKAE 1388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 818 ----LEELRQQLEESSSALTRALRAEFEKGREEQERRHQMEL---NTLKQQLELERQAWEAGRTRKERMSPQEAWLLNRE 890
Cdd:PTZ00121 1389 ekkkADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKkkaDEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE 1468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 891 QELREEIRKGRDKEielviHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEA-EGE 969
Cdd:PTZ00121 1469 AKKADEAKKKAEEA-----KKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAkKAE 1543
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 970 NLRLQGLVRQKE---RALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEvhRRVK 1046
Cdd:PTZ00121 1544 EKKKADELKKAEelkKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE--AKIK 1621
|
570 580 590
....*....|....*....|....*....|....*....
gi 767994131 1047 TALARKEE----AVSSLRTQHEAAVKRADHLEELLEQHR 1081
Cdd:PTZ00121 1622 AEELKKAEeekkKVEQLKKKEAEEKKKAEELKKAEEENK 1660
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
610-1082 |
1.59e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.92 E-value: 1.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 610 KALSRQLQRQREHYEATIQRHlAFIDQLIEDKKVLSEKCEAVVAELKQEDQRCTERVAQAQAqhelEIKKLKELMSATEK 689
Cdd:PRK03918 168 GEVIKEIKRRIERLEKFIKRT-ENIEELIKEKEKELEEVLREINEISSELPELREELEKLEK----EVKELEELKEEIEE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 690 ARREKWISEKTKKIKEVTVRGLEPEIQKLIARHK---QEVRRLKSLHEAEllqsderasqrclrqaeelreqlerekeal 766
Cdd:PRK03918 243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEeleEKVKELKELKEKA------------------------------ 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 767 gqqERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLgQQAARQRAELEELRQQLEesssaltralraEFEKGREE 846
Cdd:PRK03918 293 ---EEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI-KELEEKEERLEELKKKLK------------ELEKRLEE 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 847 QERRHQmELNTLKQQL-ELERQAWEAGRTRKERMSPQEAWLLNREQELREEIRKGRDKEIELviHRLEADMALAKEESEK 925
Cdd:PRK03918 357 LEERHE-LYEEAKAKKeELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGEL--KKEIKELKKAIEELKK 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 926 A-----------AESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERAledaqavnEQL 994
Cdd:PRK03918 434 AkgkcpvcgrelTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELA--------EQL 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 995 SSERSNLAQVIRQEFEdrlaASEEETRQAKAELATLQARQqleleevhRRVKTALARKEEAVSSLRTQHEAAVKRADHLE 1074
Cdd:PRK03918 506 KELEEKLKKYNLEELE----KKAEEYEKLKEKLIKLKGEI--------KSLKKELEKLEELKKKLAELEKKLDELEEELA 573
|
....*...
gi 767994131 1075 ELLEQHRR 1082
Cdd:PRK03918 574 ELLKELEE 581
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
772-1059 |
2.41e-08 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 58.21 E-value: 2.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 772 ERARQRFQQHLEQEQwaLQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSALTRAL---RAEFEKGREEQE 848
Cdd:pfam17380 286 ERQQQEKFEKMEQER--LRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMEREReleRIRQEERKRELE 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 849 RRHQMELNT-LKQQLELERQAWEAGRTRKERMSPQEAwllNREQELREEIRKGRDKEielvihrLEADMALAKEESEKAA 927
Cdd:pfam17380 364 RIRQEEIAMeISRMRELERLQMERQQKNERVRQELEA---ARKVKILEEERQRKIQQ-------QKVEMEQIRAEQEEAR 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 928 ESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSER-------SN 1000
Cdd:pfam17380 434 QREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERkqamieeER 513
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 767994131 1001 LAQVIRQEFEDRLAASEEETRQAKAElatLQARQQLELEEvHRRVKTALARKEEAVSSL 1059
Cdd:pfam17380 514 KRKLLEKEMEERQKAIYEEERRREAE---EERRKQQEMEE-RRRIQEQMRKATEERSRL 568
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
784-1036 |
2.44e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.47 E-value: 2.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 784 QEQWALQQQRQRLYSEVAEERERLgQQAARQRAELEELRQQLEESSSALTRALRAefekgREEQERRHQMELNTLKQQLE 863
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKEL-AALKKEEKALLKQLAALERRIAALARRIRA-----LEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 864 LERQAWEAgrtRKERMSPQeawllnreqeLREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELS 943
Cdd:COG4942 94 ELRAELEA---QKEELAEL----------LRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 944 ELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIR--QEFEDRLAASEEETR 1021
Cdd:COG4942 161 ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEelEALIARLEAEAAAAA 240
|
250
....*....|....*
gi 767994131 1022 QAKAELATLQARQQL 1036
Cdd:COG4942 241 ERTPAAGFAALKGKL 255
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
917-1082 |
2.66e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 2.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 917 ALAKEESEKAAESRIKRLRDkYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSS 996
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEE-LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 997 ERSNLAQVIrQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRR------VKTALARKEEAVSSLRTQHEAAVKRA 1070
Cdd:TIGR02168 296 EISRLEQQK-QILRERLANLERQLEELEAQLEELESKLDELAEELAELeekleeLKEELESLEAELEELEAELEELESRL 374
|
170
....*....|..
gi 767994131 1071 DHLEELLEQHRR 1082
Cdd:TIGR02168 375 EELEEQLETLRS 386
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
768-1081 |
2.83e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.13 E-value: 2.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 768 QQERERARQRFQQHLE--QEQWALQQQRQRLYSEVAE---ERERLGQQAARQRAELEELRQQLEE--SSSALTRALRAEF 840
Cdd:PRK02224 233 RETRDEADEVLEEHEErrEELETLEAEIEDLRETIAEterEREELAEEVRDLRERLEELEEERDDllAEAGLDDADAEAV 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 841 EKGREEQERRhqmeLNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELREEiRKGRDKEIElvihrlEADMALAK 920
Cdd:PRK02224 313 EARREELEDR----DEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREE-AAELESELE------EAREAVED 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 921 EESEKAA-ESRIKRLRDKYE---AELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSS 996
Cdd:PRK02224 382 RREEIEElEEEIEELRERFGdapVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPV 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 997 ERSNLAQVIrQEFEDRLAASEEETRQAKAELATLQAR--QQLELEEVHRRVKTaLARKEEAVSSLRTQHEAAV------- 1067
Cdd:PRK02224 462 EGSPHVETI-EEDRERVEELEAELEDLEEEVEEVEERleRAEDLVEAEDRIER-LEERREDLEELIAERRETIeekrera 539
|
330
....*....|....*...
gi 767994131 1068 ----KRADHLEELLEQHR 1081
Cdd:PRK02224 540 eelrERAAELEAEAEEKR 557
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
887-1082 |
2.97e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 2.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 887 LNREQELREEIRKGRD------------KEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQE 954
Cdd:COG1196 188 LERLEDILGELERQLEplerqaekaeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 955 RCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAvNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQ 1034
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQ-DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL 346
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 767994131 1035 QlELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1082
Cdd:COG1196 347 E-EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
576-1082 |
5.02e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 5.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 576 LKLEVEEKKQAMLLLQ-RALAQQRDLTARRVKETEKALSrQLQRQREHYEATIQRHLAFIDQL----------------- 637
Cdd:TIGR02169 216 LLKEKREYEGYELLKEkEALERQKEAIERQLASLEEELE-KLTEEISELEKRLEEIEQLLEELnkkikdlgeeeqlrvke 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 638 -IEDKKVLSEKCEAVVAELKQEDQRCTERVAQAQAQ---HELEIKKLKELMsATEKARREKWISEKTKKIKEVTVrgLEP 713
Cdd:TIGR02169 295 kIGELEAEIASLERSIAEKERELEDAEERLAKLEAEidkLLAEIEELEREI-EEERKRRDKLTEEYAELKEELED--LRA 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 714 EIQKLIARHKQEVRRLKSLHEA-ELLQSDERASQRCLRQAEELREQLEREKEALgQQERERARQR---FQQHLEQEQWAL 789
Cdd:TIGR02169 372 ELEEVDKEFAETRDELKDYREKlEKLKREINELKRELDRLQEELQRLSEELADL-NAAIAGIEAKineLEEEKEDKALEI 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 790 QQQRQRLySEVAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMEL---------NTLKQ 860
Cdd:TIGR02169 451 KKQEWKL-EQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVlkasiqgvhGTVAQ 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 861 QLELERQ-----------------------AWEAGRTRKERMSPQEAWL-LNREQELREEIRKGR--------------D 902
Cdd:TIGR02169 530 LGSVGERyataievaagnrlnnvvveddavAKEAIELLKRRKAGRATFLpLNKMRDERRDLSILSedgvigfavdlvefD 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 903 KEIE----------LVIHRLEADMALAKE-----------ESEKAAESRIKRLRDKYEAELSELEQSERkLQERCSELKG 961
Cdd:TIGR02169 610 PKYEpafkyvfgdtLVVEDIEAARRLMGKyrmvtlegelfEKSGAMTGGSRAPRGGILFSRSEPAELQR-LRERLEGLKR 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 962 QLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEdRLAASEEETRQAKAELATLQARQQlELEEV 1041
Cdd:TIGR02169 689 ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKE-RLEELEEDLSSLEQEIENVKSELK-ELEAR 766
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 767994131 1042 HRRVKTALARKEEAVSSL--RTQHEAAVKRADHLEELLEQHRR 1082
Cdd:TIGR02169 767 IEELEEDLHKLEEALNDLeaRLSHSRIPEIQAELSKLEEEVSR 809
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
604-907 |
5.14e-08 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 57.06 E-value: 5.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 604 RVKETEKALSRQLQRQREHYEATIQRHLAFIDQ--LIEDKKVLSEKCEAVVAELKQED-QRCTERVAQAQAQheLEIKKL 680
Cdd:pfam17380 300 RLRQEKEEKAREVERRRKLEEAEKARQAEMDRQaaIYAEQERMAMERERELERIRQEErKRELERIRQEEIA--MEISRM 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 681 KEL----MSATEKARREKWISEKTKKIKEvtvrgLEPEIQKLIARHKQEVRRLKSLHE---AELLQSDERASQRCLRQAE 753
Cdd:pfam17380 378 RELerlqMERQQKNERVRQELEAARKVKI-----LEEERQRKIQQQKVEMEQIRAEQEearQREVRRLEEERAREMERVR 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 754 ELREQLEREKEALGQQERERARQRFQQHLEQEQWAL-QQQRQRLYSEVAEERERLGQQAARQRAELEelrQQLEESSSAL 832
Cdd:pfam17380 453 LEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRaEEQRRKILEKELEERKQAMIEEERKRKLLE---KEMEERQKAI 529
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767994131 833 TralraefekgrEEQERRHQMELNTLKQQLELERQAWEAGRTRKERMSPQEAwlLNREQELREEIRKGRDKEIEL 907
Cdd:pfam17380 530 Y-----------EEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEA--MEREREMMRQIVESEKARAEY 591
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
579-1068 |
7.93e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 56.77 E-value: 7.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 579 EVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQ---LQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAEL 655
Cdd:pfam12128 277 RQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAAdaaVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSEL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 656 KQEDQRC---TERVAQAQAQHELEIKKLKElmsatEKARREKWISEKTKKIKEVTVRGLEPE---IQKLIA--RHKQEVR 727
Cdd:pfam12128 357 ENLEERLkalTGKHQDVTAKYNRRRSKIKE-----QNNRDIAGIKDKLAKIREARDRQLAVAeddLQALESelREQLEAG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 728 RLKSLHEAELLQSdeRASQRCLRQAEELREQLEREKEALGQQERERARQRfQQHLEQEQWALQQQRQRLYSEVAEERERL 807
Cdd:pfam12128 432 KLEFNEEEYRLKS--RLGELKLRLNQATATPELLLQLENFDERIERAREE-QEAANAEVERLQSELRQARKRRDQASEAL 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 808 GQQAAR---QRAELEELRQQLEESSSALTRALRAEfekgreeqerrhqmelntlkqqleleRQAWEAGRTRkermspqea 884
Cdd:pfam12128 509 RQASRRleeRQSALDELELQLFPQAGTLLHFLRKE--------------------------APDWEQSIGK--------- 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 885 wLLNREQELREEIRKGRDKEI---ELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELseleQSERKLQERCSElkg 961
Cdd:pfam12128 554 -VISPELLHRTDLDPEVWDGSvggELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEAL----QSAREKQAAAEE--- 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 962 QLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEV 1041
Cdd:pfam12128 626 QLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQ 705
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 767994131 1042 HRRVKTA------------------LARKEEAVSSLRTQHEAAVK 1068
Cdd:pfam12128 706 KEQKREArtekqaywqvvegaldaqLALLKAAIAARRSGAKAELK 750
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
729-928 |
1.06e-07 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 55.94 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 729 LKSLHEAELLQSDERAsQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLysevaEERErlg 808
Cdd:PRK12704 25 RKKIAEAKIKEAEEEA-KRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRL-----LQKE--- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 809 QQAARQRAELEELRQQLEESSSALTRaLRAEFEKGREEQERRHQmelntlKQQLELERQAweagrtrkeRMSPQEAwlln 888
Cdd:PRK12704 96 ENLDRKLELLEKREEELEKKEKELEQ-KQQELEKKEEELEELIE------EQLQELERIS---------GLTAEEA---- 155
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 767994131 889 rEQELREEIRKGRDKEIELVIHRLEADmalAKEESEKAAE 928
Cdd:PRK12704 156 -KEILLEKVEEEARHEAAVLIKEIEEE---AKEEADKKAK 191
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
764-1082 |
2.51e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.12 E-value: 2.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 764 EALGQQERERARQRFQQHlEQEQWALQQQRQRLYSE---VAEERERLGQQAARQRAELEELRQQLEESSSALTRALRaef 840
Cdd:pfam15921 259 ELLLQQHQDRIEQLISEH-EVEITGLTEKASSARSQansIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELR--- 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 841 ekgreEQERRHQMELNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELREEIrkgrdkeielviHRLEADMALAK 920
Cdd:pfam15921 335 -----EAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADL------------HKREKELSLEK 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 921 EESekaaesriKRLRDKYEAELSELEQSERKLQERCSE-------LKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQ 993
Cdd:pfam15921 398 EQN--------KRLWDRDTGNSITIDHLRRELDDRNMEvqrlealLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQ 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 994 LSSERSNLAQVIRQ--------EFEDR----LAASEEETRQA----KAELATLQARQQLELEEV--------HRR----- 1044
Cdd:pfam15921 470 LESTKEMLRKVVEEltakkmtlESSERtvsdLTASLQEKERAieatNAEITKLRSRVDLKLQELqhlknegdHLRnvqte 549
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 767994131 1045 ---VKTALARKEEAVSSLRTQHEaavkradHLEELLEQHRR 1082
Cdd:pfam15921 550 ceaLKLQMAEKDKVIEILRQQIE-------NMTQLVGQHGR 583
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
763-1080 |
3.32e-07 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 54.96 E-value: 3.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 763 KEALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQR--AELEELRQQLEESSSAltRALRAEF 840
Cdd:PRK04863 300 RQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERyqADLEELEERLEEQNEV--VEEADEQ 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 841 EKGREEQERRHQMELNTLKQQLELERQAWEAGRTR-------KERMSPQEAWLLNREQEL---REEIRKGRDKEIELVIH 910
Cdd:PRK04863 378 QEENEARAEAAEEEVDELKSQLADYQQALDVQQTRaiqyqqaVQALERAKQLCGLPDLTAdnaEDWLEEFQAKEQEATEE 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 911 RLEADMAL-----AKEESEKAAESrIKRLRDKYEAE---------LSELEqSERKLQERCSELKGQLGEAEGEnLRLQgl 976
Cdd:PRK04863 458 LLSLEQKLsvaqaAHSQFEQAYQL-VRKIAGEVSRSeawdvarelLRRLR-EQRHLAEQLQQLRMRLSELEQR-LRQQ-- 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 977 vRQKERALEDAQAVNEQLSSERSNLaqvirQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARK---- 1052
Cdd:PRK04863 533 -QRAERLLAEFCKRLGKNLDDEDEL-----EQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARApawl 606
|
330 340 350
....*....|....*....|....*....|
gi 767994131 1053 --EEAVSSLRTQHEAAVKRADHLEELLEQH 1080
Cdd:PRK04863 607 aaQDALARLREQSGEEFEDSQDVTEYMQQL 636
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
799-1079 |
3.44e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.66 E-value: 3.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 799 EVAEERErlgQQAARQRAELEELRQQLEESSSALTRALRAEfekgreEQERRhqmeLNTLKQQLELERQAWEAGRTRKER 878
Cdd:PRK02224 468 ETIEEDR---ERVEELEAELEDLEEEVEEVEERLERAEDLV------EAEDR----IERLEERREDLEELIAERRETIEE 534
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 879 MSPQEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAA-ESRIKRLrDKYEAELSELEQSERKLQERCS 957
Cdd:PRK02224 535 KRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAElKERIESL-ERIRTLLAAIADAEDEIERLRE 613
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 958 ELKGQlgeAEGENLRLQGLVRQKERALEDAQAVNEqlssERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLe 1037
Cdd:PRK02224 614 KREAL---AELNDERRERLAEKRERKRELEAEFDE----ARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGA- 685
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 767994131 1038 leevhrrVKTALARKEEavssLRTQHEAAVKRADHLEELLEQ 1079
Cdd:PRK02224 686 -------VENELEELEE----LRERREALENRVEALEALYDE 716
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
886-1063 |
5.41e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 5.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 886 LLNREQELREEIRKGRDK--EIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQL 963
Cdd:COG4913 253 LLEPIRELAERYAAARERlaELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQI 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 964 GEAEGENL-RLQGLVRQKERALEDAQAVNEQLSSERSNLAQVI---RQEFEDRLAASEEETRQAKAELATLQARQQlELE 1039
Cdd:COG4913 333 RGNGGDRLeQLEREIERLERELEERERRRARLEALLAALGLPLpasAEEFAALRAEAAALLEALEEELEALEEALA-EAE 411
|
170 180
....*....|....*....|....
gi 767994131 1040 EVHRRVKTALARKEEAVSSLRTQH 1063
Cdd:COG4913 412 AALRDLRRELRELEAEIASLERRK 435
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
714-1079 |
5.62e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 5.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 714 EIQKLIARHKQEVRRLKSlHEAELLQSDERASQRclrqaeelreQLEREKEALGQQERERARQRFQQHLEQEQWALQQQR 793
Cdd:TIGR02169 685 GLKRELSSLQSELRRIEN-RLDELSQELSDASRK----------IGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 794 QRLYSEVAEERERLgqqaARQRAELEELRQQLEEsssaltraLRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAgr 873
Cdd:TIGR02169 754 ENVKSELKELEARI----EELEEDLHKLEEALND--------LEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQ-- 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 874 tRKERMSPQEAWLLNREQELREEIR--KGRDKEIELVIHRLEADMALAKEESEkaaesrikrlrdKYEAELSELEQSERK 951
Cdd:TIGR02169 820 -KLNRLTLEKEYLEKEIQELQEQRIdlKEQIKSIEKEIENLNGKKEELEEELE------------ELEAALRDLESRLGD 886
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 952 LQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDrlAASEEETRQAKAELATLQ 1031
Cdd:TIGR02169 887 LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI--PEEELSLEDVQAELQRVE 964
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 767994131 1032 ARQQlELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1079
Cdd:TIGR02169 965 EEIR-ALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEE 1011
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
795-1079 |
6.27e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 6.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 795 RLYSEVAEERERLGQ---QAARQRAELEELRQQLEESSSALTRAlraefekgrEEQERRHQMELNTLKQQLELERQAWEA 871
Cdd:TIGR02169 671 SEPAELQRLRERLEGlkrELSSLQSELRRIENRLDELSQELSDA---------SRKIGEIEKEIEQLEQEEEKLKERLEE 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 872 GRTRKERMSPQEAWLLNREQELREEIRKGRDK--EIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSE 949
Cdd:TIGR02169 742 LEEDLSSLEQEIENVKSELKELEARIEELEEDlhKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKL 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 950 RKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRqEFEDRLAASEEETRQAKAELAT 1029
Cdd:TIGR02169 822 NRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR-DLESRLGDLKKERDELEAQLRE 900
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 767994131 1030 LQARQQleleevhrRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1079
Cdd:TIGR02169 901 LERKIE--------ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE 942
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
807-1081 |
7.41e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 7.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 807 LGQQAARQRAELEELRQQLEESSSALtralraefekgrEEQERRHQMELNTLKQQLELERQAWEAGRTRKERMSPQEAwL 886
Cdd:COG4913 604 LGFDNRAKLAALEAELAELEEELAEA------------EERLEALEAELDALQERREALQRLAEYSWDEIDVASAERE-I 670
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 887 LNREQELrEEIRKGRD--KEIELVIHRLEADMALAKEESEkAAESRIKRLRDKYEAELSELEQSERKLqERCSELKGQLG 964
Cdd:COG4913 671 AELEAEL-ERLDASSDdlAALEEQLEELEAELEELEEELD-ELKGEIGRLEKELEQAEEELDELQDRL-EAAEDLARLEL 747
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 965 EAEGENLRLQGLVRQKERAL-EDAQAVNEQLSSERSNLAQVIRQEFED----------RLAASEEETRQAKAELATLQAR 1033
Cdd:COG4913 748 RALLEERFAAALGDAVERELrENLEERIDALRARLNRAEEELERAMRAfnrewpaetaDLDADLESLPEYLALLDRLEED 827
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 767994131 1034 qqlELEEVHRRVKTALARKEEA-----VSSLRTQHEAAVKRADHLEELLEQHR 1081
Cdd:COG4913 828 ---GLPEYEERFKELLNENSIEfvadlLSKLRRAIREIKERIDPLNDSLKRIP 877
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
770-1037 |
9.17e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 53.30 E-value: 9.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 770 ERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQER 849
Cdd:pfam12128 269 SDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQ 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 850 ----RHQMEL--NTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELREEIRKGRDKEielvihRLEADMALAKEES 923
Cdd:pfam12128 349 lpswQSELENleERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQ------LAVAEDDLQALES 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 924 EkaaesrikrLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLvRQKERALEDAQAVNEQLSSERSNLAQ 1003
Cdd:pfam12128 423 E---------LREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQL-ENFDERIERAREEQEAANAEVERLQS 492
|
250 260 270
....*....|....*....|....*....|....
gi 767994131 1004 VIRQEFEDRLAASEeetRQAKAELATLQARQQLE 1037
Cdd:pfam12128 493 ELRQARKRRDQASE---ALRQASRRLEERQSALD 523
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
568-955 |
1.42e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 52.67 E-value: 1.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 568 EVSTSVMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEK 647
Cdd:pfam02463 633 ELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEEL 712
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 648 CEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKLIARHKQEVR 727
Cdd:pfam02463 713 KKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 728 RLKSLHEAELLQSDERASQRclrQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERErl 807
Cdd:pfam02463 793 EEKLKAQEEELRALEEELKE---EAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEE-- 867
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 808 gqqaarQRAELEELRQQLEESssaltRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKERMSPQEAWLL 887
Cdd:pfam02463 868 ------LLQELLLKEEELEEQ-----KLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEE 936
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767994131 888 NREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQER 955
Cdd:pfam02463 937 PEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEK 1004
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
603-1082 |
1.84e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.37 E-value: 1.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 603 RRVKETEKALSR--QLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAELKQEDQRcTERVAQAQAQHEL---EI 677
Cdd:PRK03918 176 RRIERLEKFIKRteNIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEEL-KEEIEELEKELESlegSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 678 KKLKELMSATEKARRE--KWISEKTKKIKEVT-VRGLEPEIQKLIARHKQEVRRLKSLH-EAELLQSDERASQRCLRQAE 753
Cdd:PRK03918 255 RKLEEKIRELEERIEElkKEIEELEEKVKELKeLKEKAEEYIKLSEFYEEYLDELREIEkRLSRLEEEINGIEERIKELE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 754 ELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYS----------------------EVAEERERLGQQA 811
Cdd:PRK03918 335 EKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKrltgltpeklekeleelekakeEIEEEISKITARI 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 812 ARQRAELEELRQQLEESSSALTRAL---RAEFEKGREEQERRHQMELNTLKQQL----ELERQAWEagRTRKERMSPQEA 884
Cdd:PRK03918 415 GELKKEIKELKKAIEELKKAKGKCPvcgRELTEEHRKELLEEYTAELKRIEKELkeieEKERKLRK--ELRELEKVLKKE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 885 WLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAA--ESRIKRLRDK------YEAELSELEQSERKLQERC 956
Cdd:PRK03918 493 SELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIklKGEIKSLKKElekleeLKKKLAELEKKLDELEEEL 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 957 SELKGQLGE------------------AEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQV-------------I 1005
Cdd:PRK03918 573 AELLKELEElgfesveeleerlkelepFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETekrleelrkeleeL 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 1006 RQEF-EDRLAASEEETRQAKAELATLQARqqleLEEVHRRVKTA------LARKEEAVSSLRTQHEAAVKRADHLEELLE 1078
Cdd:PRK03918 653 EKKYsEEEYEELREEYLELSRELAGLRAE----LEELEKRREEIkktlekLKEELEEREKAKKELEKLEKALERVEELRE 728
|
....
gi 767994131 1079 QHRR 1082
Cdd:PRK03918 729 KVKK 732
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
576-1041 |
3.77e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.12 E-value: 3.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 576 LKLEVEEKKQamLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAEL 655
Cdd:TIGR00618 158 LKAKSKEKKE--LLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREAL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 656 KQEDQrctervAQAQAQHELEikklkelmSATEKARREKWISEKTKKIKEVtvRGLEPEIQKLIARHKQEVRRLKSLHEA 735
Cdd:TIGR00618 236 QQTQQ------SHAYLTQKRE--------AQEEQLKKQQLLKQLRARIEEL--RAQEAVLEETQERINRARKAAPLAAHI 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 736 ELLQSDERASQRCLRQaeelreqlerekeaLGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQR 815
Cdd:TIGR00618 300 KAVTQIEQQAQRIHTE--------------LQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVAT 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 816 AELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELRE 895
Cdd:TIGR00618 366 SIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAA 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 896 EIRKGRDKEIELVIHRLEADMAL-AKEESEKAAES---RIKRLRDKYEAELSELEQSERKLQERCSELKG---QLGEAEG 968
Cdd:TIGR00618 446 AITCTAQCEKLEKIHLQESAQSLkEREQQLQTKEQihlQETRKKAVVLARLLELQEEPCPLCGSCIHPNParqDIDNPGP 525
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767994131 969 ENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAqvirqefedRLAASEEETRQAKAELATLQARQQLELEEV 1041
Cdd:TIGR00618 526 LTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRA---------SLKEQMQEIQQSFSILTQCDNRSKEDIPNL 589
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
652-1075 |
3.97e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.20 E-value: 3.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 652 VAELKQEDQRCT---ERVAQAQAQHELEIKKL--KELMSATEKARREKWISEKTKKIKEVTvrGLEPEIQKLIARHKQEV 726
Cdd:TIGR00606 669 ITQLTDENQSCCpvcQRVFQTEAELQEFISDLqsKLRLAPDKLKSTESELKKKEKRRDEML--GLAPGRQSIIDLKEKEI 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 727 RRLKslheaELLQSDERASQRclrqaeelreqlerEKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERER 806
Cdd:TIGR00606 747 PELR-----NKLQKVNRDIQR--------------LKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERK 807
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 807 LGQQAARQRA-----ELEELRQQLEESSSALTRALRAEFEKGREEQERRHQME-LNTLKQQLELERQAWEAGRTRKERMS 880
Cdd:TIGR00606 808 IAQQAAKLQGsdldrTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQhLKSKTNELKSEKLQIGTNLQRRQQFE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 881 PQEAWLLNREQELREEIRKGRDKEIELV-----IHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQER 955
Cdd:TIGR00606 888 EQLVELSTEVQSLIREIKDAKEQDSPLEtflekDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDG 967
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 956 CSE-LKGQLGEAEGENLRLQGLVRQKERALED----AQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATL 1030
Cdd:TIGR00606 968 KDDyLKQKETELNTVNAQLEECEKHQEKINEDmrlmRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQM 1047
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 767994131 1031 QARQQleleevhrrvKTALARKEEAVSSLRTQHEAAVKRADHLEE 1075
Cdd:TIGR00606 1048 QVLQM----------KQEHQKLEENIDLIKRNHVLALGRQKGYEK 1082
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
574-1069 |
6.19e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.56 E-value: 6.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 574 MRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFI-------DQLIEDKKVLSE 646
Cdd:pfam01576 80 LESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDIllledqnSKLSKERKLLEE 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 647 KCEAVVAELKQEDQRcTERVAQAQAQHELEIKKLKELMSATEKARREkwiSEKTKKIKEvtvrGLEPEIQKLIARHKQEV 726
Cdd:pfam01576 160 RISEFTSNLAEEEEK-AKSLSKLKNKHEAMISDLEERLKKEEKGRQE---LEKAKRKLE----GESTDLQEQIAELQAQI 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 727 RRLKslheAELLQSDERasqrcLRQAEELREQLEREKEALGQQERErarqrFQQHLEQEQWALQQQRQrlYSEVAEERER 806
Cdd:pfam01576 232 AELR----AQLAKKEEE-----LQAALARLEEETAQKNNALKKIRE-----LEAQISELQEDLESERA--ARNKAEKQRR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 807 -LGQQAARQRAELE----------ELRQQLEESSSALTRALRAE---FEKGREEQERRHQMELNTLKQQLELERQAweag 872
Cdd:pfam01576 296 dLGEELEALKTELEdtldttaaqqELRSKREQEVTELKKALEEEtrsHEAQLQEMRQKHTQALEELTEQLEQAKRN---- 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 873 rtrKERMSPQEAWLLNREQELREEIRKgrdkeielvihrleadMALAKEESE---KAAESRIKRLRDKY-EAELSELEQS 948
Cdd:pfam01576 372 ---KANLEKAKQALESENAELQAELRT----------------LQQAKQDSEhkrKKLEGQLQELQARLsESERQRAELA 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 949 ER--KLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDR------LAASEEET 1020
Cdd:pfam01576 433 EKlsKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERnslqeqLEEEEEAK 512
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 767994131 1021 RQAKAELATLQArQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKR 1069
Cdd:pfam01576 513 RNVERQLSTLQA-QLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQ 560
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
764-1043 |
6.69e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 50.34 E-value: 6.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 764 EALGQQErerARQRFQQHLEQEQWALQQQRQRLySEVAEERERLGQQAARQRAELEELRQQLEESSSAL----TRA---- 835
Cdd:COG3096 341 TALRQQE---KIERYQEDLEELTERLEEQEEVV-EEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALdvqqTRAiqyq 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 836 -----------------LRAEFEKGREEQERRHQMELNT----LKQQL----------------------ELER-QAWEA 871
Cdd:COG3096 417 qavqalekaralcglpdLTPENAEDYLAAFRAKEQQATEevleLEQKLsvadaarrqfekayelvckiagEVERsQAWQT 496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 872 GRTRKERMSPQEAwLLNREQELREEIRkgrdkEIELVIHRLEADMALAKEESEKAAESR-----IKRLRDKYEAELSELE 946
Cdd:COG3096 497 ARELLRRYRSQQA-LAQRLQQLRAQLA-----ELEQRLRQQQNAERLLEEFCQRIGQQLdaaeeLEELLAELEAQLEELE 570
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 947 QSERKLQERCSELKGQLGEAEGENLRLqglvRQKERALEDAQAVNEQLsSERSNLAQVIRQEFEDRLAASEEETRQAKAE 1026
Cdd:COG3096 571 EQAAEAVEQRSELRQQLEQLRARIKEL----AARAPAWLAAQDALERL-REQSGEALADSQEVTAAMQQLLEREREATVE 645
|
330
....*....|....*..
gi 767994131 1027 LATLQARQQLELEEVHR 1043
Cdd:COG3096 646 RDELAARKQALESQIER 662
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
604-1047 |
8.61e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.12 E-value: 8.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 604 RVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKV----LSEKCEAVVAELKQEDQRCTERVAQAQAQHELEIKK 679
Cdd:pfam15921 239 RIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVeitgLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQ 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 680 LKELMSATEKARREKwisEKTKKIKEVTVRGLEPEIQkLIARHKQEVRRLKSLHEAELLQSDERAsQRCLRQAEELREQL 759
Cdd:pfam15921 319 LSDLESTVSQLRSEL---REAKRMYEDKIEELEKQLV-LANSELTEARTERDQFSQESGNLDDQL-QKLLADLHKREKEL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 760 EREKEALGQ-QERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSaLTRALRA 838
Cdd:pfam15921 394 SLEKEQNKRlWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSS-LTAQLES 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 839 EFEKGRE--EQERRHQMELNT-------LKQQLELERQAWEAG-------RTRKERMSPQEAWLLNREQELR------EE 896
Cdd:pfam15921 473 TKEMLRKvvEELTAKKMTLESsertvsdLTASLQEKERAIEATnaeitklRSRVDLKLQELQHLKNEGDHLRnvqtecEA 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 897 IR---KGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYE-----AELSELEQSERKLQERCSELKGQLGEAEG 968
Cdd:pfam15921 553 LKlqmAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEindrrLELQEFKILKDKKDAKIRELEARVSDLEL 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 969 ENLRLQGLVRQKERALEDAQAVNEQLSSE----RSNLA------QVIRQEFEDRLAASEEETRQAKAELATLQArqqlEL 1038
Cdd:pfam15921 633 EKVKLVNAGSERLRAVKDIKQERDQLLNEvktsRNELNslsedyEVLKRNFRNKSEEMETTTNKLKMQLKSAQS----EL 708
|
....*....
gi 767994131 1039 EEVHRRVKT 1047
Cdd:pfam15921 709 EQTRNTLKS 717
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
769-960 |
8.79e-06 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 49.63 E-value: 8.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 769 QERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSALT--RALRAEFEKGREE 846
Cdd:PHA02562 194 QQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNklNTAAAKIKSKIEQ 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 847 QERRHQM-----ELNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELRE---EIRKGRDKEIELV--IHRLEADM 916
Cdd:PHA02562 274 FQKVIKMyekggVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEimdEFNEQSKKLLELKnkISTNKQSL 353
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 767994131 917 ALAKEESeKAAESRIKRLRDK---YEAELSELEQSERKLQERCSELK 960
Cdd:PHA02562 354 ITLVDKA-KKVKAAIEELQAEfvdNAEELAKLQDELDKIVKTKSELV 399
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
576-1040 |
9.33e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.97 E-value: 9.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 576 LKLEVEEKKQAMLLLQRALAQQRDLTARRvkeTEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAE- 654
Cdd:TIGR00618 403 DILQREQATIDTRTSAFRDLQGQLAHAKK---QQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKe 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 655 --LKQEDQRCTERVAQAQAQHELEiKKLKELMSATEKARREKWISEKTKKI---KEVTVRGLEPEIQKLIARHKQEVRRL 729
Cdd:TIGR00618 480 qiHLQETRKKAVVLARLLELQEEP-CPLCGSCIHPNPARQDIDNPGPLTRRmqrGEQTYAQLETSEEDVYHQLTSERKQR 558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 730 KSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQ-----QERERARQRFQQHLEQEQWALQQQRQRLYSEVAEER 804
Cdd:TIGR00618 559 ASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQdltekLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCS 638
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 805 ERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAgrTRKERMSPQEA 884
Cdd:TIGR00618 639 QELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTL--LRELETHIEEY 716
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 885 WLLNREQELREEIRK----GRDKEIELVIHRLEADMALAKEESEKAAESRIKRL--RDKYEAELSELEQSERKLQERCSE 958
Cdd:TIGR00618 717 DREFNEIENASSSLGsdlaAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVtaALQTGAELSHLAAEIQFFNRLREE 796
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 959 LKGQLGEAEGENLR-----LQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDrlaaseEETRQAKAELATLQAR 1033
Cdd:TIGR00618 797 DTHLLKTLEAEIGQeipsdEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKY------EECSKQLAQLTQEQAK 870
|
....*..
gi 767994131 1034 QQLELEE 1040
Cdd:TIGR00618 871 IIQLSDK 877
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
886-1082 |
1.24e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 886 LLNREQELREEIRKGRDKEIELV--IHRLEADMALAKEEsEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQL 963
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLkqLAALERRIAALARR-IRALEQELAALEAELAELEKEIAELRAELEAQKEELAELL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 964 GEAE--GENLRLQGLVRQKE-RALEDAQAVNEQLSSERSNLAQVIRQEFEdRLAASEEETRQAKAELATL---QARQQLE 1037
Cdd:COG4942 111 RALYrlGRQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLA-ELAALRAELEAERAELEALlaeLEEERAA 189
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 767994131 1038 LEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1082
Cdd:COG4942 190 LEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
575-1082 |
2.39e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 575 RLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQRehyeatiqrhlafidqliedkkvlsEKCEAVVAE 654
Cdd:COG4913 266 AARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAEL-------------------------ERLEARLDA 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 655 LKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKW--ISEKTKKIkEVTVRGLEPEIQKLIARHKQEVRRLKSL 732
Cdd:COG4913 321 LREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRarLEALLAAL-GLPLPASAEEFAALRAEAAALLEALEEE 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 733 HEAelLQSDERASQRCLRQAEELREQLEREKEALGQ------QERERARQRFQQHL------------------EQEQW- 787
Cdd:COG4913 400 LEA--LEEALAEAEAALRDLRRELRELEAEIASLERrksnipARLLALRDALAEALgldeaelpfvgelievrpEEERWr 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 788 -----ALQQQRQRL------YSEVAE--ERERLGQ------------QAARQRAELEELRQQLEESSSALTRALRAEFEK 842
Cdd:COG4913 478 gaierVLGGFALTLlvppehYAAALRwvNRLHLRGrlvyervrtglpDPERPRLDPDSLAGKLDFKPHPFRAWLEAELGR 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 843 GR-------EEQERRHQMELnTLKQQLELERQAWEAGRTRKERmspqEAWLL---NREQ--ELREEIRkgrdkEIELVIH 910
Cdd:COG4913 558 RFdyvcvdsPEELRRHPRAI-TRAGQVKGNGTRHEKDDRRRIR----SRYVLgfdNRAKlaALEAELA-----ELEEELA 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 911 RLEADMALAKEESEkaaesRIKRLRDKYE--AELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQ 988
Cdd:COG4913 628 EAEERLEALEAELD-----ALQERREALQrlAEYSWDEIDVASAEREIAELEAELERLDASSDDLAALEEQLEELEAELE 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 989 AVNEQLssersNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLE----LEEVHRRVKTALARKeEAVSSLRTQHE 1064
Cdd:COG4913 703 ELEEEL-----DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLElralLEERFAAALGDAVER-ELRENLEERID 776
|
570
....*....|....*...
gi 767994131 1065 AAVKRADHLEELLEQHRR 1082
Cdd:COG4913 777 ALRARLNRAEEELERAMR 794
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
572-863 |
2.63e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 2.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 572 SVMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSE---KC 648
Cdd:TIGR02168 729 SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREaldEL 808
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 649 EAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREkwISEKTKKIKEVTVRGLEPEIQ---KLIARHKQE 725
Cdd:TIGR02168 809 RAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED--IESLAAEIEELEELIEELESEleaLLNERASLE 886
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 726 VRRLKSLHEAELLQSDERASQRCLRQAeelreqlerekealgQQERERARQRFQQHLEQEQwALQQQRQRLYSEVAEERE 805
Cdd:TIGR02168 887 EALALLRSELEELSEELRELESKRSEL---------------RRELEELREKLAQLELRLE-GLEVRIDNLQERLSEEYS 950
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767994131 806 RLGQQAARQRAELEELRQQLEESSSALTRALRA----------EFEkgrEEQERR----HQME-LNTLKQQLE 863
Cdd:TIGR02168 951 LTLEEAEALENKIEDDEEEARRRLKRLENKIKElgpvnlaaieEYE---ELKERYdfltAQKEdLTEAKETLE 1020
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
578-959 |
5.59e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 5.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 578 LEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALS------RQLQRQREhyeaTIQRHLAFIDQLIEDKKVLSEKCEAV 651
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSdasrkiGEIEKEIE----QLEQEEEKLKERLEELEEDLSSLEQE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 652 VAELKQEDQRCTERVaqaqAQHELEIKKLKELMSATEKARREKWISEKTKKIKEvtvrgLEPEIQKLIARHKQEVRRLKS 731
Cdd:TIGR02169 753 IENVKSELKELEARI----EELEEDLHKLEEALNDLEARLSHSRIPEIQAELSK-----LEEEVSRIEARLREIEQKLNR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 732 LHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERErarqRFQQHLEQEQWALQQQRQRLySEVAEERERLgqqa 811
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE----ELEEELEELEAALRDLESRL-GDLKKERDEL---- 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 812 arqRAELEELRQQLEESSSALtralraefekgreEQERRHQMELNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQ 891
Cdd:TIGR02169 895 ---EAQLRELERKIEELEAQI-------------EKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQA 958
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767994131 892 ELReeirkgrdkEIELVIHRLEADMALAKEESEKAAESrikrlRDKYEAELSELEQSERKLQERCSEL 959
Cdd:TIGR02169 959 ELQ---------RVEEEIRALEPVNMLAIQEYEEVLKR-----LDELKEKRAKLEEERKAILERIEEY 1012
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
794-965 |
6.76e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 6.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 794 QRLYSEVAEERERLGqqaaRQRAELEELRQQLEESSSALTrALRAEFEKGREEQeRRHQMELNTLKQQLELERQAWEAGR 873
Cdd:COG1579 13 QELDSELDRLEHRLK----ELPAELAELEDELAALEARLE-AAKTELEDLEKEI-KRLELEIEEVEARIKKYEEQLGNVR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 874 TRKERMSpqeawLLNREQELREEIRKGRDKEIELV--IHRLEADMALAKEEsEKAAESRIKRLRDKYEAELSELEQSERK 951
Cdd:COG1579 87 NNKEYEA-----LQKEIESLKRRISDLEDEILELMerIEELEEELAELEAE-LAELEAELEEKKAELDEELAELEAELEE 160
|
170
....*....|....
gi 767994131 952 LQERCSELKGQLGE 965
Cdd:COG1579 161 LEAEREELAAKIPP 174
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
725-1038 |
1.22e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 46.22 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 725 EVRRLKSLHE-AELLQSDERAS--QRCLRQAEELREQLEREKEALgqqereRARQRFQQHL-------EQEQWALQQQRQ 794
Cdd:COG5022 737 EDMRDAKLDNiATRIQRAIRGRylRRRYLQALKRIKKIQVIQHGF------RLRRLVDYELkwrlfikLQPLLSLLGSRK 810
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 795 RLYSEVAE--------ERERLGQQAARQRAEL--EELRQQLEESSSALTRALR------AEFEKGREEQERRHQMEL--- 855
Cdd:COG5022 811 EYRSYLACiiklqktiKREKKLRETEEVEFSLkaEVLIQKFGRSLKAKKRFSLlkketiYLQSAQRVELAERQLQELkid 890
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 856 ----NTLKQQ-LELERQAWEAGRTRKERMSPQEAWLLNREQELrEEIRKGRDKEIELVIHRLEADmalaKEESEKAAESR 930
Cdd:COG5022 891 vksiSSLKLVnLELESEIIELKKSLSSDLIENLEFKTELIARL-KKLLNNIDLEEGPSIEYVKLP----ELNKLHEVESK 965
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 931 IKRLRDKYEAELSELEQSERKLQERCSELKG---QLGEAEGENLRLQ---GLVRQKERALEDAQAVNEQLSSERSNLAQv 1004
Cdd:COG5022 966 LKETSEEYEDLLKKSTILVREGNKANSELKNfkkELAELSKQYGALQestKQLKELPVEVAELQSASKIISSESTELSI- 1044
|
330 340 350
....*....|....*....|....*....|....
gi 767994131 1005 iRQEFEDRLAASEEETRQAKAELATLQARQQLEL 1038
Cdd:COG5022 1045 -LKPLQKLKGLLLLENNQLQARYKALKLRRENSL 1077
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
666-896 |
1.66e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 666 VAQAQAQHELEiKKLKELMSatEKARREKWISEKTKKIKEvtvrgLEPEIQKLIARHKQEVRRLKSLheaellQSDERAS 745
Cdd:COG4942 16 AAQADAAAEAE-AELEQLQQ--EIAELEKELAALKKEEKA-----LLKQLAALERRIAALARRIRAL------EQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 746 QRCLRQAEELREQLEREKEALGQQ--ERERARQRFQQH------LEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAE 817
Cdd:COG4942 82 EAELAELEKEIAELRAELEAQKEElaELLRALYRLGRQpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 818 LEELRQQLEESSSALTRALRAEFEKGR--EEQERRHQMELNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELRE 895
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAalEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
.
gi 767994131 896 E 896
Cdd:COG4942 242 R 242
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
912-1082 |
2.15e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 2.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 912 LEADMALAKEESEkAAESRIKRLRDKYEaeLSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAV- 990
Cdd:COG3206 180 LEEQLPELRKELE-EAEAALEEFRQKNG--LVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDAl 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 991 -----NEQLSSERSNLAQVIRQ--EFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQH 1063
Cdd:COG3206 257 pellqSPVIQQLRAQLAELEAElaELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQL 336
|
170
....*....|....*....
gi 767994131 1064 EAAVKRADHLEELLEQHRR 1082
Cdd:COG3206 337 AQLEARLAELPELEAELRR 355
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
593-1035 |
2.33e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.33 E-value: 2.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 593 ALAQQRDLTARRVKETeKALSRQLQRQREHYEATIQRHLAFidqliedkkVLSEKCEAVVAELKQEDQRCTERVAQAQA- 671
Cdd:COG3096 789 ELRAERDELAEQYAKA-SFDVQKLQRLHQAFSQFVGGHLAV---------AFAPDPEAELAALRQRRSELERELAQHRAq 858
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 672 --QHELEIKKLKELMSAtekarrekwisektkkikevtVRGLEPEIQKLIARHKQEvrRLKSLHE-AELLQSDERASQRC 748
Cdd:COG3096 859 eqQLRQQLDQLKEQLQL---------------------LNKLLPQANLLADETLAD--RLEELREeLDAAQEAQAFIQQH 915
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 749 LRQAEELREQLEREKEALGQQERerarqrFQQHLEQEQWALQQQRQRLY--SEVAEERERLGQQAArqraeleelrQQLE 826
Cdd:COG3096 916 GKALAQLEPLVAVLQSDPEQFEQ------LQADYLQAKEQQRRLKQQIFalSEVVQRRPHFSYEDA----------VGLL 979
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 827 ESSSALTRALRAEFEKGrEEQERRHQMELNTLKQQLELERQAWEAGRTRKErmspqeawllNREQELREEIRkgrdkeie 906
Cdd:COG3096 980 GENSDLNEKLRARLEQA-EEARREAREQLRQAQAQYSQYNQVLASLKSSRD----------AKQQTLQELEQ-------- 1040
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 907 lvihRLEADMALAKEESEKAAESRikrlRDKYEAELSELEQserklqeRCSELKGQLGEAEGENLRLQGLVRQKERaleD 986
Cdd:COG3096 1041 ----ELEELGVQADAEAEERARIR----RDELHEELSQNRS-------RRSQLEKQLTRCEAEMDSLQKRLRKAER---D 1102
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 767994131 987 AQAVNEQLSSERSNLAQVIRqefedRLAASEEETRQAKAELATLQARQQ 1035
Cdd:COG3096 1103 YKQEREQVVQAKAGWCAVLR-----LARDNDVERRLHRRELAYLSADEL 1146
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
903-1005 |
2.39e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 45.46 E-value: 2.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 903 KEIELVIHRLEADMALAKEESEKAAESRIKRLRDKY---EAELSELE---QSERKLQERCSELKGQLGEAEGENLRLQGL 976
Cdd:COG0542 414 DELERRLEQLEIEKEALKKEQDEASFERLAELRDELaelEEELEALKarwEAEKELIEEIQELKEELEQRYGKIPELEKE 493
|
90 100 110
....*....|....*....|....*....|
gi 767994131 977 VRQKERALEDAQA-VNEQLSSErsNLAQVI 1005
Cdd:COG0542 494 LAELEEELAELAPlLREEVTEE--DIAEVV 521
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
792-982 |
2.97e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.11 E-value: 2.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 792 QRQRLYSEVAEERERLGQQAARQRAELEELRQQLEesssaltrALRAEFEKGREEQErrhqMELNTLKQQLELERQAWEA 871
Cdd:pfam15921 643 ERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYE--------VLKRNFRNKSEEME----TTTNKLKMQLKSAQSELEQ 710
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 872 GRTRKERMSPQEAWLLNREQELREEI--RKGRDKEIELVIHRLEADMALA-------KEESEKAAE--SRIKRLRDKYEA 940
Cdd:pfam15921 711 TRNTLKSMEGSDGHAMKVAMGMQKQItaKRGQIDALQSKIQFLEEAMTNAnkekhflKEEKNKLSQelSTVATEKNKMAG 790
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 767994131 941 ELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKER 982
Cdd:pfam15921 791 ELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQ 832
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
770-922 |
3.20e-04 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 44.56 E-value: 3.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 770 ERERARQRFQQHLEQEQwalQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQE- 848
Cdd:pfam15709 351 ERKRREQEEQRRLQQEQ---LERAEKMREELELEQQRRFEEIRLRKQRLEEERQRQEEEERKQRLQLQAAQERARQQQEe 427
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767994131 849 -RRHQMELNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEE 922
Cdd:pfam15709 428 fRRKLQELQRKKQQEEAERAEAEKQRQKELEMQLAEEQKRLMEMAEEERLEYQRQKQEAEEKARLEAEERRQKEE 502
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
818-1081 |
3.54e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.50 E-value: 3.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 818 LEELRQQLEESSSALTRALRAEFEKGREEQERRHQMEL----NTLKQQLELERQAWEAGRTRKERmspQEAWLLNREQEL 893
Cdd:pfam07888 9 LEEESHGEEGGTDMLLVVPRAELLQNRLEECLQERAELlqaqEAANRQREKEKERYKRDREQWER---QRRELESRVAEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 894 REEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIkrlRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRL 973
Cdd:pfam07888 86 KEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQ---RAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 974 QGLVRQKERALEDAQAVNEQLSSERSNLAQVIrQEFEDRLAASEEETRQAKAELATLQA------RQQLELEEVHRRVKT 1047
Cdd:pfam07888 163 GAQRKEEEAERKQLQAKLQQTEEELRSLSKEF-QELRNSLAQRDTQVLQLQDTITTLTQklttahRKEAENEALLEELRS 241
|
250 260 270
....*....|....*....|....*....|....*..
gi 767994131 1048 A---LARKEEAVSSLRTQHEAAVKRADHLEELLEQHR 1081
Cdd:pfam07888 242 LqerLNASERKVEGLGEELSSMAAQRDRTQAELHQAR 278
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
795-1084 |
3.74e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 3.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 795 RLYSEVAEERER-LGQQAARQRAELEELRQQLE--ESSSALTRALRAEFEKGREEQERRHQmELNTLKQQLELERQAWEA 871
Cdd:PRK02224 191 QLKAQIEEKEEKdLHERLNGLESELAELDEEIEryEEQREQARETRDEADEVLEEHEERRE-ELETLEAEIEDLRETIAE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 872 GRTRKErmspqeawllnreqELREEIRKGRDKEIELvihRLEADMALAKEESEKAAESRIkrlrdkyEAELSELEQSERK 951
Cdd:PRK02224 270 TERERE--------------ELAEEVRDLRERLEEL---EEERDDLLAEAGLDDADAEAV-------EARREELEDRDEE 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 952 LQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRqEFEDRLAASEEETRQAKAELATLQ 1031
Cdd:PRK02224 326 LRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVE-DRREEIEELEEEIEELRERFGDAP 404
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 767994131 1032 ARQQlELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRRPT 1084
Cdd:PRK02224 405 VDLG-NAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPE 456
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
591-955 |
4.31e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.56 E-value: 4.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 591 QRALAQQRDLTARR----VKETEKALSRQLQRQREHYEA--TIQRHLAFIDQLIEDKKVLSEKCEA---VVAELKQEDQR 661
Cdd:PRK04863 301 QLAAEQYRLVEMARelaeLNEAESDLEQDYQAASDHLNLvqTALRQQEKIERYQADLEELEERLEEqneVVEEADEQQEE 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 662 CTERVAQAQA------------QHELEIKKLKEL-----MSATEKARR------------EKWISEKTKKIKEVTVRGLE 712
Cdd:PRK04863 381 NEARAEAAEEevdelksqladyQQALDVQQTRAIqyqqaVQALERAKQlcglpdltadnaEDWLEEFQAKEQEATEELLS 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 713 PEiQKLiarhkqevrrlkSLHEAELLQSDERASQRClrqaeelreqlerekEALGQQERERARQRFQQHLEQ--EQWALQ 790
Cdd:PRK04863 461 LE-QKL------------SVAQAAHSQFEQAYQLVR---------------KIAGEVSRSEAWDVARELLRRlrEQRHLA 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 791 QQRQRLYSEVAEERERLGQQAARQR----------------AELEELRQQLEESSSALTRALRAEFEkgREEQERRHQME 854
Cdd:PRK04863 513 EQLQQLRMRLSELEQRLRQQQRAERllaefckrlgknlddeDELEQLQEELEARLESLSESVSEARE--RRMALRQQLEQ 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 855 LNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELREEIRKGRDKEIELVIHRleadmalakeesekaaesrikrl 934
Cdd:PRK04863 591 LQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVER----------------------- 647
|
410 420
....*....|....*....|.
gi 767994131 935 rDKYEAELSELEQSERKLQER 955
Cdd:PRK04863 648 -DELAARKQALDEEIERLSQP 667
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
768-937 |
4.32e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.46 E-value: 4.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 768 QQERERARQRFQQHLEQEQWALQQQRQRLYSEVaeerERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQ 847
Cdd:COG2433 390 LPEEEPEAEREKEHEERELTEEEEEIRRLEEQV----ERLEAEVEELEAELEEKDERIERLERELSEARSEERREIRKDR 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 848 E-RRHQMELNTLKQQLELERQAWEAGRTRKERMspQEAWLLNREQELR--EEIRKGRDKEIElvihRLEADMALAK---- 920
Cdd:COG2433 466 EiSRLDREIERLERELEEERERIEELKRKLERL--KELWKLEHSGELVpvKVVEKFTKEAIR----RLEEEYGLKEgdvv 539
|
170
....*....|....*....
gi 767994131 921 --EESEKAAESRIKRLRDK 937
Cdd:COG2433 540 ylRDASGAGRSTAELLAEA 558
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
795-1043 |
4.42e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.12 E-value: 4.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 795 RLYSEVAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREeqerrhqmelntLKQQLELERQAWEAGRT 874
Cdd:pfam07888 48 QAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEE------------LEEKYKELSASSEELSE 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 875 RKERMSPQEAWLLNREQELREEIR----KGRDKEIELVIHRLEADMALAKEESEKAAesrikrlRDKYEAELSELEQSER 950
Cdd:pfam07888 116 EKDALLAQRAAHEARIRELEEDIKtltqRVLERETELERMKERAKKAGAQRKEEEAE-------RKQLQAKLQQTEEELR 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 951 KLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQ---AVNEQLSSERSNLaqvirqefEDRLAASEEETRQAKAEL 1027
Cdd:pfam07888 189 SLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHrkeAENEALLEELRSL--------QERLNASERKVEGLGEEL 260
|
250
....*....|....*.
gi 767994131 1028 ATLQARQQLELEEVHR 1043
Cdd:pfam07888 261 SSMAAQRDRTQAELHQ 276
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
819-1055 |
4.57e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.58 E-value: 4.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 819 EELRQQLEESS--SALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKERMspqeawLLNREQELREE 896
Cdd:pfam02463 152 PERRLEIEEEAagSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQ------LKEKLELEEEY 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 897 IRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGL 976
Cdd:pfam02463 226 LLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKL 305
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767994131 977 VRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEA 1055
Cdd:pfam02463 306 ERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESE 384
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
573-1079 |
4.58e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.65 E-value: 4.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 573 VMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQR-QREHYEATIQRHLAFIDQLIEDKKVLSEKCEAV 651
Cdd:TIGR00606 441 TIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERElSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKL 520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 652 VAELKQEDQRCTER-----VAQAQAQHELEIKKLK-----ELMSAT----EKARREKWISEKTKKIK--EVTVRGLEPEI 715
Cdd:TIGR00606 521 DQEMEQLNHHTTTRtqmemLTKDKMDKDEQIRKIKsrhsdELTSLLgyfpNKKQLEDWLHSKSKEINqtRDRLAKLNKEL 600
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 716 QKLIARHKQEVRRLKSLHEAELLQSDErasqrclrqaeelreqlerEKEALGQQERERARQRFQQHLEQ--EQWALQQQR 793
Cdd:TIGR00606 601 ASLEQNKNHINNELESKEEQLSSYEDK-------------------LFDVCGSQDEESDLERLKEEIEKssKQRAMLAGA 661
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 794 QRLYSEVAEERER-------LGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELER 866
Cdd:TIGR00606 662 TAVYSQFITQLTDenqsccpVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDL 741
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 867 QAWEAGRTRKERMSpqeawlLNRE-QELREEIRKgRDKEIELVIHRLEA------DMALAKEESEKAAESRIKRLRDKYE 939
Cdd:TIGR00606 742 KEKEIPELRNKLQK------VNRDiQRLKNDIEE-QETLLGTIMPEEESakvcltDVTIMERFQMELKDVERKIAQQAAK 814
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 940 AELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVI--RQEFEDRLAASE 1017
Cdd:TIGR00606 815 LQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLqrRQQFEEQLVELS 894
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767994131 1018 EETRQAKAELAtlQARQQLELEEVHRrvKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1079
Cdd:TIGR00606 895 TEVQSLIREIK--DAKEQDSPLETFL--EKDQQEKEELISSKETSNKKAQDKVNDIKEKVKN 952
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
789-983 |
5.10e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 5.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 789 LQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEE--SSSALTRAlrAEFEKGREEQERRHQMELNTLKQQLELER 866
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEfrQKNGLVDL--SEEAKLLLQQLSELESQLAEARAELAEAE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 867 QAWEAGRTRKERMSPQEAWLLN--REQELREEIRKGRDKEIELVIHRLEA--DMALAKEE---SEKAAESRIKRLRDKYE 939
Cdd:COG3206 240 ARLAALRAQLGSGPDALPELLQspVIQQLRAQLAELEAELAELSARYTPNhpDVIALRAQiaaLRAQLQQEAQRILASLE 319
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 767994131 940 AELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERA 983
Cdd:COG3206 320 AELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVA 363
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
780-1022 |
5.62e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 44.44 E-value: 5.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 780 QHLEQEQWAlqqQRQRLYSEVAEE-RERLGQQAARQRAELEELRQQLEESS-SALTRALRAEFEKGREEQeRRHQMELNT 857
Cdd:NF012221 1549 KHAKQDDAA---QNALADKERAEAdRQRLEQEKQQQLAAISGSQSQLESTDqNALETNGQAQRDAILEES-RAVTKELTT 1624
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 858 LKQQLE-LERQAWEAGRTRKERMSPQEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKaaesrikrlrd 936
Cdd:NF012221 1625 LAQGLDaLDSQATYAGESGDQWRNPFAGGLLDRVQEQLDDAKKISGKQLADAKQRHVDNQQKVKDAVAK----------- 1693
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 937 kyeaelSE--LEQSERKLQErcSELKGQLGEAEGENLRLQGLVRQKE---------RALEDAQAVNEQLSSERSNLAQVI 1005
Cdd:NF012221 1694 ------SEagVAQGEQNQAN--AEQDIDDAKADAEKRKDDALAKQNEaqqaesdanAAANDAQSRGEQDASAAENKANQA 1765
|
250
....*....|....*...
gi 767994131 1006 RQEFED-RLAASEEETRQ 1022
Cdd:NF012221 1766 QADAKGaKQDESDKPNRQ 1783
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
809-1064 |
5.81e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.01 E-value: 5.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 809 QQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRhqMELNTLKQQLELERQAWEAgrtrkeRMSPQEawllN 888
Cdd:pfam01576 22 QKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMR--ARLAARKQELEEILHELES------RLEEEE----E 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 889 REQELREEIRKGRDKEIELVIHRLEADMALAKEESEK-AAESRIKRLRDK---YEAELSELEQSERKLQERCSELKGQLG 964
Cdd:pfam01576 90 RSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKvTTEAKIKKLEEDillLEDQNSKLSKERKLLEERISEFTSNLA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 965 EAEGENLRLQGLVRQKERALEDAQavneqlssERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARqqleLEEvhrr 1044
Cdd:pfam01576 170 EEEEKAKSLSKLKNKHEAMISDLE--------ERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQ----IAE---- 233
|
250 260
....*....|....*....|
gi 767994131 1045 VKTALARKEEAVSSLRTQHE 1064
Cdd:pfam01576 234 LRAQLAKKEEELQAALARLE 253
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
788-902 |
9.17e-04 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 43.21 E-value: 9.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 788 ALQQQRQRLYSEVAEERERLGQQAARQRAEL----EELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTlkqqlE 863
Cdd:pfam09731 295 EIDQLSKKLAELKKREEKHIERALEKQKEELdklaEELSARLEEVRAADEAQLRLEFEREREEIRESYEEKLRT-----E 369
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 767994131 864 LERQAWEAGRTRKERMSPQEAwLLNRE--QELREEIRKGRD 902
Cdd:pfam09731 370 LERQAEAHEEHLKDVLVEQEI-ELQREflQDIKEKVEEERA 409
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
567-840 |
1.77e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 567 SEVSTSVMRLKLEVEEKKQAMLLLQRA---LAQQRDLTARRVKETEKALSRQLQrQREHYEATIQRHLAFIDQLIEDKKV 643
Cdd:TIGR02168 729 SALRKDLARLEAEVEQLEERIAQLSKElteLEAEIEELEERLEEAEEELAEAEA-EIEELEAQIEQLKEELKALREALDE 807
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 644 LsekcEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREkwISEKTKKIKEVTVRGLEPEIQ---KLIA 720
Cdd:TIGR02168 808 L----RAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED--IESLAAEIEELEELIEELESEleaLLNE 881
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 721 RHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALgQQERERARQRFQQHLEQ--EQWAL--------- 789
Cdd:TIGR02168 882 RASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL-ELRLEGLEVRIDNLQERlsEEYSLtleeaeale 960
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767994131 790 -------QQQRQRL--------------------YSEVAEERERLgqqaARQRAELEELRQQLEESSSALTRALRAEF 840
Cdd:TIGR02168 961 nkieddeEEARRRLkrlenkikelgpvnlaaieeYEELKERYDFL----TAQKEDLTEAKETLEEAIEEIDREARERF 1034
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
893-1052 |
2.08e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.49 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 893 LREEIrKGRDKEIELVIHRLeADMA--LAKEESEKAA-ESRIKRLRdkyeAELSELEqSERklqercSELKGQLGEAEGE 969
Cdd:PRK09039 44 LSREI-SGKDSALDRLNSQI-AELAdlLSLERQGNQDlQDSVANLR----ASLSAAE-AER------SRLQALLAELAGA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 970 NLRLQGLVRQKERALEDAQAV-----------NEQLSSERSNLAQVirqefEDRLAASEEETRQAKAELATLQarqqlel 1038
Cdd:PRK09039 111 GAAAEGRAGELAQELDSEKQVsaralaqvellNQQIAALRRQLAAL-----EAALDASEKRDRESQAKIADLG------- 178
|
170
....*....|....
gi 767994131 1039 eevhRRVKTALARK 1052
Cdd:PRK09039 179 ----RRLNVALAQR 188
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
801-1088 |
2.25e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 2.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 801 AEERERLGQQAARQRAELEELRQQLEESSSALTralrAEFEKGREEQERRhqmelnTLKQQLELERQAWEAGRTRKERMS 880
Cdd:PTZ00121 1060 AEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEA----TEEAFGKAEEAKK------TETGKAEEARKAEEAKKKAEDARK 1129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 881 PQEAwllNREQELR--EEIRKGRDKEIELVIHRLE----ADMALAKEESEKAAESRiKRLRDKYEAELSELEQSERKLQE 954
Cdd:PTZ00121 1130 AEEA---RKAEDARkaEEARKAEDAKRVEIARKAEdarkAEEARKAEDAKKAEAAR-KAEEVRKAEELRKAEDARKAEAA 1205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 955 RCSELKGQLGEA-EGENLRLQGLVRQKERALEDAQavnEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAElatlQAR 1033
Cdd:PTZ00121 1206 RKAEEERKAEEArKAEDAKKAEAVKKAEEAKKDAE---EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAE----EAR 1278
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 767994131 1034 QQLELEEVHRRVKTALARKEEAVsslrtqheaavKRADHLEELLEQHRRPTPSTK 1088
Cdd:PTZ00121 1279 KADELKKAEEKKKADEAKKAEEK-----------KKADEAKKKAEEAKKADEAKK 1322
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
635-1001 |
2.27e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 635 DQLIEDKKVLSEKCEAVVAELKQEDQRCTERVAqAQAQHELEIKKLKELMSATEKARRE--KWISEKTKKIKEVtVRGLE 712
Cdd:pfam01576 738 EQGEEKRRQLVKQVRELEAELEDERKQRAQAVA-AKKKLELDLKELEAQIDAANKGREEavKQLKKLQAQMKDL-QRELE 815
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 713 PEIQ---KLIARHKQEVRRLKSLhEAELLQSDER--ASQRCLRQAeelreqlerekealgQQERERARQRFQQHLEQEqw 787
Cdd:pfam01576 816 EARAsrdEILAQSKESEKKLKNL-EAELLQLQEDlaASERARRQA---------------QQERDELADEIASGASGK-- 877
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 788 alqqqrqrlySEVAEERERLGQQAARQRAELEELRQQLEESSsaltralraefekgreEQERRHQMELNTLKQQLELERQ 867
Cdd:pfam01576 878 ----------SALQDEKRRLEARIAQLEEELEEEQSNTELLN----------------DRLRKSTLQVEQLTTELAAERS 931
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 868 AWEAGRTRKERMSPQEAWLLNREQELREEIRKgrdkEIELVIHRLEADMA-----LAKEESEKAAESRIKRLRDKYEAEL 942
Cdd:pfam01576 932 TSQKSESARQQLERQNKELKAKLQEMEGTVKS----KFKSSIAALEAKIAqleeqLEQESRERQAANKLVRRTEKKLKEV 1007
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 943 SELEQSER-----------KLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNL 1001
Cdd:pfam01576 1008 LLQVEDERrhadqykdqaeKGNSRMKQLKRQLEEAEEEASRANAARRKLQRELDDATESNESMNREVSTL 1077
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
930-1079 |
2.56e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 2.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 930 RIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQavnEQLSSERSNlaqvirqef 1009
Cdd:COG1579 21 RLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYE---EQLGNVRNN--------- 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 1010 edrlaaseEETRQAKAELATLQARQQlELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1079
Cdd:COG1579 89 --------KEYEALQKEIESLKRRIS-DLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE 149
|
|
| CHASE3 |
COG5278 |
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms]; |
714-1079 |
2.73e-03 |
|
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];
Pssm-ID: 444089 [Multi-domain] Cd Length: 530 Bit Score: 41.82 E-value: 2.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 714 EIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQR 793
Cdd:COG5278 94 ELRSLTADNPEQQARLDELEALIDQWLAELEQVIALRRAGGLEAALALVRSGEGKALMDEIRARLLLLALALAALLLAAA 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 794 QRLY-------SEVAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELER 866
Cdd:COG5278 174 ALLLlllalaaLLALAELLLLALARALAALLLLLLLEAELAAAAALLAAAAALAALAALELLAALALALALLLAALLLAL 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 867 QAWEAGRTRKERMSPQEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELE 946
Cdd:COG5278 254 LAALALAALLAAALLALAALLLALAAAAALAAAAALELAAAEALALAELELELLLAAAAAAAAAAAAAAAALAALLALAL 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 947 QSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAE 1026
Cdd:COG5278 334 ATALAAAAAALALLAALLAEAAAAAAEEAEAAAEAAAAALAGLAEVEAEGAAEAVELEVLAIAAAAAAAAAEAAAAAAAA 413
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 767994131 1027 LATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1079
Cdd:COG5278 414 AAASAAEALELAEALAEALALAEEEALALAAASSELAEAGAALALAAAEALAE 466
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
903-1071 |
3.32e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 3.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 903 KEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAEL----SELEQSERKLQERCSELKGQLGEAEGENLRLQglvr 978
Cdd:PRK12704 38 EEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELrerrNELQKLEKRLLQKEENLDRKLELLEKREEELE---- 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 979 QKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEEtrqakaelatlqARQQLeLEEVHRRVktalarKEEAVSS 1058
Cdd:PRK12704 114 KKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEE------------AKEIL-LEKVEEEA------RHEAAVL 174
|
170
....*....|...
gi 767994131 1059 LRTQHEAAVKRAD 1071
Cdd:PRK12704 175 IKEIEEEAKEEAD 187
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
799-907 |
4.18e-03 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 40.64 E-value: 4.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 799 EVAEERERlGQQAARQRAELEELRQQLEESssaltralraefekgREEQERRHQMELNTLKQQLELERQaweagRTRKEr 878
Cdd:cd16269 199 EIEAERAK-AEAAEQERKLLEEQQRELEQK---------------LEDQERSYEEHLRQLKEKMEEERE-----NLLKE- 256
|
90 100
....*....|....*....|....*....
gi 767994131 879 mspQEAWLLNREQELREEIRKGRDKEIEL 907
Cdd:cd16269 257 ---QERALESKLKEQEALLEEGFKEQAEL 282
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
768-947 |
4.19e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 4.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 768 QQERERARQRFQQHLEQeQWALQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEesssaltralraefekgreeq 847
Cdd:PRK04863 532 QQRAERLLAEFCKRLGK-NLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLE--------------------- 589
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 848 errhqmELNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELREEIRKGRDKEIELVIHRLEAdmalakEESEKAA 927
Cdd:PRK04863 590 ------QLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDEL------AARKQAL 657
|
170 180
....*....|....*....|
gi 767994131 928 ESRIKRLRDKYEAELSELEQ 947
Cdd:PRK04863 658 DEEIERLSQPGGSEDPRLNA 677
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
593-1083 |
5.26e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.10 E-value: 5.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 593 ALAQQRDLTARRVkETEKALSRQLQRQREHYEATIQRHLAFidqliedkkVLSEKCEAVVAELKQEDQRCTERVAQAQA- 671
Cdd:PRK04863 790 QLRAEREELAERY-ATLSFDVQKLQRLHQAFSRFIGSHLAV---------AFEADPEAELRQLNRRRVELERALADHESq 859
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 672 --QHELEIKKLKELMSATEKARREKWISEKTKKIKEVtvRGLEPEIQKL------IARHKQEVRRLKSLheAELLQSDer 743
Cdd:PRK04863 860 eqQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRV--EEIREQLDEAeeakrfVQQHGNALAQLEPI--VSVLQSD-- 933
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 744 asqrclrqaeelreqlerekealgQQERERARQRFQQhlEQEQWALQQQRQRLYSEVAEERERLGQQAARQR----AEL- 818
Cdd:PRK04863 934 ------------------------PEQFEQLKQDYQQ--AQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMlaknSDLn 987
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 819 EELRQQLEESSSALTRAlraefekgrEEQERRHQMELNTLKQQLelerQAWEAGRTRKERMSpqeawllnreQELREEIr 898
Cdd:PRK04863 988 EKLRQRLEQAEQERTRA---------REQLRQAQAQLAQYNQVL----ASLKSSYDAKRQML----------QELKQEL- 1043
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 899 kgrdkeielvihrleADMAL-AKEESEKAAESRikrlRDKYEAELSEleqserkLQERCSELKGQLGEAEGEnlrLQGLV 977
Cdd:PRK04863 1044 ---------------QDLGVpADSGAEERARAR----RDELHARLSA-------NRSRRNQLEKQLTFCEAE---MDNLT 1094
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 978 RQKERALEDAQAVNEQLSSERSNLAQVIRqefedRLAASEEETRQAKAELATLQARQqleleevhrrvktALARKEEAVS 1057
Cdd:PRK04863 1095 KKLRKLERDYHEMREQVVNAKAGWCAVLR-----LVKDNGVERRLHRRELAYLSADE-------------LRSMSDKALG 1156
|
490 500
....*....|....*....|....*....
gi 767994131 1058 SLRTqheaAVKRADHLEELL---EQHRRP 1083
Cdd:PRK04863 1157 ALRL----AVADNEHLRDVLrlsEDPKRP 1181
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
768-1076 |
5.40e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.93 E-value: 5.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 768 QQERERARQRFQQHLEQEqwalqqqrqrLYSEVAEERERLgqqaARQRAELEELRQQLEESssaltraLRAEFEKGREEQ 847
Cdd:pfam01576 37 QLCEEKNALQEQLQAETE----------LCAEAEEMRARL----AARKQELEEILHELESR-------LEEEEERSQQLQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 848 ERRHQMELNT--LKQQLELERQAWEAGRTRKERMspqEAWLLNREQE--LREEIRKGRDKEIELVIHRLEADMALAKEES 923
Cdd:pfam01576 96 NEKKKMQQHIqdLEEQLDEEEAARQKLQLEKVTT---EAKIKKLEEDilLLEDQNSKLSKERKLLEERISEFTSNLAEEE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 924 EKAaeSRIKRLRDKYEAELS--------------ELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQA 989
Cdd:pfam01576 173 EKA--KSLSKLKNKHEAMISdleerlkkeekgrqELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALA 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 990 VNEQLSSERSNLAQVIRqEFEDRLAASEEETRQAKAELATLQaRQQLELEEVHRRVKTALarkEEAVSSLRTQHEAAVKR 1069
Cdd:pfam01576 251 RLEEETAQKNNALKKIR-ELEAQISELQEDLESERAARNKAE-KQRRDLGEELEALKTEL---EDTLDTTAAQQELRSKR 325
|
....*..
gi 767994131 1070 ADHLEEL 1076
Cdd:pfam01576 326 EQEVTEL 332
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
611-705 |
5.43e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.97 E-value: 5.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 611 ALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAELKQEDQrctERVAQAQAQHELEIKKLKELMSATEKA 690
Cdd:PRK00409 527 ELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQ---QAIKEAKKEADEIIKELRQLQKGGYAS 603
|
90
....*....|....*
gi 767994131 691 RREKWISEKTKKIKE 705
Cdd:PRK00409 604 VKAHELIEARKRLNK 618
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
782-1060 |
6.72e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.54 E-value: 6.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 782 LEQEQWALQQQRQrlysEVAEERERLGQQAARQRAELEELRQQLEESSSALtralraefeKGREEQERRHQMELNTLKQQ 861
Cdd:pfam01576 494 LEDERNSLQEQLE----EEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTL---------EALEEGKKRLQRELEALTQQ 560
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 862 LELERQAWEAGRTRKERMSPQEAWLLNREQELREEIRKGRDKEIELvihrleaDMALAKEeseKAAESRIKRLRDKYEAE 941
Cdd:pfam01576 561 LEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKF-------DQMLAEE---KAISARYAEERDRAEAE 630
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 942 -------------------------------------------------LSELEQSERKLQERCSELKGQLGEAEGE--- 969
Cdd:pfam01576 631 areketralslaraleealeakeelertnkqlraemedlvsskddvgknVHELERSKRALEQQVEEMKTQLEELEDElqa 710
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 970 ----NLRL----QGLVRQKERaleDAQAVNEQLSSERSNLAQVIRQefedrLAASEEETRQAKAELATLQARQQLELEEV 1041
Cdd:pfam01576 711 tedaKLRLevnmQALKAQFER---DLQARDEQGEEKRRQLVKQVRE-----LEAELEDERKQRAQAVAAKKKLELDLKEL 782
|
330
....*....|....*....
gi 767994131 1042 HRRVKTALARKEEAVSSLR 1060
Cdd:pfam01576 783 EAQIDAANKGREEAVKQLK 801
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
668-1059 |
7.52e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.42 E-value: 7.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 668 QAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSLHEAE----LLQSDER 743
Cdd:TIGR00606 200 QKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDneikALKSRKK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 744 ASQRCLRQAEELREQLEREKE------------ALGQQERERAR-QRFQQHLEQEQWALQQQRQRLYSEVAE---ERERL 807
Cdd:TIGR00606 280 QMEKDNSELELKMEKVFQGTDeqlndlyhnhqrTVREKERELVDcQRELEKLNKERRLLNQEKTELLVEQGRlqlQADRH 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 808 GQQAARQRAELEELRQQLE----ESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKERMSPQE 883
Cdd:TIGR00606 360 QEHIRARDSLIQSLATRLEldgfERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLG 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 884 AWLLNREQELREEIRKGRDKEIEL------VIHRLEADMALAKEES-----EKAAESRIKRLRDKY-EAELSELEQSERK 951
Cdd:TIGR00606 440 RTIELKKEILEKKQEELKFVIKELqqlegsSDRILELDQELRKAERelskaEKNSLTETLKKEVKSlQNEKADLDRKLRK 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 952 LQERCSELkgqlgEAEGENL-RLQGLVRQKERALEDAQAVNEQLSSERSNLAQVI--RQEFEDRLAASEEETRQAKAELA 1028
Cdd:TIGR00606 520 LDQEMEQL-----NHHTTTRtQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFpnKKQLEDWLHSKSKEINQTRDRLA 594
|
410 420 430
....*....|....*....|....*....|.
gi 767994131 1029 TLQARQQlELEEVHRRVKTALARKEEAVSSL 1059
Cdd:TIGR00606 595 KLNKELA-SLEQNKNHINNELESKEEQLSSY 624
|
|
| PHA03252 |
PHA03252 |
DNA packaging tegument protein UL25; Provisional |
906-1017 |
9.79e-03 |
|
DNA packaging tegument protein UL25; Provisional
Pssm-ID: 223024 Cd Length: 589 Bit Score: 39.70 E-value: 9.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994131 906 ELVIHRLEADMALA-KEESEKAAESRIKRLRDKyeaelSELEQSERKLQERCSELKGQLGEAegENLRLQGLVRQKERAL 984
Cdd:PHA03252 28 EEDLRRLRDDSALRlRRYREDLLRDRLLRRRLG-----EELDDLQKRLQTECEDLRSRVSEA--EALLLHDASGGEGGGA 100
|
90 100 110
....*....|....*....|....*....|...
gi 767994131 985 EDAQAVNEQLSSERSNLAQVIRQEFEDRLAASE 1017
Cdd:PHA03252 101 TNGGEVNVDGGADRTWLAQSPERPADGGPSGER 133
|
|
| |
