|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
575-1023 |
5.15e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.98 E-value: 5.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 575 RLKLEVEEKKQAMLLLQRALA---QQRDLTARRVKETEKALsRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAV 651
Cdd:COG1196 278 ELELELEEAQAEEYELLAELArleQDIARLEERRRELEERL-EELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 652 VAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREkwisEKTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKS 731
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL----AAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 732 LHEAELLQSDERASQRclRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALTRALRAEFEKGREEQ 811
Cdd:COG1196 433 LEEEEEEEEEALEEAA--EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 812 ERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIE-LVIHRLEADMALAKEESEKAAESRI 890
Cdd:COG1196 511 KAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEyLKAAKAGRATFLPLDKIRARAALAA 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 891 KRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVneQLSSERSNLAQVIRQEFED 970
Cdd:COG1196 591 ALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREV--TLEGEGGSAGGSLTGGSRR 668
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 767994127 971 RLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQHE 1023
Cdd:COG1196 669 ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
711-1021 |
2.64e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.67 E-value: 2.64e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 711 LEP-EIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALgqqerERARQRQRAELEELRQQL 789
Cdd:COG1196 202 LEPlERQAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEEL-----EAELAELEAELEELRLEL 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 790 EESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAweagRTRKEEAWLLNREQELREEIRKGRDKEIELvih 869
Cdd:COG1196 277 EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE----ELEEELAELEEELEELEEELEELEEELEEA--- 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 870 RLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEgenLRLQGLVRQKERALEDAQAV 949
Cdd:COG1196 350 EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE---EAEEALLERLERLEEELEEL 426
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767994127 950 NEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQ 1021
Cdd:COG1196 427 EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
576-1023 |
4.22e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.90 E-value: 4.22e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 576 LKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQR---------------------HLAFI 634
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEElrleleeleleleeaqaeeyeLLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 635 DQLIEDKKVLSEKCEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEPE 714
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 715 IQKLIARHKQEVRRLKSL-----HEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQL 789
Cdd:COG1196 378 EEELEELAEELLEALRAAaelaaQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 790 EESSSALTRALRAEFEKGREEQERRHQME------LNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKE 863
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELaeaaarLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYE 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 864 IELVIhRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERA- 942
Cdd:COG1196 538 AALEA-ALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYy 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 943 LEDAQAVNEQLSSERSNLAQVIRQEFEDRLAAS--EEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRT 1020
Cdd:COG1196 617 VLGDTLLGRTLVAARLEAALRRAVTLAGRLREVtlEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELE 696
|
...
gi 767994127 1021 QHE 1023
Cdd:COG1196 697 EAL 699
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
567-1021 |
2.49e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 71.71 E-value: 2.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 567 SEVSTSVMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATiQRHLAFIDQLIEDKKVLSE 646
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD-EAEAAEEKAEAAEKKKEEA 1376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 647 KCEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVtvrglepeiqkliarhKQEV 726
Cdd:PTZ00121 1377 KKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA----------------KKKA 1440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 727 RRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEAlgqqererarqRQRAELEELRQQLEESSSALTRALRAEFEK 806
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKA-----------EEAKKADEAKKKAEEAKKKADEAKKAAEAK 1509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 807 GREEQERRhqMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEAD--MALAK-EESE 883
Cdd:PTZ00121 1510 KKADEAKK--AEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDknMALRKaEEAK 1587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 884 KAAESRIKRLRDKYEAELSELEQSERKLQERCSELKgQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQV 963
Cdd:PTZ00121 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE-ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767994127 964 IRQEFEDRLAASE----EETRQAKAELATLQARQQLELEEVHRRV-----KTALARKEEAVSSLRTQ 1021
Cdd:PTZ00121 1667 AKKAEEDKKKAEEakkaEEDEKKAAEALKKEAEEAKKAEELKKKEaeekkKAEELKKAEEENKIKAE 1733
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
782-1021 |
7.15e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 7.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 782 LEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAweagRTRKEEAWLLNREQELREEIRKGRD 861
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA----QLSKELTELEAEIEELEERLEEAEE 775
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 862 --KEIELVIHRLEADMALAKEESeKAAESRIKRLRdkyeAELSELEQSERKLQERCSELKGQLGEAEgenLRLQGLVRQK 939
Cdd:TIGR02168 776 elAEAEAEIEELEAQIEQLKEEL-KALREALDELR----AELTLLNEEAANLRERLESLERRIAATE---RRLEDLEEQI 847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 940 ERALEDAQAVNEQLSSERSNLAQVIRQ--EFEDRLAASEEETRQAKAELATLQARQQlELEEVHRRVKTALARKEEAVSS 1017
Cdd:TIGR02168 848 EELSEDIESLAAEIEELEELIEELESEleALLNERASLEEALALLRSELEELSEELR-ELESKRSELRRELEELREKLAQ 926
|
....
gi 767994127 1018 LRTQ 1021
Cdd:TIGR02168 927 LELR 930
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
575-1013 |
9.29e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.58 E-value: 9.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 575 RLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREhyEATIQRHLAFIDQLIEDKKVLSEKCEAVVAE 654
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE--LLEALRAAAELAAQLEELEEAEEALLERLER 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 655 LKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSLHE 734
Cdd:COG1196 419 LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 735 AELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALTRALRAEFEK-GREE--- 810
Cdd:COG1196 499 AEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKaGRATflp 578
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 811 --QERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAES 888
Cdd:COG1196 579 ldKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSA 658
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 889 RIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEF 968
Cdd:COG1196 659 GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELL 738
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 767994127 969 EDRLAASEEETRQAKAELATLqarqqLELEEVHRRVKTALARKEE 1013
Cdd:COG1196 739 EELLEEEELLEEEALEELPEP-----PDLEELERELERLEREIEA 778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
280-940 |
4.84e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.47 E-value: 4.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 280 RHQVQRRGAGAARLEhllQAKREEQRQRSGEGTLLDLHQQKEAARRKAREEKARQARRAAiqelQQKRALRAQKASTAER 359
Cdd:PTZ00121 1165 KAEEARKAEDAKKAE---AARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAE----DAKKAEAVKKAEEAKK 1237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 360 GPPENPRETRVpgmRQPAQELSPTPGGTAHQALKANNTGGGLPAAGPGDRCLPTSDSSPEPQQPPEDRTQDVLaqdaagd 439
Cdd:PTZ00121 1238 DAEEAKKAEEE---RNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEA------- 1307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 440 nlemmapsRGSAKSRGPLEELLHTLQLLEKEPDVLPRPrthhrgryawASEVTTEDDASSLTADNLEKfgKLSAFPEPPE 519
Cdd:PTZ00121 1308 --------KKKAEEAKKADEAKKKAEEAKKKADAAKKK----------AEEAKKAAEAAKAEAEAAAD--EAEAAEEKAE 1367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 520 DGTL-LSEAKLQSIMSFLDEMEKSGQDQLDSQQEGWVPEAGPgpLELGSEVSTSVMRLKLEVEEKKQAMLLLQRALAQQR 598
Cdd:PTZ00121 1368 AAEKkKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE--LKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 599 DLTARRVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAELKQEDQrctERVAQAQAQHELEIK 678
Cdd:PTZ00121 1446 ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAE---AKKKADEAKKAEEAK 1522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 679 KLKELMSATEKARREKW-ISEKTKKIKEV----TVRGLEpEIQKLIARHKQEVRRLKSLHEAELLQSDERAsqRCLRQAE 753
Cdd:PTZ00121 1523 KADEAKKAEEAKKADEAkKAEEKKKADELkkaeELKKAE-EKKKAEEAKKAEEDKNMALRKAEEAKKAEEA--RIEEVMK 1599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 754 ELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSAL---------------TRALRAEFEKGREEQERRHQME 818
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEaeekkkaeelkkaeeENKIKAAEEAKKAEEDKKKAEE 1679
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 819 LntlKQQLELERQAWEAGRTRKEEAwllNREQELR----EEIRKGRD--KEIELVIHRLEADMALAKEESEKAAESRikr 892
Cdd:PTZ00121 1680 A---KKAEEDEKKAAEALKKEAEEA---KKAEELKkkeaEEKKKAEElkKAEEENKIKAEEAKKEAEEDKKKAEEAK--- 1750
|
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 767994127 893 lrdKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKE 940
Cdd:PTZ00121 1751 ---KDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRME 1795
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
567-1015 |
2.07e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.16 E-value: 2.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 567 SEVSTSVMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHyeatiqrhlafIDQLIEDKKVLSE 646
Cdd:PTZ00121 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE-----------KKKADEAKKKAEE 1442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 647 KCEAVVAELKQEDQRCTERvAQAQAQhelEIKKLKELMSATEKARREKwisEKTKKIKEVTVRGLEPEIQKLIARHKQEV 726
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEE-AKKKAE---EAKKADEAKKKAEEAKKAD---EAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 727 RRLKSLHEAELLQSDERAsqrclRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALTRALRA-EFE 805
Cdd:PTZ00121 1516 KKAEEAKKADEAKKAEEA-----KKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAkKAE 1590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 806 KGREEQERRHQMELNTLKQQlelERQAWEAGRTRKEEawlLNREQELREEIRKGRDKEIELVIHRLEadmaLAKEESE-- 883
Cdd:PTZ00121 1591 EARIEEVMKLYEEEKKMKAE---EAKKAEEAKIKAEE---LKKAEEEKKKVEQLKKKEAEEKKKAEE----LKKAEEEnk 1660
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 884 -KAAESRIKRLRDKYEAE-LSELEQSERKLQErcselkgQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLA 961
Cdd:PTZ00121 1661 iKAAEEAKKAEEDKKKAEeAKKAEEDEKKAAE-------ALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAE 1733
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 767994127 962 QVIRQEFEDRLAAseEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAV 1015
Cdd:PTZ00121 1734 EAKKEAEEDKKKA--EEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL 1785
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
650-1000 |
3.24e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 3.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 650 AVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIK----EVTVRGLEPEIQKLIARHKQE 725
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLkekrEYEGYELLKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 726 VRRLKSLhEAELLQSDERASQRCLRQAEELREQLEREKE--ALGQQERErarqrqraeleELRQQLEESSSALTRALRAE 803
Cdd:TIGR02169 243 ERQLASL-EEELEKLTEEISELEKRLEEIEQLLEELNKKikDLGEEEQL-----------RVKEKIGELEAEIASLERSI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 804 FEKGREEQ---ERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKeielvIHRLEADMALAKE 880
Cdd:TIGR02169 311 AEKERELEdaeERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAE-----LEEVDKEFAETRD 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 881 ESeKAAESRIkrlrDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNL 960
Cdd:TIGR02169 386 EL-KDYREKL----EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL 460
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 767994127 961 AQV---IRQEFEDR---LAASEEETRQAKAELATLQARQQLELEEV 1000
Cdd:TIGR02169 461 AADlskYEQELYDLkeeYDRVEKELSKLQRELAEAEAQARASEERV 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
676-992 |
7.22e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 7.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 676 EIKKLKELMSATEKARREKwisEKTKKIKEVTVRGLEPEIQKLIARhKQEVRRLKSLHEAELLQSDERASQRCLRQAEEL 755
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAEL---EKALAELRKELEELEEELEQLRKE-LEELSRQISALRKDLARLEAEVEQLEERIAQLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 756 REQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEA 835
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 836 GRTRKEEAWLLNREQELREeirkgrdkEIELVIHRLEaDMALAKEESEKAAESrikrlrdkYEAELSELEQSERKLQERC 915
Cdd:TIGR02168 834 AATERRLEDLEEQIEELSE--------DIESLAAEIE-ELEELIEELESELEA--------LLNERASLEEALALLRSEL 896
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767994127 916 SELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQAR 992
Cdd:TIGR02168 897 EELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRR 973
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
610-1020 |
1.32e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.39 E-value: 1.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 610 KALSRQLQRQREHYEATIQRHlAFIDQLIEDKKVLSEKCEAVVAELKQEDQRCTERVAQAQAqhelEIKKLKELMSATEK 689
Cdd:PRK03918 168 GEVIKEIKRRIERLEKFIKRT-ENIEELIKEKEKELEEVLREINEISSELPELREELEKLEK----EVKELEELKEEIEE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 690 ARREKWISEKTKKIKEVTVRGLEPEIQKLIARHK---QEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEAL 766
Cdd:PRK03918 243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEeleEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 767 --GQQERERARQRQRAELEELRQQLEESSSALtralrAEFEKGREEQERRHQMELNtlKQQLELERQAWEAGRTRKEEAW 844
Cdd:PRK03918 323 inGIEERIKELEEKEERLEELKKKLKELEKRL-----EELEERHELYEEAKAKKEE--LERLKKRLTGLTPEKLEKELEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 845 LLNREQELREEIRKGRDKEIELviHRLEADMALAKEESEKA-----------AESRIKRLRDKYEAELSELEQSERKLQE 913
Cdd:PRK03918 396 LEKAKEEIEEEISKITARIGEL--KKEIKELKKAIEELKKAkgkcpvcgrelTEEHRKELLEEYTAELKRIEKELKEIEE 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 914 RCSELKGQLGEAEGENLRLQGLVRQKERAledaqavnEQLSSERSNLAQVIRQEFEdrlaASEEETRQAKAELATLQARQ 993
Cdd:PRK03918 474 KERKLRKELRELEKVLKKESELIKLKELA--------EQLKELEEKLKKYNLEELE----KKAEEYEKLKEKLIKLKGEI 541
|
410 420
....*....|....*....|....*..
gi 767994127 994 qleleevhRRVKTALARKEEAVSSLRT 1020
Cdd:PRK03918 542 --------KSLKKELEKLEELKKKLAE 560
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
537-1015 |
2.21e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.08 E-value: 2.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 537 DEMEKSGQDQLDSQQEGWVPEAGPGPLELGSEVSTSvmrlklevEEKKQAMLLLQRALAQQRDLTARRVKETEKAL-SRQ 615
Cdd:PTZ00121 1082 DAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKA--------EEAKKKAEDARKAEEARKAEDARKAEEARKAEdAKR 1153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 616 LQRQREHYEAtiqrHLAFIDQLIEDKKVLSEKCEAVVAElKQEDQRCTERVAQAQAQHELE-IKKLKELMSATEKARREK 694
Cdd:PTZ00121 1154 VEIARKAEDA----RKAEEARKAEDAKKAEAARKAEEVR-KAEELRKAEDARKAEAARKAEeERKAEEARKAEDAKKAEA 1228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 695 WISEKTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREK-EALGQQERER 773
Cdd:PTZ00121 1229 VKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKaEEKKKADEAK 1308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 774 ARQRQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMElnTLKQQLELERQAWEAGRTRKEEAwlLNREQELR 853
Cdd:PTZ00121 1309 KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAE--AAADEAEAAEEKAEAAEKKKEEA--KKKADAAK 1384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 854 ---EEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKlqeRCSELKGQLGEA-EGEN 929
Cdd:PTZ00121 1385 kkaEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK---KADEAKKKAEEAkKAEE 1461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 930 LRLQGlvRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALA 1009
Cdd:PTZ00121 1462 AKKKA--EEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA 1539
|
....*.
gi 767994127 1010 RKEEAV 1015
Cdd:PTZ00121 1540 KKAEEK 1545
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
591-1015 |
2.63e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 2.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 591 QRALAQQRDLTARRVKETEKALSRQlQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVaelKQEDQRCTERVAQAQ 670
Cdd:PTZ00121 1212 RKAEEARKAEDAKKAEAVKKAEEAK-KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAI---KAEEARKADELKKAE 1287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 671 -------AQHELEIKKLKELMSATEKARR----EKWISEKTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSLHEAELLQ 739
Cdd:PTZ00121 1288 ekkkadeAKKAEEKKKADEAKKKAEEAKKadeaKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 740 SDERASQRCLRQAEELREQLEREKEAlgqQERERARQRQRAELEELRQQLEESSSALTRALRAEFEKGREEQERR--HQM 817
Cdd:PTZ00121 1368 AAEKKKEEAKKKADAAKKKAEEKKKA---DEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKaeEAK 1444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 818 ELNTLKQQLELERQAWEAGRtRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKY 897
Cdd:PTZ00121 1445 KADEAKKKAEEAKKAEEAKK-KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 898 EAELSELEQSERKLQERCSELKGQLGEA-EGENLRLQGLVR---QKERALED----AQAVNEQLSSERSNLAQVIRQEFE 969
Cdd:PTZ00121 1524 ADEAKKAEEAKKADEAKKAEEKKKADELkKAEELKKAEEKKkaeEAKKAEEDknmaLRKAEEAKKAEEARIEEVMKLYEE 1603
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 767994127 970 DRLAASEEETRqakAELATLQARQQLELEEVHRRVKTALARKEEAV 1015
Cdd:PTZ00121 1604 EKKMKAEEAKK---AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK 1646
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
568-966 |
3.52e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.24 E-value: 3.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 568 EVSTSVMRLKLEVEEKKQAMLLLQRALAQQ---RDLTARRVKETEKALSRQLQRQREHYEAtIQRHLAFIDQLIEDKKVL 644
Cdd:TIGR02169 181 EVEENIERLDLIIDEKRQQLERLRREREKAeryQALLKEKREYEGYELLKEKEALERQKEA-IERQLASLEEELEKLTEE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 645 SEKCEAVVAELKQEDQRCTERVAQAQAQHELEIK-KLKELMSATEKARREkwISEKTKKIKEvtvrgLEPEIQKLIArhk 723
Cdd:TIGR02169 260 ISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKeKIGELEAEIASLERS--IAEKERELED-----AEERLAKLEA--- 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 724 qEVRRLKSLHEaellQSDERASQRCLRQAEELREQLEREKEalgqqererarqrqraeLEELRQQLEESSSALtRALRAE 803
Cdd:TIGR02169 330 -EIDKLLAEIE----ELEREIEEERKRRDKLTEEYAELKEE-----------------LEDLRAELEEVDKEF-AETRDE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 804 FEKGREEQERrHQMELNTLKQqlELERQAWEAGRTRKEEAwllnreqELREEIRKGRDKEIELVIHRLEADMALAKEESE 883
Cdd:TIGR02169 387 LKDYREKLEK-LKREINELKR--ELDRLQEELQRLSEELA-------DLNAAIAGIEAKINELEEEKEDKALEIKKQEWK 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 884 KaaeSRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGEnlrlqglVRQKERALEDAQAVNEQLSSERSNLAQV 963
Cdd:TIGR02169 457 L---EQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ-------ARASEERVRGGRAVEEVLKASIQGVHGT 526
|
...
gi 767994127 964 IRQ 966
Cdd:TIGR02169 527 VAQ 529
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
782-1030 |
1.99e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.54 E-value: 1.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 782 LEELRQQLEESSSALtRALRAEFEKGREEQER--RHQMELNTLKQQLELERqaweaGRTRKEEAWLLNRE---QELREEI 856
Cdd:PRK03918 202 LEEVLREINEISSEL-PELREELEKLEKEVKEleELKEEIEELEKELESLE-----GSKRKLEEKIRELEeriEELKKEI 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 857 RKGRDKEIELvihrleadmalaKEESEKAAE-SRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGL 935
Cdd:PRK03918 276 EELEEKVKEL------------KELKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEEL 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 936 VRQKE-------------RALEDAQAVNEQLSSERSNLAQVIRQEFEDRLaaseEETRQAKAELatlqARQQLELEEVHR 1002
Cdd:PRK03918 344 KKKLKelekrleeleerhELYEEAKAKKEELERLKKRLTGLTPEKLEKEL----EELEKAKEEI----EEEISKITARIG 415
|
250 260
....*....|....*....|....*....
gi 767994127 1003 RVKTALARKEEAVSSLRTQHEVSP-CGQP 1030
Cdd:PRK03918 416 ELKKEIKELKKAIEELKKAKGKCPvCGRE 444
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
579-1014 |
4.01e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 57.54 E-value: 4.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 579 EVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQ---LQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAEL 655
Cdd:pfam12128 277 RQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAAdaaVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSEL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 656 KQEDQRC---TERVAQAQAQHELEIKKLKElmsatEKARREKWISEKTKKIKEVTVRGLEPE---IQKL----------- 718
Cdd:pfam12128 357 ENLEERLkalTGKHQDVTAKYNRRRSKIKE-----QNNRDIAGIKDKLAKIREARDRQLAVAeddLQALeselreqleag 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 719 IARHKQEVRRLKS-LHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRaeLEELRQQLEESSSALT 797
Cdd:pfam12128 432 KLEFNEEEYRLKSrLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSE--LRQARKRRDQASEALR 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 798 RALRAEFEKGREEQERRHQM--ELNTLKQQLELERQAWEAGRTRKEEAWLLNReQELREEIRKGRDKEiELVIHRLEADM 875
Cdd:pfam12128 510 QASRRLEERQSALDELELQLfpQAGTLLHFLRKEAPDWEQSIGKVISPELLHR-TDLDPEVWDGSVGG-ELNLYGVKLDL 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 876 ALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRlqglvrqKERALEDAQAVNEQLSS 955
Cdd:pfam12128 588 KRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETF-------ARTALKNARLDLRRLFD 660
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 767994127 956 ERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEA 1014
Cdd:pfam12128 661 EKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAY 719
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
820-1022 |
4.81e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.23 E-value: 4.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 820 NTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDK--EIELVIHRLEADMALAKEESEKAAESRIKRLRDKY 897
Cdd:COG4913 228 DALVEHFDDLERAHEALEDAREQIELLEPIRELAERYAAARERlaELEYLRAALRLWFAQRRLELLEAELEELRAELARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 898 EAELSELEQSERKLQERCSELKGQLGEAEGENL-RLQGLVRQKERALEDAQAVNEQLSSERSNLAQVI---RQEFEDRLA 973
Cdd:COG4913 308 EAELERLEARLDALREELDELEAQIRGNGGDRLeQLEREIERLERELEERERRRARLEALLAALGLPLpasAEEFAALRA 387
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 767994127 974 ASEEETRQAKAELATLQARQQlELEEVHRRVKTALARKEEAVSSLRTQH 1022
Cdd:COG4913 388 EAAALLEALEEELEALEEALA-EAEAALRDLRRELRELEAEIASLERRK 435
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
782-1023 |
5.74e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 5.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 782 LEELRQQLEESSSALTRaLRAEFEKGREEQERRhQMELNTLKQQL-ELERQAweaGRTRKEEAWLLNREQELREEIRKGR 860
Cdd:TIGR02168 255 LEELTAELQELEEKLEE-LRLEVSELEEEIEEL-QKELYALANEIsRLEQQK---QILRERLANLERQLEELEAQLEELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 861 DKEIEL--VIHRLEADMALAKEESEkAAESRIKRLRDKYEaelsELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQ 938
Cdd:TIGR02168 330 SKLDELaeELAELEEKLEELKEELE-SLEAELEELEAELE----ELESRLEELEEQLETLRSKVAQLELQIASLNNEIER 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 939 KERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRvktaLARKEEAVSSL 1018
Cdd:TIGR02168 405 LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE----LEEAEQALDAA 480
|
....*
gi 767994127 1019 RTQHE 1023
Cdd:TIGR02168 481 ERELA 485
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
835-1023 |
1.35e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 1.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 835 AGRTRKEEAWLLNREQELREeirkgrdkeielvihrLEADMALAkEESEKAAESRIKRLRDKYEAELSELEQSERKLQE- 913
Cdd:TIGR02168 662 TGGSAKTNSSILERRREIEE----------------LEEKIEEL-EEKIAELEKALAELRKELEELEEELEQLRKELEEl 724
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 914 --RCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIrQEFEDRLAASEEETRQAKAELATLQa 991
Cdd:TIGR02168 725 srQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL-AEAEAEIEELEAQIEQLKEELKALR- 802
|
170 180 190
....*....|....*....|....*....|..
gi 767994127 992 RQQLELEEVHRRVKTALARKEEAVSSLRTQHE 1023
Cdd:TIGR02168 803 EALDELRAELTLLNEEAANLRERLESLERRIA 834
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
784-1023 |
1.43e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 55.51 E-value: 1.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 784 ELRQQLEESSSALTRALR------AEFEKGREEQERR-HQMELNTLKQQLELERQ---AWEAGRTRKEEAWLLNREQE-- 851
Cdd:pfam17380 313 ERRRKLEEAEKARQAEMDrqaaiyAEQERMAMERERElERIRQEERKRELERIRQeeiAMEISRMRELERLQMERQQKne 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 852 -LREEIRKGR-----DKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEA 925
Cdd:pfam17380 393 rVRQELEAARkvkilEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEER 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 926 EGENLRLQGLVRQKERALEDAQavneqlssersnlaQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVK 1005
Cdd:pfam17380 473 KRKKLELEKEKRDRKRAEEQRR--------------KILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREA 538
|
250
....*....|....*...
gi 767994127 1006 TALARKEEAVSSLRTQHE 1023
Cdd:pfam17380 539 EEERRKQQEMEERRRIQE 556
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
782-988 |
5.74e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 5.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 782 LEELRQQLEESSSAL--TRALRAEFEKGREEQERR---HQMELNTLKQQLELERQawEAGRTRKEEAWLLNREQELREEI 856
Cdd:COG4942 29 LEQLQQEIAELEKELaaLKKEEKALLKQLAALERRiaaLARRIRALEQELAALEA--ELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 857 --------RKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGE 928
Cdd:COG4942 107 aellralyRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 929 NLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQvIRQEFEDRLAASEEETRQAKAELAT 988
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELAAELAELQQ-EAEELEALIARLEAEAAAAAERTPA 245
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
574-991 |
6.81e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 53.64 E-value: 6.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 574 MRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFI-------DQLIEDKKVLSE 646
Cdd:pfam01576 80 LESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDIllledqnSKLSKERKLLEE 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 647 KCEAVVAELKQEDQRcTERVAQAQAQHELEIKKLKELMSATEKARREkwiSEKTKKIKEvtvrGLEPEIQKLIARHKQEV 726
Cdd:pfam01576 160 RISEFTSNLAEEEEK-AKSLSKLKNKHEAMISDLEERLKKEEKGRQE---LEKAKRKLE----GESTDLQEQIAELQAQI 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 727 RRLK---SLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALTRALRAE 803
Cdd:pfam01576 232 AELRaqlAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDT 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 804 FEKGREEQERRHQ--MELNTLKQQLELERQAWEA--GRTRKEEAWLLNREQELREEIRKGRdKEIELVIHRLEAD----- 874
Cdd:pfam01576 312 LDTTAAQQELRSKreQEVTELKKALEEETRSHEAqlQEMRQKHTQALEELTEQLEQAKRNK-ANLEKAKQALESEnaelq 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 875 -----MALAKEESE---KAAESRIKRLRDKY-EAELSELEQSER--KLQERCSELKGQLGEAEGENLRLQGLVRQKERAL 943
Cdd:pfam01576 391 aelrtLQQAKQDSEhkrKKLEGQLQELQARLsESERQRAELAEKlsKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQL 470
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 767994127 944 EDAQAVNEQLSSERSNLAQVIRQEFEDR------LAASEEETRQAKAELATLQA 991
Cdd:pfam01576 471 QDTQELLQEETRQKLNLSTRLRQLEDERnslqeqLEEEEEAKRNVERQLSTLQA 524
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
712-978 |
1.10e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 712 EPEIQKLIARHKQEVRRLKSLHEAELlqsDERASQRCLRQAEELREQLEREKEALGQQERERARQR---QRAELEELRQQ 788
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALE---DAREQIELLEPIRELAERYAAARERLAELEYLRAALRlwfAQRRLELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 789 LEESSSALTRAlraefekgrEEQERRHQMELNTLKQQL-ELERQAWEAGrtrkeeawlLNREQELREEIRkGRDKEIELV 867
Cdd:COG4913 297 LEELRAELARL---------EAELERLEARLDALREELdELEAQIRGNG---------GDRLEQLEREIE-RLERELEER 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 868 IHRLEADMALAK--EESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLgeaegenlrlqglvRQKERALED 945
Cdd:COG4913 358 ERRRARLEALLAalGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAL--------------RDLRRELRE 423
|
250 260 270
....*....|....*....|....*....|....*.
gi 767994127 946 AQAVNEQLSSERSNL---AQVIRQEFEDRLAASEEE 978
Cdd:COG4913 424 LEAEIASLERRKSNIparLLALRDALAEALGLDEAE 459
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
563-914 |
1.65e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 52.28 E-value: 1.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 563 LELGSEVSTSVMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKK 642
Cdd:pfam02463 642 KAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEE 721
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 643 VLSEKCEAVVAELKQEDQRCTERVAQAQA-QHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKLIAR 721
Cdd:pfam02463 722 LLADRVQEAQDKINEELKLLKQKIDEEEEeEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEE 801
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 722 HKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESS-----SAL 796
Cdd:pfam02463 802 ELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLlkeeeLEE 881
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 797 TRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEAD-- 874
Cdd:pfam02463 882 QKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEer 961
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 767994127 875 ---MALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQER 914
Cdd:pfam02463 962 nkrLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEK 1004
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
593-1023 |
2.03e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.96 E-value: 2.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 593 ALAQQRDLTARRVKETEKALSRQLQRQREHyEATIQRHLAFIDQLIEDKKVLSEKceavVAELKQEDQRCTERVAQAQAQ 672
Cdd:PRK02224 311 AVEARREELEDRDEELRDRLEECRVAAQAH-NEEAESLREDADDLEERAEELREE----AAELESELEEAREAVEDRREE 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 673 HELEIKKLKELMSATEKArrekwisektkkikEVTVRGLEPEIQKLIARHKQEVRRLKSLhEAELLQSDER-ASQRCLRQ 751
Cdd:PRK02224 386 IEELEEEIEELRERFGDA--------------PVDLGNAEDFLEELREERDELREREAEL-EATLRTARERvEEAEALLE 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 752 AEELREQLEREKE---ALGQQERERARQRQRAELEELRQQLEESSSALTRALRA-EFEKGREEQERRHQmelnTLKQQLE 827
Cdd:PRK02224 451 AGKCPECGQPVEGsphVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLvEAEDRIERLEERRE----DLEELIA 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 828 LERQAWEAGRTRKEEawLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAA-ESRIKRLrDKYEAELSELEQ 906
Cdd:PRK02224 527 ERRETIEEKRERAEE--LRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAElKERIESL-ERIRTLLAAIAD 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 907 SERKLQERCSELKGQlgeAEGENLRLQGLVRQKERALEDAQAVNEqlssERSNLAQVIRQEFEDRLAASEEETRQAKAEL 986
Cdd:PRK02224 604 AEDEIERLREKREAL---AELNDERRERLAEKRERKRELEAEFDE----ARIEEAREDKERAEEYLEQVEEKLDELREER 676
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 767994127 987 ATLQAR---QQLELEEVhRRVKTALARKEEAVSSLRTQHE 1023
Cdd:PRK02224 677 DDLQAEigaVENELEEL-EELRERREALENRVEALEALYD 715
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
567-971 |
2.48e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.69 E-value: 2.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 567 SEVSTSVMRLKLEVEEKKQAMLLLQRALAQQRDLtarrvkETEKALSRQLQRQREHYEAtIQRHLAFIDQLIEDKKVLSE 646
Cdd:COG4717 98 EELEEELEELEAELEELREELEKLEKLLQLLPLY------QELEALEAELAELPERLEE-LEERLEELRELEEELEELEA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 647 KCEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSA--TEKARREKWISEKTKKIKEVTVRGLEPEIQKLIARHKQ 724
Cdd:COG4717 171 ELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAEleEELEEAQEELEELEEELEQLENELEAAALEERLKEARL 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 725 EVRRLKSLHEAELLQSDERASQR-------------CLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEE 791
Cdd:COG4717 251 LLLIAAALLALLGLGGSLLSLILtiagvlflvlgllALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGL 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 792 SSSALTRALRAEFEKGREEQERRHQMElnTLKQQLELERQaweagrtRKEEAWLLNR-----EQELREEIRKGRD----- 861
Cdd:COG4717 331 PPDLSPEELLELLDRIEELQELLREAE--ELEEELQLEEL-------EQEIAALLAEagvedEEELRAALEQAEEyqelk 401
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 862 KEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENlRLQGLVRQKER 941
Cdd:COG4717 402 EELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDG-ELAELLQELEE 480
|
410 420 430
....*....|....*....|....*....|..
gi 767994127 942 ALEDAQAVNEQLSSER--SNLAQVIRQEFEDR 971
Cdd:COG4717 481 LKAELRELAEEWAALKlaLELLEEAREEYREE 512
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
782-1030 |
4.50e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 4.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 782 LEELRQQLEESSSAL-TRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAgrtrkEEAWLLNREQELREEIRKgr 860
Cdd:TIGR02169 704 LDELSQELSDASRKIgEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS-----ELKELEARIEELEEDLHK-- 776
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 861 dkeIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKE 940
Cdd:TIGR02169 777 ---LEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE 853
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 941 RALEDAQAVNEQLSSERSNLAQVIRqEFEDRLAASEEETRQAKAELATLQARQQ---LELEEVHRRVKTALARKEEAVSS 1017
Cdd:TIGR02169 854 KEIENLNGKKEELEEELEELEAALR-DLESRLGDLKKERDELEAQLRELERKIEeleAQIEKKRKRLSELKAKLEALEEE 932
|
250
....*....|...
gi 767994127 1018 LRTQHEVSPCGQP 1030
Cdd:TIGR02169 933 LSEIEDPKGEDEE 945
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
575-1013 |
4.82e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.83 E-value: 4.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 575 RLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSR--QLQRQREHYEATIQRHLAFIDQLIEDKKVLS------- 645
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKElkELKEKAEEYIKLSEFYEEYLDELREIEKRLSrleeein 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 646 ---------EKCEAVVAELKQEDQRCTERVAQAQAQHEL--EIKKLKELMSATEKARREKWISEKTKKIKEVTVRG--LE 712
Cdd:PRK03918 325 gieerikelEEKEERLEELKKKLKELEKRLEELEERHELyeEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKeeIE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 713 PEIQKLIARHKQEVRRLKSLHEA-ELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEE 791
Cdd:PRK03918 405 EEISKITARIGELKKEIKELKKAiEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRE 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 792 SSSALTRALRAEFEKGREEQERRHQMELNtlKQQLELERQAWEAGRTRKEEAWLLNREQE-LREEIRKGRD--KEIELVI 868
Cdd:PRK03918 485 LEKVLKKESELIKLKELAEQLKELEEKLK--KYNLEELEKKAEEYEKLKEKLIKLKGEIKsLKKELEKLEElkKKLAELE 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 869 HRLEAdmalaKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQA 948
Cdd:PRK03918 563 KKLDE-----LEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAE 637
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767994127 949 VNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQAR-QQLE--LEEVHRRVKTALARKEE 1013
Cdd:PRK03918 638 TEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAElEELEkrREEIKKTLEKLKEELEE 705
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
578-1023 |
6.23e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.50 E-value: 6.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 578 LEVEEKKQAMLLLQRALAQQRdltaRRVKETEKALSRQLQRQREHYEAT-------IQRHLAFIDQLieDKKVLSEkcEA 650
Cdd:pfam15921 113 IDLQTKLQEMQMERDAMADIR----RRESQSQEDLRNQLQNTVHELEAAkclkedmLEDSNTQIEQL--RKMMLSH--EG 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 651 VVAELKQEDQRCTERVAQAQAQHE-LEIKKLKELMSATEKARRE--KWISEKTKKIKEV--TVRGLEPE----IQKLIAR 721
Cdd:pfam15921 185 VLQEIRSILVDFEEASGKKIYEHDsMSTMHFRSLGSAISKILREldTEISYLKGRIFPVedQLEALKSEsqnkIELLLQQ 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 722 HKQEVRRLKSLHEAELLQSDERASQrCLRQAEELREQLEREKEalgqqereRARQRQRAELEELrQQLEESSSALTRALR 801
Cdd:pfam15921 265 HQDRIEQLISEHEVEITGLTEKASS-ARSQANSIQSQLEIIQE--------QARNQNSMYMRQL-SDLESTVSQLRSELR 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 802 aefekgreEQERRHQMELNTLKQQLELERQAWEAGRTRKEEawLLNREQELREEIRKgrdkeIELVIHRLEADMALAKEE 881
Cdd:pfam15921 335 --------EAKRMYEDKIEELEKQLVLANSELTEARTERDQ--FSQESGNLDDQLQK-----LLADLHKREKELSLEKEQ 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 882 SekaaesriKRLRDKYEAELSELEQSERKLQERCSE-------LKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLS 954
Cdd:pfam15921 400 N--------KRLWDRDTGNSITIDHLRRELDDRNMEvqrlealLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLE 471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 955 SERSNLAQVIRQ--------EFEDR----LAASEEETRQA----KAELATLQARQQLELEEV--------HRR------- 1003
Cdd:pfam15921 472 STKEMLRKVVEEltakkmtlESSERtvsdLTASLQEKERAieatNAEITKLRSRVDLKLQELqhlknegdHLRnvqtece 551
|
490 500
....*....|....*....|.
gi 767994127 1004 -VKTALARKEEAVSSLRTQHE 1023
Cdd:pfam15921 552 aLKLQMAEKDKVIEILRQQIE 572
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
584-1025 |
7.73e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.77 E-value: 7.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 584 KQAMLLLQRALAQQRDLTARRVKETEKALsRQLQRQREHYEATIQRhLAFIDQLIEDKKVLSEKCEAVVAELKQEDQRCT 663
Cdd:COG4717 52 EKEADELFKPQGRKPELNLKELKELEEEL-KEAEEKEEEYAELQEE-LEELEEELEELEAELEELREELEKLEKLLQLLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 664 ERVAQAQAQHELE--IKKLKELmsateKARREKWISektkkiKEVTVRGLEPEIQKLiARHKQEVRRLKSLHEAELLQSD 741
Cdd:COG4717 130 LYQELEALEAELAelPERLEEL-----EERLEELRE------LEEELEELEAELAEL-QEELEELLEQLSLATEEELQDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 742 ERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEE-SSSALTRALRAEFEKGREEQERRHQMELN 820
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEaRLLLLIAAALLALLGLGGSLLSLILTIAG 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 821 TLKQQLELerQAWEAGRTRKEEAWLLNREQELR--EEIRKGRDKEIELVIHRLEADMALAKEESEKAAES--RIKRLRDK 896
Cdd:COG4717 278 VLFLVLGL--LALLFLLLAREKASLGKEAEELQalPALEELEEEELEELLAALGLPPDLSPEELLELLDRieELQELLRE 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 897 YEAELSELEQSERKlQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLaase 976
Cdd:COG4717 356 AEELEEELQLEELE-QEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEEL---- 430
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 767994127 977 eetrqaKAELATLQARQQlELEEVHRRVKTALARKEEAVSSLRTQHEVS 1025
Cdd:COG4717 431 ------EEELEELEEELE-ELEEELEELREELAELEAELEQLEEDGELA 472
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
831-1021 |
3.21e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 3.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 831 QAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELV--IHRLEADMALAKEEsEKAAESRIKRLrdkyEAELSELEQSE 908
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLkqLAALERRIAALARR-IRALEQELAAL----EAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 909 RKLQERCSELKGQLGE------AEGENLRLQGLVRQKE-RALEDAQAVNEQLSSERSNLAQVIRQEFEdRLAASEEETRQ 981
Cdd:COG4942 93 AELRAELEAQKEELAEllralyRLGRQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLA-ELAALRAELEA 171
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 767994127 982 AKAELATL---QARQQLELEEVHRRVKTALARKEEAVSSLRTQ 1021
Cdd:COG4942 172 ERAELEALlaeLEEERAALEALKAERQKLLARLEKELAELAAE 214
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
782-1027 |
3.64e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.91 E-value: 3.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 782 LEELRQQLEESSSALTRALRAeFEKGREEQER---RHQMELNTLKQQLELERQAWEAGRTR--KEEAWLLNREQELREEI 856
Cdd:pfam12128 627 LVQANGELEKASREETFARTA-LKNARLDLRRlfdEKQSEKDKKNKALAERKDSANERLNSleAQLKQLDKKHQAWLEEQ 705
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 857 rkgRDKEIELVIHRLEADMALakEESEKAAESRIK----RLRDKYEAELSELEqserklQERCSELKGqLGEAEGENLRL 932
Cdd:pfam12128 706 ---KEQKREARTEKQAYWQVV--EGALDAQLALLKaaiaARRSGAKAELKALE------TWYKRDLAS-LGVDPDVIAKL 773
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 933 QGLVRQKERALEDA-----------QAVNEQLSSERSNLAQVIRQ------EFEDRLAASEEETRQAKAELAT---LQAR 992
Cdd:pfam12128 774 KREIRTLERKIERIavrrqevlryfDWYQETWLQRRPRLATQLSNieraisELQQQLARLIADTKLRRAKLEMerkASEK 853
|
250 260 270
....*....|....*....|....*....|....*...
gi 767994127 993 QQLELEEVHRRVK---TALARKEEAVSSLRTQHEVSPC 1027
Cdd:pfam12128 854 QQVRLSENLRGLRcemSKLATLKEDANSEQAQGSIGER 891
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
596-970 |
3.69e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 3.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 596 QQRDLTARRVKETEKALSR------QLQRQREHYEAtiQRHLAfiDQLIEDKKVLSEKCEAVVAELKQEDQRCTERVAQA 669
Cdd:TIGR02168 172 ERRKETERKLERTRENLDRledilnELERQLKSLER--QAEKA--ERYKELKAELRELELALLVLRLEELREELEELQEE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 670 QAQHELEIKKLKELMSATEKArrekwISEKTKKIKEVTVRglEPEIQKLIARHKQEVRRLKslHEAELLQSDERASQRCL 749
Cdd:TIGR02168 248 LKEAEEELEELTAELQELEEK-----LEELRLEVSELEEE--IEELQKELYALANEISRLE--QQKQILRERLANLERQL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 750 RQAEELREQLEREKEALgqqererarqrqRAELEELRQQLEEsssaltraLRAEFEKGREEQERRHqMELNTLKQQLELE 829
Cdd:TIGR02168 319 EELEAQLEELESKLDEL------------AEELAELEEKLEE--------LKEELESLEAELEELE-AELEELESRLEEL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 830 RQAWEagRTRKEEAWLLNREQELREEIRKGRdKEIELVIHRLEADMALAKEESEKAAESRIKRLRdkyeAELSELEQSER 909
Cdd:TIGR02168 378 EEQLE--TLRSKVAQLELQIASLNNEIERLE-ARLERLEDRRERLQQEIEELLKKLEEAELKELQ----AELEELEEELE 450
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767994127 910 KLQERCSELKGQLGEAEGEnlrlqglVRQKERALEDAQAVNEQLSSeRSNLAQVIRQEFED 970
Cdd:TIGR02168 451 ELQEELERLEEALEELREE-------LEEAEQALDAAERELAQLQA-RLDSLERLQENLEG 503
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
794-1013 |
4.16e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 4.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 794 SALTRALRAEFEKGREEQERRHQMELNTLKqqlELERQAWEAGRTRKEEAWLLNREQELREEIRkgrdkeielvihrlea 873
Cdd:COG4717 45 AMLLERLEKEADELFKPQGRKPELNLKELK---ELEEELKEAEEKEEEYAELQEELEELEEELE---------------- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 874 dmalAKEESEKAAESRIKRLRDkyEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQL 953
Cdd:COG4717 106 ----ELEAELEELREELEKLEK--LLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEEL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767994127 954 SSERSNLAQVIRQEFED---RLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEE 1013
Cdd:COG4717 180 EELLEQLSLATEEELQDlaeELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALE 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
809-1022 |
5.48e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 5.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 809 EEQERRHQMELnTLKQQLELERQAWEAG-RTRKEEAWLL---NREQ--ELREEIRkgrdkEIELVIHRLEADMALAKEES 882
Cdd:COG4913 567 PEELRRHPRAI-TRAGQVKGNGTRHEKDdRRRIRSRYVLgfdNRAKlaALEAELA-----ELEEELAEAEERLEALEAEL 640
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 883 E----------------------KAAESRIKRLRDKYEA------ELSELEQSERKLQERCSELKGQLGEAEGENLRLQg 934
Cdd:COG4913 641 DalqerrealqrlaeyswdeidvASAEREIAELEAELERldassdDLAALEEQLEELEAELEELEEELDELKGEIGRLE- 719
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 935 lvRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAAseeetrqakAELATLQARQQLELEEVHRRVKTALARKEEA 1014
Cdd:COG4913 720 --KELEQAEEELDELQDRLEAAEDLARLELRALLEERFAA---------ALGDAVERELRENLEERIDALRARLNRAEEE 788
|
....*...
gi 767994127 1015 VSSLRTQH 1022
Cdd:COG4913 789 LERAMRAF 796
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
567-887 |
5.88e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 5.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 567 SEVSTSVMRLKLEVEeKKQAMLLLQRALAQ-QRDLTARRVKETEKALSR------QLQRQREHYEATIQRHLAFIDQLIE 639
Cdd:TIGR02168 196 NELERQLKSLERQAE-KAERYKELKAELRElELALLVLRLEELREELEElqeelkEAEEELEELTAELQELEEKLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 640 DKKVLSEKCEAVVAEL---KQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQ 716
Cdd:TIGR02168 275 EVSELEEEIEELQKELyalANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 717 KLIARHKQEVRRLKSLHEAEllqsdeRASQRCLRQAEELREQLEREKEALgqqererarqrqRAELEELRQQLEESSSAL 796
Cdd:TIGR02168 355 SLEAELEELEAELEELESRL------EELEEQLETLRSKVAQLELQIASL------------NNEIERLEARLERLEDRR 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 797 TRA---LRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEEawLLNREQELREEIRKGRDKEIELV--IHRL 871
Cdd:TIGR02168 417 ERLqqeIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEE--LREELEEAEQALDAAERELAQLQarLDSL 494
|
330
....*....|....*.
gi 767994127 872 EADMALAKEESEKAAE 887
Cdd:TIGR02168 495 ERLQENLEGFSEGVKA 510
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
782-1021 |
7.80e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.87 E-value: 7.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 782 LEELRQQLEESSSAltRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRK----------EEAWLLNREQE 851
Cdd:PRK04863 357 LEELEERLEEQNEV--VEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAiqyqqavqalERAKQLCGLPD 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 852 LREE-----IRKGRDKEIELVIHRLEADMAL-----AKEESEKAAESrIKRLRDKYEAE---------LSELEqSERKLQ 912
Cdd:PRK04863 435 LTADnaedwLEEFQAKEQEATEELLSLEQKLsvaqaAHSQFEQAYQL-VRKIAGEVSRSeawdvarelLRRLR-EQRHLA 512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 913 ERCSELKGQLGEAEGEnLRLQglvRQKERALEDA-QAVNEQLSSErsnlaqvirQEFEDRLAASEEETRQAKAELATLQA 991
Cdd:PRK04863 513 EQLQQLRMRLSELEQR-LRQQ---QRAERLLAEFcKRLGKNLDDE---------DELEQLQEELEARLESLSESVSEARE 579
|
250 260 270
....*....|....*....|....*....|....*....
gi 767994127 992 RQ---QLELEEVHRRVKTALARK------EEAVSSLRTQ 1021
Cdd:PRK04863 580 RRmalRQQLEQLQARIQRLAARApawlaaQDALARLREQ 618
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
782-1023 |
8.20e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.71 E-value: 8.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 782 LEELRQQLEESSSALTRALRAEFEKGREEQERRhqMELNTLKQQLELERQAWEAgRTRKEEawllNREQELREEIRKGRD 861
Cdd:pfam01576 31 LEKKHQQLCEEKNALQEQLQAETELCAEAEEMR--ARLAARKQELEEILHELES-RLEEEE----ERSQQLQNEKKKMQQ 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 862 KEIELVIHRLEADMALAKEESEK-AAESRIKRLRDK---YEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVR 937
Cdd:pfam01576 104 HIQDLEEQLDEEEAARQKLQLEKvTTEAKIKKLEEDillLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKN 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 938 QKERALEDAQavneqlssERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARqqleLEEvhrrVKTALARKEEAVSS 1017
Cdd:pfam01576 184 KHEAMISDLE--------ERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQ----IAE----LRAQLAKKEEELQA 247
|
....*.
gi 767994127 1018 LRTQHE 1023
Cdd:pfam01576 248 ALARLE 253
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
714-970 |
9.92e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 9.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 714 EIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALgqqererarQRQRAELEELRQQLEESS 793
Cdd:COG4913 628 EAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERL---------DASSDDLAALEEQLEELE 698
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 794 SALtRALRAEFEKgREEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEA 873
Cdd:COG4913 699 AEL-EELEEELDE-LKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERID 776
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 874 DMALAKEESEKAAESRIKRLRDKYEAELSELE---QSERKLQERCSELKGQlgeaegenlrlqGLVRQKERALEdaqAVN 950
Cdd:COG4913 777 ALRARLNRAEEELERAMRAFNREWPAETADLDadlESLPEYLALLDRLEED------------GLPEYEERFKE---LLN 841
|
250 260
....*....|....*....|
gi 767994127 951 EQLSSERSNLAQVIRQEFED 970
Cdd:COG4913 842 ENSIEFVADLLSKLRRAIRE 861
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
578-1006 |
1.29e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 578 LEVEEKKQAMLLLQRALAQQRDLTARRVKE----TEKALSRQ------------LQRQREHYEATIQRHLAFID------ 635
Cdd:pfam15921 250 LKSESQNKIELLLQQHQDRIEQLISEHEVEitglTEKASSARsqansiqsqleiIQEQARNQNSMYMRQLSDLEstvsql 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 636 --QLIEDKKVLSEKCEAVVAEL----KQEDQRCTERVAQAQAQHELEiKKLKELMSATEKarREKWISEKTKKIKEVTVR 709
Cdd:pfam15921 330 rsELREAKRMYEDKIEELEKQLvlanSELTEARTERDQFSQESGNLD-DQLQKLLADLHK--REKELSLEKEQNKRLWDR 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 710 GLEPEI-----QKLIARHKQEVRRLKSLHEAelLQSDerasqrCLRQAEELREQLEREKEALGQQERERARQRQRAelEE 784
Cdd:pfam15921 407 DTGNSItidhlRRELDDRNMEVQRLEALLKA--MKSE------CQGQMERQMAAIQGKNESLEKVSSLTAQLESTK--EM 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 785 LRQQLEESSS---ALTRALR--AEFEKGREEQERRHQM---ELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEI 856
Cdd:pfam15921 477 LRKVVEELTAkkmTLESSERtvSDLTASLQEKERAIEAtnaEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQ 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 857 RKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYE-----AELSELEQSERKLQERCSELKGQLGEAEGENLR 931
Cdd:pfam15921 557 MAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEindrrLELQEFKILKDKKDAKIRELEARVSDLELEKVK 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 932 LQGLVRQKERALEDAQAVNEQLSSE----RSNLA------QVIRQEFEDRLAASEEETRQAKAELATLQArqqlELEEVH 1001
Cdd:pfam15921 637 LVNAGSERLRAVKDIKQERDQLLNEvktsRNELNslsedyEVLKRNFRNKSEEMETTTNKLKMQLKSAQS----ELEQTR 712
|
....*
gi 767994127 1002 RRVKT 1006
Cdd:pfam15921 713 NTLKS 717
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
862-964 |
1.45e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 45.84 E-value: 1.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 862 KEIELVIHRLEADMALAKEESEKAAESRIKRLRDKY---EAELSELE---QSERKLQERCSELKGQLGEAEGENLRLQGL 935
Cdd:COG0542 414 DELERRLEQLEIEKEALKKEQDEASFERLAELRDELaelEEELEALKarwEAEKELIEEIQELKEELEQRYGKIPELEKE 493
|
90 100 110
....*....|....*....|....*....|
gi 767994127 936 VRQKERALEDAQA-VNEQLSSErsNLAQVI 964
Cdd:COG0542 494 LAELEEELAELAPlLREEVTEE--DIAEVV 521
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
577-994 |
1.48e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.19 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 577 KLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLqrqrehyeATIQRHLAFIDQLIEDKKVLSEKCEAVVAELK 656
Cdd:TIGR00606 616 SKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQR--------AMLAGATAVYSQFITQLTDENQSCCPVCQRVF 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 657 QEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREK------------WISEKTKKIKEV--TVRGLEPEIQKLIARH 722
Cdd:TIGR00606 688 QTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRdemlglapgrqsIIDLKEKEIPELrnKLQKVNRDIQRLKNDI 767
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 723 KQEVRRLKS----LHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALTr 798
Cdd:TIGR00606 768 EEQETLLGTimpeEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIE- 846
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 799 aLRAEFEKGREEQERRHQMELNTLK-QQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELV-----IHRLE 872
Cdd:TIGR00606 847 -LNRKLIQDQQEQIQHLKSKTNELKsEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLEtflekDQQEK 925
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 873 ADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSE-LKGQLGEAEGENLRLQGLVRQKERALED----AQ 947
Cdd:TIGR00606 926 EELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDyLKQKETELNTVNAQLEECEKHQEKINEDmrlmRQ 1005
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 767994127 948 AVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQ 994
Cdd:TIGR00606 1006 DIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQM 1052
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
575-911 |
1.81e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.70 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 575 RLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSR-----QLQRQREHYEATIQRHLA---------FIDQLIED 640
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARlllllEAEADYEGFLEGVKAALLlaglrglagAVAVLIGV 532
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 641 KKVLSEKCEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARRekwiSEKTKKIKEVTVRGLEPEIQKLIA 720
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRA----RAALAAALARGAIGAAVDLVASDL 608
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 721 RHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALTRAL 800
Cdd:COG1196 609 READARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERL 688
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 801 RAEFEKGREEQERRHQMELNTLKQQLELERQaweagrtrkeeawllnREQELREEIRKGRDKEIELVIHRLEADMALAKE 880
Cdd:COG1196 689 AEEELELEEALLAEEEEERELAEAEEERLEE----------------ELEEEALEEQLEAEREELLEELLEEEELLEEEA 752
|
330 340 350
....*....|....*....|....*....|.
gi 767994127 881 ESEKAAESRikrlRDKYEAELSELEQSERKL 911
Cdd:COG1196 753 LEELPEPPD----LEELERELERLEREIEAL 779
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
635-960 |
2.19e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.55 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 635 DQLIEDKKVLSEKCEAVVAELKQEDQRCTERVAqAQAQHELEIKKLKELMSATEKARRE--KWISEKTKKIKEVtVRGLE 712
Cdd:pfam01576 738 EQGEEKRRQLVKQVRELEAELEDERKQRAQAVA-AKKKLELDLKELEAQIDAANKGREEavKQLKKLQAQMKDL-QRELE 815
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 713 PEIQ---KLIARHKQEVRRLKSLhEAELLQSDER--ASQRCLRQAEELREQLER--EKEALGQQERERARQRQRAELEEL 785
Cdd:pfam01576 816 EARAsrdEILAQSKESEKKLKNL-EAELLQLQEDlaASERARRQAQQERDELADeiASGASGKSALQDEKRRLEARIAQL 894
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 786 RQQLEESSSALtralraefeKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELR-EEIRKGRDKEI 864
Cdd:pfam01576 895 EEELEEEQSNT---------ELLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKlQEMEGTVKSKF 965
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 865 ELVIHRLEADMA-----LAKEESEKAAESRIKRLRDKYEAELSELEQSER-----------KLQERCSELKGQLGEAEGE 928
Cdd:pfam01576 966 KSSIAALEAKIAqleeqLEQESRERQAANKLVRRTEKKLKEVLLQVEDERrhadqykdqaeKGNSRMKQLKRQLEEAEEE 1045
|
330 340 350
....*....|....*....|....*....|..
gi 767994127 929 NLRLQGLVRQKERALEDAQAVNEQLSSERSNL 960
Cdd:pfam01576 1046 ASRANAARRKLQRELDDATESNESMNREVSTL 1077
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
782-1019 |
2.27e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.55 E-value: 2.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 782 LEELRQQLEESSSALTRAlraefekgrEEQERRHQMELNTLKQQLELERQAWEAGRTRK--------EEAWLLNREQELR 853
Cdd:pfam01576 554 LEALTQQLEEKAAAYDKL---------EKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQkkfdqmlaEEKAISARYAEER 624
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 854 EEI-RKGRDKEIE-LVIHRLEADMALAKEESEKAAesriKRLRDKYEAELS----------ELEQSERKLQERCSELKGQ 921
Cdd:pfam01576 625 DRAeAEAREKETRaLSLARALEEALEAKEELERTN----KQLRAEMEDLVSskddvgknvhELERSKRALEQQVEEMKTQ 700
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 922 LGEAEGE-------NLRL----QGLVRQKERaleDAQAVNEQLSSERSNLAQVIRqEFEDRLaaseEETRQAKAELATLQ 990
Cdd:pfam01576 701 LEELEDElqatedaKLRLevnmQALKAQFER---DLQARDEQGEEKRRQLVKQVR-ELEAEL----EDERKQRAQAVAAK 772
|
250 260
....*....|....*....|....*....
gi 767994127 991 ARQQLELEEVHRRVKTALARKEEAVSSLR 1019
Cdd:pfam01576 773 KKLELDLKELEAQIDAANKGREEAVKQLK 801
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
578-941 |
3.09e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 3.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 578 LEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALS------RQLQRQREhyeaTIQRHLAFIDQLIEDKKVLSEKCEAV 651
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSdasrkiGEIEKEIE----QLEQEEEKLKERLEELEEDLSSLEQE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 652 VAELKQEDQRCTERVaqaqAQHELEIKKLKELMSATEKARREKWISEKTKKIKEvtvrgLEPEIQKLIARHKQEVRRLKS 731
Cdd:TIGR02169 753 IENVKSELKELEARI----EELEEDLHKLEEALNDLEARLSHSRIPEIQAELSK-----LEEEVSRIEARLREIEQKLNR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 732 LHEAELLQSDERASQRCLRQAEELREQLEREKEALGqqererarqrqRAELEELRQQLEESSSALtRALRAEFeKGREEQ 811
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL-----------NGKKEELEEELEELEAAL-RDLESRL-GDLKKE 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 812 ERRHQMELNTLKQqlELERQAWEAGRTRKEEAWLLNREQELREEIrkgrdKEIELVIHRLEadmalaKEESEKAAESRIK 891
Cdd:TIGR02169 891 RDELEAQLRELER--KIEELEAQIEKKRKRLSELKAKLEALEEEL-----SEIEDPKGEDE------EIPEEELSLEDVQ 957
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 767994127 892 RLRDKYEAELSELE-------QSERKLQERCSELKGQLGEAEGENLRLQGLVRQKER 941
Cdd:TIGR02169 958 AELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEK 1014
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
603-1024 |
3.58e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.65 E-value: 3.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 603 RRVKETEKALSRQLQRQREHYEATIQRHlafIDQLIEDKKVLSEKCEAVVAELKQEDQRCTERVAQAQaQHELEIKKLKE 682
Cdd:TIGR00606 400 IERQEDEAKTAAQLCADLQSKERLKQEQ---ADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQ-QLEGSSDRILE 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 683 LMSATEKARREKWISEK-----TKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSlHEAELLQSDERASQRCLRQAEELRE 757
Cdd:TIGR00606 476 LDQELRKAERELSKAEKnslteTLKKEVKSLQNEKADLDRKLRKLDQEMEQLNH-HTTTRTQMEMLTKDKMDKDEQIRKI 554
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 758 QLEREKEALGQQERERARQRQRAELEELRQQLEESSSALtRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGR 837
Cdd:TIGR00606 555 KSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRL-AKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCG 633
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 838 TRKEEAWLLNreqeLREEIRKGR-------------DKEIELVIHRLEADMALAKE--ESEKAAESRIKRLRDKYEAELS 902
Cdd:TIGR00606 634 SQDEESDLER----LKEEIEKSSkqramlagatavySQFITQLTDENQSCCPVCQRvfQTEAELQEFISDLQSKLRLAPD 709
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 903 ELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQvirQEFEDRLAASEEETRQA 982
Cdd:TIGR00606 710 KLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEE---QETLLGTIMPEEESAKV 786
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 767994127 983 KAELATLQARQQLELEEVHRRVKTaLARKEEAVSSLRTQHEV 1024
Cdd:TIGR00606 787 CLTDVTIMERFQMELKDVERKIAQ-QAAKLQGSDLDRTVQQV 827
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
567-1023 |
3.80e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 3.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 567 SEVSTSVMRLKLEVEEKKQAMLLLQ-RALAQQRDLTARRVKETEKAlSRQLQRQREHYEATIQRHlAFIDQLIEDKKVLS 645
Cdd:PRK02224 183 SDQRGSLDQLKAQIEEKEEKDLHERlNGLESELAELDEEIERYEEQ-REQARETRDEADEVLEEH-EERREELETLEAEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 646 EKCEAVVAELKQEDQRCTERVAQAQAQHEleikklkELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKLiARHKQE 725
Cdd:PRK02224 261 EDLRETIAETEREREELAEEVRDLRERLE-------ELEEERDDLLAEAGLDDADAEAVEARREELEDRDEEL-RDRLEE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 726 VRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEAlgqQERERARQRQRAELEELRQQLEESSSALTRA------ 799
Cdd:PRK02224 333 CRVAAQAHNEEAESLREDADDLEERAEELREEAAELESEL---EEAREAVEDRREEIEELEEEIEELRERFGDApvdlgn 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 800 LRAEFEKGREEQERRHQmELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAK 879
Cdd:PRK02224 410 AEDFLEELREERDELRE-REAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLE 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 880 EESE------------KAAESRIKRLRDKYEAELSELEQSERKL---QERCSELKGQLGEAEGENLRLQGLVRQKERALE 944
Cdd:PRK02224 489 EEVEeveerleraedlVEAEDRIERLEERREDLEELIAERRETIeekRERAEELRERAAELEAEAEEKREAAAEAEEEAE 568
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767994127 945 DAQAVNEQLSSERSNLAQviRQEFEDRLAASEEETRQAKAELATLQARQQlELEEVHRRVKTALARKEEAVSSLRTQHE 1023
Cdd:PRK02224 569 EAREEVAELNSKLAELKE--RIESLERIRTLLAAIADAEDEIERLREKRE-ALAELNDERRERLAEKRERKRELEAEFD 644
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
889-1018 |
4.49e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.99 E-value: 4.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 889 RIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALE-------------DAQAVN---EQ 952
Cdd:COG1579 21 RLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKkyeeqlgnvrnnkEYEALQkeiES 100
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767994127 953 LSSERSNLAQVIRQ------EFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSL 1018
Cdd:COG1579 101 LKRRISDLEDEILElmerieELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
852-1011 |
5.12e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 43.42 E-value: 5.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 852 LREEIrKGRDKEIELVIHRLeADMA--LAKEESEKAA-ESRIKRLRdkyeAELSELEqSERklqercSELKGQLGEAEGE 928
Cdd:PRK09039 44 LSREI-SGKDSALDRLNSQI-AELAdlLSLERQGNQDlQDSVANLR----ASLSAAE-AER------SRLQALLAELAGA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 929 NLRLQGLVRQKERALEDAQAV-----------NEQLSSERSNLAQVirqefEDRLAASEEETRQAKAELATLQarqqlel 997
Cdd:PRK09039 111 GAAAEGRAGELAQELDSEKQVsaralaqvellNQQIAALRRQLAAL-----EAALDASEKRDRESQAKIADLG------- 178
|
170
....*....|....
gi 767994127 998 eevhRRVKTALARK 1011
Cdd:PRK09039 179 ----RRLNVALAQR 188
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
725-1014 |
6.14e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.81 E-value: 6.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 725 EVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALTRALRAEF 804
Cdd:pfam02463 152 PERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDY 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 805 EKGREEQERRHQMELNTLKQQLELERQaweagRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEadmalakEESEK 884
Cdd:pfam02463 232 LKLNEERIDLLQELLRDEQEEIESSKQ-----EIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKE-------EEELK 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 885 AAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVI 964
Cdd:pfam02463 300 SELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKK 379
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 767994127 965 RQEFEDRLAAsEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEA 1014
Cdd:pfam02463 380 KLESERLSSA-AKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEE 428
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
819-1025 |
1.03e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 819 LNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRkgrDKEIELVIHRLEADMALAKEESeKAAESRIKRLrdkyE 898
Cdd:COG3206 154 ANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELE---EAEAALEEFRQKNGLVDLSEEA-KLLLQQLSEL----E 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 899 AELSELEQSERKLQERCSELKGQLGEAEGENLRLQG--LVRQKERALEDAQAVNEQLSS--------------ERSNLAQ 962
Cdd:COG3206 226 SQLAEARAELAEAEARLAALRAQLGSGPDALPELLQspVIQQLRAQLAELEAELAELSArytpnhpdvialraQIAALRA 305
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767994127 963 VIRQEFEDRLAASEEETRQAKAELATLQArqqlELEEVHRRVKTaLARKEEAVSSLRTQHEVS 1025
Cdd:COG3206 306 QLQQEAQRILASLEAELEALQAREASLQA----QLAQLEARLAE-LPELEAELRRLEREVEVA 363
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
677-997 |
1.08e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.14 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 677 IKKLKELMSATEK----ARREKWISEKTKKIKevtvrglepeiQKLIARHKQEVRRlkSLHEAELLQSDERASQRCLRQa 752
Cdd:COG5022 796 FIKLQPLLSLLGSrkeyRSYLACIIKLQKTIK-----------REKKLRETEEVEF--SLKAEVLIQKFGRSLKAKKRF- 861
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 753 eelreqLEREKEALgqqereraRQRQRAELEELRQQLEEsssaltralraefekgrEEQERRhqmELNTLKQQ-LELErq 831
Cdd:COG5022 862 ------SLLKKETI--------YLQSAQRVELAERQLQE-----------------LKIDVK---SISSLKLVnLELE-- 905
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 832 aWEAGRTRKEEAWLLNREQELREEirkgRDKEIELVIHRLEADMALAKEESEK-------AAESRIKRLRDKYEAELSEL 904
Cdd:COG5022 906 -SEIIELKKSLSSDLIENLEFKTE----LIARLKKLLNNIDLEEGPSIEYVKLpelnklhEVESKLKETSEEYEDLLKKS 980
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 905 EQSERKLQERCSELKG---QLGEAEGENLRLQ---GLVRQKERALEDAQAVNEQLSSERSNLAQviRQEFEDRLAASEEE 978
Cdd:COG5022 981 TILVREGNKANSELKNfkkELAELSKQYGALQestKQLKELPVEVAELQSASKIISSESTELSI--LKPLQKLKGLLLLE 1058
|
330
....*....|....*....
gi 767994127 979 TRQAKAELATLQARQQLEL 997
Cdd:COG5022 1059 NNQLQARYKALKLRRENSL 1077
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
782-1025 |
1.09e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.96 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 782 LEELRQQLEESSSALTRALRAEFEKGREEQERRHQMEL----NTLKQQLELERQAWEAGRTR--KEEAWLLNREQELREE 855
Cdd:pfam07888 9 LEEESHGEEGGTDMLLVVPRAELLQNRLEECLQERAELlqaqEAANRQREKEKERYKRDREQweRQRRELESRVAELKEE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 856 IRKGRDKEIELVIHRLEADMALAKEESEKAAESRIkrlRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGL 935
Cdd:pfam07888 89 LRQSREKHEELEEKYKELSASSEELSEEKDALLAQ---RAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQ 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 936 VRQKERALEDAQAVNEQLSSERSNLAQVIrQEFEDRLAASEEETRQAKAELATLQARqqleLEEVHRRVKTALARKEEaV 1015
Cdd:pfam07888 166 RKEEEAERKQLQAKLQQTEEELRSLSKEF-QELRNSLAQRDTQVLQLQDTITTLTQK----LTTAHRKEAENEALLEE-L 239
|
250
....*....|
gi 767994127 1016 SSLRTQHEVS 1025
Cdd:pfam07888 240 RSLQERLNAS 249
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
528-999 |
1.11e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.03 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 528 KLQSIMSFLDEMEKSGQDQLDSQQEgwvpEAGPGPLELGSEVSTSVMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKE 607
Cdd:TIGR00618 383 TLQQQKTTLTQKLQSLCKELDILQR----EQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEK 458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 608 TEKALSRQLQRQREHYEATIQR-----------HLAFIDQLIEDKKVLSEKC-----EAVVAELKQEDQRCTERVAQAQA 671
Cdd:TIGR00618 459 IHLQESAQSLKEREQQLQTKEQihlqetrkkavVLARLLELQEEPCPLCGSCihpnpARQDIDNPGPLTRRMQRGEQTYA 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 672 QHELEIKKLK-ELMSATEKARREKW--------ISEKTKKIKEVT-----VRGLEPEIQKLIARHKQEVRRLKSLHEAEL 737
Cdd:TIGR00618 539 QLETSEEDVYhQLTSERKQRASLKEqmqeiqqsFSILTQCDNRSKedipnLQNITVRLQDLTEKLSEAEDMLACEQHALL 618
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 738 LQSDERASQRCLRQAEELREQLEREKE-ALGQQERERArqrqraeleelrQQLEESSSALTRALRAEFEKGREEQERRHQ 816
Cdd:TIGR00618 619 RKLQPEQDLQDVRLHLQQCSQELALKLtALHALQLTLT------------QERVREHALSIRVLPKELLASRQLALQKMQ 686
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 817 MELNTLKQQLELERQAWEAGR---TRKEEAWLLNREQELREEIRK----GRDKEIELVIHRLEADMALAKEESEKAAESR 889
Cdd:TIGR00618 687 SEKEQLTYWKEMLAQCQTLLReleTHIEEYDREFNEIENASSSLGsdlaAREDALNQSLKELMHQARTVLKARTEAHFNN 766
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 890 IKRL--RDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLR-----LQGLVRQKERALEDAQAVNEQLSSERSNLAQ 962
Cdd:TIGR00618 767 NEEVtaALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQeipsdEDILNLQCETLVQEEEQFLSRLEEKSATLGE 846
|
490 500 510
....*....|....*....|....*....|....*..
gi 767994127 963 VIRQEFEDrlaaseEETRQAKAELATLQARQQLELEE 999
Cdd:TIGR00618 847 ITHQLLKY------EECSKQLAQLTQEQAKIIQLSDK 877
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
782-1027 |
1.20e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 782 LEELRQQLEESSSALTRAlraefekgrEEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAwLLNREQELREEIRKGRD 861
Cdd:PRK04863 839 LRQLNRRRVELERALADH---------ESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADET-LADRVEEIREQLDEAEE 908
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 862 KEIELVIH-----RLEADMALAKEESEK---------AAESRIKRLRDKYEAeLSEL---------EQSERKL---QERC 915
Cdd:PRK04863 909 AKRFVQQHgnalaQLEPIVSVLQSDPEQfeqlkqdyqQAQQTQRDAKQQAFA-LTEVvqrrahfsyEDAAEMLaknSDLN 987
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 916 SELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQvIRQEF---------------EDRLAASEEE-- 978
Cdd:PRK04863 988 EKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQ-MLQELkqelqdlgvpadsgaEERARARRDElh 1066
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 767994127 979 -----TRQAKAELATLQARQQLELEEVHRRVKtALARKEEAVSSLRTQHEVSPC 1027
Cdd:PRK04863 1067 arlsaNRSRRNQLEKQLTFCEAEMDNLTKKLR-KLERDYHEMREQVVNAKAGWC 1119
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
735-1002 |
1.59e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.19 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 735 AELLQSderASQRCLRQAEELREQLEREKEalGQQERERARQRQRAELEELRQQLEESSSALTRALRAEFEKGREEQERr 814
Cdd:pfam07888 29 AELLQN---RLEECLQERAELLQAQEAANR--QREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEK- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 815 hQMELNTLKQQLELERQAWEAGRTRKEeAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAesrikrlR 894
Cdd:pfam07888 103 -YKELSASSEELSEEKDALLAQRAAHE-ARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAE-------R 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 895 DKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQ---AVNEQLSSERSNLaqvirqefEDR 971
Cdd:pfam07888 174 KQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHrkeAENEALLEELRSL--------QER 245
|
250 260 270
....*....|....*....|....*....|.
gi 767994127 972 LAASEEETRQAKAELATLQARQQLELEEVHR 1002
Cdd:pfam07888 246 LNASERKVEGLGEELSSMAAQRDRTQAELHQ 276
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
862-1014 |
1.89e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 862 KEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAEL----SELEQSERKLQERCSELKGQLGEAEGENLRLQglvr 937
Cdd:PRK12704 38 EEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELrerrNELQKLEKRLLQKEENLDRKLELLEKREEELE---- 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 938 QKERALEDAQAVNEQLSSERSNLAQVIRQEFEdRLAA-SEEEtrqakaelatlqARQQLeLEEVHRRVKTALAR------ 1010
Cdd:PRK12704 114 KKEKELEQKQQELEKKEEELEELIEEQLQELE-RISGlTAEE------------AKEIL-LEKVEEEARHEAAVlikeie 179
|
....*..
gi 767994127 1011 ---KEEA 1014
Cdd:PRK12704 180 eeaKEEA 186
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
890-1015 |
3.00e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.74 E-value: 3.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 890 IKRLRDKYEAELSELEQSERKLQErcselkgQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFE 969
Cdd:PRK00409 504 IEEAKKLIGEDKEKLNELIASLEE-------LERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQ 576
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 767994127 970 DRLAASEEETRQAKAELATLQARQQL-----ELEEVHRRVKTALARKEEAV 1015
Cdd:PRK00409 577 QAIKEAKKEADEIIKELRQLQKGGYAsvkahELIEARKRLNKANEKKEKKK 627
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
850-987 |
3.11e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 3.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 850 QELREEIRKGRDKEIELVIHRLEADMALAKEESE-KAAESRIKRLRDK---------YEA----------ELSELEQSER 909
Cdd:COG1579 34 AELEDELAALEARLEAAKTELEDLEKEIKRLELEiEEVEARIKKYEEQlgnvrnnkeYEAlqkeieslkrRISDLEDEIL 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767994127 910 KLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELA 987
Cdd:COG1579 114 ELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPELLALYERIRKRKNGLA 191
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
611-705 |
3.40e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.35 E-value: 3.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 611 ALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAELKQEDQrctERVAQAQAQHELEIKKLKELMSATEKA 690
Cdd:PRK00409 527 ELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQ---QAIKEAKKEADEIIKELRQLQKGGYAS 603
|
90
....*....|....*
gi 767994127 691 RREKWISEKTKKIKE 705
Cdd:PRK00409 604 VKAHELIEARKRLNK 618
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
892-1009 |
4.23e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 4.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 892 RLRDKYEAELSELEQSERkLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQ----- 966
Cdd:TIGR02169 661 APRGGILFSRSEPAELQR-LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKlkerl 739
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 767994127 967 -EFEDRLAASEEETRQAKAELATLQARQQlELEEVHRRVKTALA 1009
Cdd:TIGR02169 740 eELEEDLSSLEQEIENVKSELKELEARIE-ELEEDLHKLEEALN 782
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
572-913 |
4.34e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.20 E-value: 4.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 572 SVMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSE---KC 648
Cdd:TIGR02168 729 SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREaldEL 808
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 649 EAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELmsatekarrekwiSEKTKKIKEvtvrglepEIQKLIARHKQEVRR 728
Cdd:TIGR02168 809 RAELTLLNEEAANLRERLESLERRIAATERRLEDL-------------EEQIEELSE--------DIESLAAEIEELEEL 867
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 729 LKSLHEAELLQSDERASQRCLRQAeelreqlerekealgqqererarqrQRAELEELRQQLEESSSALtRALRAEFEKGR 808
Cdd:TIGR02168 868 IEELESELEALLNERASLEEALAL-------------------------LRSELEELSEELRELESKR-SELRRELEELR 921
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 809 EEQErRHQMELNTLKQQL-ELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAE 887
Cdd:TIGR02168 922 EKLA-QLELRLEGLEVRIdNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKE 1000
|
330 340
....*....|....*....|....*.
gi 767994127 888 SrikrlRDKYEAELSELEQSERKLQE 913
Cdd:TIGR02168 1001 R-----YDFLTAQKEDLTEAKETLEE 1021
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
814-1003 |
4.68e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 4.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 814 RHQMELNTLKQQ-LELERQAWEAGRTRKEEAwllNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKR 892
Cdd:COG3096 275 RHANERRELSERaLELRRELFGARRQLAEEQ---YRLVEMARELEELSARESDLEQDYQAASDHLNLVQTALRQQEKIER 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 893 lrdkYEAELSEL-----EQSE--RKLQERCSELKGQLGEAEGENLRL--------QGLVRQKERALEDAQAVNE-QLSSE 956
Cdd:COG3096 352 ----YQEDLEELterleEQEEvvEEAAEQLAEAEARLEAAEEEVDSLksqladyqQALDVQQTRAIQYQQAVQAlEKARA 427
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 767994127 957 RSNLAQVIRQEFEDRLAASEEETRQAKAELatLQARQQLELEEVHRR 1003
Cdd:COG3096 428 LCGLPDLTPENAEDYLAAFRAKEQQATEEV--LELEQKLSVADAARR 472
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
573-998 |
4.82e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 40.86 E-value: 4.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 573 VMRLKLEVEEKKQAMLLLQRALAQQRDlTARRVKETEKALSRQLQ----------RQREHYEATIQRHLAFIDQLIEDKK 642
Cdd:pfam05483 242 VSLLLIQITEKENKMKDLTFLLEESRD-KANQLEEKTKLQDENLKeliekkdhltKELEDIKMSLQRSMSTQKALEEDLQ 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 643 VLSEkceaVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKwisEKTKKIKEVTVRGLEPEIQKLiARH 722
Cdd:pfam05483 321 IATK----TICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTE---QQRLEKNEDQLKIITMELQKK-SSE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 723 KQEVRRLKSLHEAELlqsderasqrclrqaeelreqlerekealgqqererarqrqraelEELRQQLEESSSALTRalRA 802
Cdd:pfam05483 393 LEEMTKFKNNKEVEL---------------------------------------------EELKKILAEDEKLLDE--KK 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 803 EFEKGREEQERRHQmELNTLKQQLELERQAWEAGRT--RKEEAWLLNREQELREEIRKGRDKEIELVIH----------- 869
Cdd:pfam05483 426 QFEKIAEELKGKEQ-ELIFLLQAREKEIHDLEIQLTaiKTSEEHYLKEVEDLKTELEKEKLKNIELTAHcdklllenkel 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 870 -RLEADMALA-KEESE------KAAESRIKRLRDKYEAELS---ELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQ 938
Cdd:pfam05483 505 tQEASDMTLElKKHQEdiinckKQEERMLKQIENLEEKEMNlrdELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLK 584
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 939 KERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELE 998
Cdd:pfam05483 585 KEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELE 644
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
604-913 |
5.67e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.88 E-value: 5.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 604 RVKETEKALSRQLQRQREHYEATIQRHLAFidqliedkkvlsEKCEAVVAE---LKQEDQRCTERVAQAQAQHELEIKKL 680
Cdd:pfam17380 300 RLRQEKEEKAREVERRRKLEEAEKARQAEM------------DRQAAIYAEqerMAMERERELERIRQEERKRELERIRQ 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 681 KELMSATEKARR-EKWISEKTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQaEELREQL 759
Cdd:pfam17380 368 EEIAMEISRMRElERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRR-LEEERAR 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 760 EREKEALGQQERERArqrqraeLEELRQQLEESssaltRALRAEFEKGREEQERRHQMELNTLKQQLELERQAW-EAGRT 838
Cdd:pfam17380 447 EMERVRLEEQERQQQ-------VERLRQQEEER-----KRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMiEEERK 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 839 RK------EEAWLLNREQELREEIRKGRDKEIELVIHR-LEADMALAKEEsekaaESRIKRLRDKYEAeLSELEQSERKL 911
Cdd:pfam17380 515 RKllekemEERQKAIYEEERRREAEEERRKQQEMEERRrIQEQMRKATEE-----RSRLEAMEREREM-MRQIVESEKAR 588
|
..
gi 767994127 912 QE 913
Cdd:pfam17380 589 AE 590
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
581-1024 |
5.80e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.72 E-value: 5.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 581 EEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYeATIQRHLAFIDQLIEDKKVLSEKCEAVVAELKQEDQ 660
Cdd:TIGR00618 253 EEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPL-AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRA 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 661 RCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKLIARHK-QEVRRLKSLHEAELLQ 739
Cdd:TIGR00618 332 AHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKlQSLCKELDILQREQAT 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 740 SDER-ASQRCLRQ------AEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALtralrAEFEKGREEQE 812
Cdd:TIGR00618 412 IDTRtSAFRDLQGqlahakKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQL-----QTKEQIHLQET 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 813 RRHQMELNTLKQQLELER--------------QAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEADmalA 878
Cdd:TIGR00618 487 RKKAVVLARLLELQEEPCplcgscihpnparqDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLK---E 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 879 KEESEKAAESRIKRLRDKYEAELSELEQSERKLQ---ERCSELKGQLGEAEGENLR-LQGLVRQKERALEDAQaVNEQLS 954
Cdd:TIGR00618 564 QMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQdltEKLSEAEDMLACEQHALLRkLQPEQDLQDVRLHLQQ-CSQELA 642
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 955 SERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQHEV 1024
Cdd:TIGR00618 643 LKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETH 712
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
573-1023 |
6.35e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.80 E-value: 6.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 573 VMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQR-QREHYEATIQRHLAFIDQLIEDKKVLSEKCEAV 651
Cdd:TIGR00606 441 TIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERElSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKL 520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 652 VAELKQEDQRCTER-----VAQAQAQHELEIKKLK-----ELMSAT----EKARREKWISEKTKKIK--EVTVRGLEPEI 715
Cdd:TIGR00606 521 DQEMEQLNHHTTTRtqmemLTKDKMDKDEQIRKIKsrhsdELTSLLgyfpNKKQLEDWLHSKSKEINqtRDRLAKLNKEL 600
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 716 QKLIARHKQEVRRLKSLhEAELLQSDERASQRCLRQAeELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSA 795
Cdd:TIGR00606 601 ASLEQNKNHINNELESK-EEQLSSYEDKLFDVCGSQD-EESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQS 678
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 796 LTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNReQELREEIRKGRDKEIELVIHRLEA-- 873
Cdd:TIGR00606 679 CCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGL-APGRQSIIDLKEKEIPELRNKLQKvn 757
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 874 -DMALAK---EESEKAAESRIKRLR--DKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQglVRQKERALEDAQ 947
Cdd:TIGR00606 758 rDIQRLKndiEEQETLLGTIMPEEEsaKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRT--VQQVNQEKQEKQ 835
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 948 AVNEQLSSERSNLAQVI--RQEFEDRLAASEEETRQAKAELAT-LQARQQLE--LEEVHRRVK---TALARKEEAVSSLR 1019
Cdd:TIGR00606 836 HELDTVVSKIELNRKLIqdQQEQIQHLKSKTNELKSEKLQIGTnLQRRQQFEeqLVELSTEVQsliREIKDAKEQDSPLE 915
|
....
gi 767994127 1020 TQHE 1023
Cdd:TIGR00606 916 TFLE 919
|
|
| PHA03252 |
PHA03252 |
DNA packaging tegument protein UL25; Provisional |
865-976 |
7.58e-03 |
|
DNA packaging tegument protein UL25; Provisional
Pssm-ID: 223024 Cd Length: 589 Bit Score: 40.08 E-value: 7.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 865 ELVIHRLEADMALA-KEESEKAAESRIKRLRDKyeaelSELEQSERKLQERCSELKGQLGEAegENLRLQGLVRQKERAL 943
Cdd:PHA03252 28 EEDLRRLRDDSALRlRRYREDLLRDRLLRRRLG-----EELDDLQKRLQTECEDLRSRVSEA--EALLLHDASGGEGGGA 100
|
90 100 110
....*....|....*....|....*....|...
gi 767994127 944 EDAQAVNEQLSSERSNLAQVIRQEFEDRLAASE 976
Cdd:PHA03252 101 TNGGEVNVDGGADRTWLAQSPERPADGGPSGER 133
|
|
| DUF4686 |
pfam15742 |
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins ... |
784-922 |
9.09e-03 |
|
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins in this family are typically between 498 and 775 amino acids in length. There is a conserved DLK sequence motif.
Pssm-ID: 464838 [Multi-domain] Cd Length: 384 Bit Score: 39.66 E-value: 9.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994127 784 ELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQaweagrTRKeeawLLN-REQELREEIRKGRDK 862
Cdd:pfam15742 132 ELQQKLEHAHKVCLTDTCILEKKQLEERIKEASENEAKLKQQYQEEQQ------KRK----LLDqNVNELQQQVRSLQDK 201
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767994127 863 EIELVI------HRLEADMALAKE-ESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQL 922
Cdd:pfam15742 202 EAQLEMtnsqqqLRIQQQEAQLKQlENEKRKSDEHLKSNQELSEKLSSLQQEKEALQEELQQVLKQL 268
|
|
| |
