|
Name |
Accession |
Description |
Interval |
E-value |
| Rad51C |
cd19492 |
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
1-214 |
1.29e-103 |
|
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51C, together with the other RAD51 paralogs, RAD51B, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Additionally, RAD51C acts as a mediator in the early steps of DNA damage signaling.
Pssm-ID: 410900 [Multi-domain] Cd Length: 172 Bit Score: 297.98 E-value: 1.29e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 1 MKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFmvdrvvdlataciqhlqliaekhkgeehrkale 80
Cdd:cd19492 1 GKITEICGVPGVGKTQLCMQLAVNVQIPKCFGGLAGEAIYIDTEGSF--------------------------------- 47
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 81 dftldnilsHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHR 160
Cdd:cd19492 48 ---------NIHYFRVHDYVELLALINSLPKFLEDHPKVKLIVVDSIAFPFRHDFDDLAQRTRLLNGLAQLLHSLARQHN 118
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 578831213 161 LAVILTNQMTTKIDRN-QALLVPALGESWGHAATIRLIFHWDRKQsRLATLYKSP 214
Cdd:cd19492 119 LAVVLTNQVTTKISEDgQSQLVPALGESWSHACTTRLFLTWDEKQ-RFAHLYKSP 172
|
|
| Rad51 |
pfam08423 |
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
1-232 |
5.14e-38 |
|
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.
Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 133.58 E-value: 5.14e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 1 MKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDlataciqhlqlIAEKHK--GEEhrka 78
Cdd:pfam08423 37 GSITEIFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEGTFRPERLVA-----------IAERYGldPED---- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 79 ledfTLDNILShiyyfrCRDYT-----ELLAQvylLPDFLSEhSKVRLVIVDGIAFPFRHD---LDDLSLRTRLLNGLAQ 150
Cdd:pfam08423 102 ----VLDNVAY------ARAYNsehqmQLLQQ---AAAMMSE-SRFALLIVDSATALYRTDfsgRGELAERQQHLAKFLR 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 151 QMISLANNHRLAVILTNQMTTKIDRNQALLV-----PALGESWGHAATIRLIFHWDRKQSRLATLYKSPSQKECTVLFQI 225
Cdd:pfam08423 168 TLQRLADEFGVAVVITNQVVAQVDGAAGMFSgdpkkPIGGHIMAHASTTRLSLRKGRGEQRICKIYDSPCLPESEAVFAI 247
|
....*..
gi 578831213 226 KPQGFRD 232
Cdd:pfam08423 248 GSGGIID 254
|
|
| recomb_radA |
TIGR02236 |
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA ... |
4-232 |
1.48e-33 |
|
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 131290 [Multi-domain] Cd Length: 310 Bit Score: 123.70 E-value: 1.48e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 4 TEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLAtaciqhlqliaekhkgeEHRKALEDFT 83
Cdd:TIGR02236 98 TEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMA-----------------EARGLDPDEV 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 84 LDNilshIYYFRCRDYTELLAQVYLLPDFLSEHSK-VRLVIVDGIAFPFRHDL---DDLSLRTRLLNGLAQQMISLANNH 159
Cdd:TIGR02236 161 LKN----IYVARAYNSNHQMLLVEKAEDLIKELNNpVKLLIVDSLTSHFRAEYvgrGALAERQQKLNKHLHDLLRLADLY 236
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 578831213 160 RLAVILTNQMTTKIDrnqAL----LVPALGESWGHAATIRLIFHWDRKQSRLATLYKSPSQKECTVLFQIKPQGFRD 232
Cdd:TIGR02236 237 NAAVVVTNQVMARPD---AFfgdpTRPIGGHILGHAATFRVYLRKGKGDKRIARLVDSPHLPEGEAVFRITEKGIED 310
|
|
| radA |
PRK04301 |
DNA repair and recombination protein RadA; Validated |
4-232 |
2.06e-32 |
|
DNA repair and recombination protein RadA; Validated
Pssm-ID: 235273 [Multi-domain] Cd Length: 317 Bit Score: 120.75 E-value: 2.06e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 4 TEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLAtaciqhlqliaekhkgeEHRKALEDFT 83
Cdd:PRK04301 105 TEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMA-----------------EALGLDPDEV 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 84 LDNilshIYYFRCR--DYTELLAQVylLPDFLSEHSKVRLVIVDGIAFPFRHD---LDDLSLRTRLLNGLAQQMISLANN 158
Cdd:PRK04301 168 LDN----IHVARAYnsDHQMLLAEK--AEELIKEGENIKLVIVDSLTAHFRAEyvgRGNLAERQQKLNKHLHDLLRLADL 241
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578831213 159 HRLAVILTNQMTTKIDrnqAL----LVPALGESWGHAATIRLIFHWDRKQSRLATLYKSPSQKECTVLFQIKPQGFRD 232
Cdd:PRK04301 242 YNAAVVVTNQVMARPD---AFfgdpTQPIGGHILGHTATFRIYLRKSKGNKRIARLVDSPHLPEGEAVFRITEEGIRD 316
|
|
| RecA |
COG0468 |
RecA/RadA recombinase [Replication, recombination and repair]; |
4-47 |
1.09e-03 |
|
RecA/RadA recombinase [Replication, recombination and repair];
Pssm-ID: 440236 [Multi-domain] Cd Length: 351 Bit Score: 39.77 E-value: 1.09e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 578831213 4 TEICGAPGVGKTQLCMQLAVDVQIPecfGGVageAVFIDTEGSF 47
Cdd:COG0468 66 VEIYGPESSGKTTLALHAIAEAQKA---GGI---AAFIDAEHAL 103
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Rad51C |
cd19492 |
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
1-214 |
1.29e-103 |
|
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51C, together with the other RAD51 paralogs, RAD51B, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Additionally, RAD51C acts as a mediator in the early steps of DNA damage signaling.
Pssm-ID: 410900 [Multi-domain] Cd Length: 172 Bit Score: 297.98 E-value: 1.29e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 1 MKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFmvdrvvdlataciqhlqliaekhkgeehrkale 80
Cdd:cd19492 1 GKITEICGVPGVGKTQLCMQLAVNVQIPKCFGGLAGEAIYIDTEGSF--------------------------------- 47
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 81 dftldnilsHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHR 160
Cdd:cd19492 48 ---------NIHYFRVHDYVELLALINSLPKFLEDHPKVKLIVVDSIAFPFRHDFDDLAQRTRLLNGLAQLLHSLARQHN 118
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 578831213 161 LAVILTNQMTTKIDRN-QALLVPALGESWGHAATIRLIFHWDRKQsRLATLYKSP 214
Cdd:cd19492 119 LAVVLTNQVTTKISEDgQSQLVPALGESWSHACTTRLFLTWDEKQ-RFAHLYKSP 172
|
|
| RecA-like |
cd01393 |
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
2-200 |
1.42e-50 |
|
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs RadA and RadB.
Pssm-ID: 410881 [Multi-domain] Cd Length: 185 Bit Score: 163.68 E-value: 1.42e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 2 KTTEICGAPGVGKTQLCMQLAVDVQIPEcfggvaGEAVFIDTEGSFMVDRVVDLATACIQhlqliaekhkgeehrkalED 81
Cdd:cd01393 2 KITEIYGPPGSGKTQLALQLAANALLLG------GGVVWIDTEGAFPPSRLVQILEASPS------------------SE 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 82 FTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD-------LSLRTRLLNGLAQQMIS 154
Cdd:cd01393 58 LELAEALSRLLYFRPPDTLAHLLALDSLPESLFPPPNTSLVVVDSVSALFRKAFPRggdgdssSSLRARLLSQLARALQK 137
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 578831213 155 LANNHRLAVILTNQMTTKID--RNQALLVPALGESWGHAATIRLIFHW 200
Cdd:cd01393 138 LAAQFNLAVVVTNQVTTKIRggSGASLVPPALGNTWEHSVSTRLLLYR 185
|
|
| XRCC3 |
cd19491 |
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells ... |
4-221 |
1.65e-41 |
|
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells 3) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC3, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410899 [Multi-domain] Cd Length: 250 Bit Score: 142.43 E-value: 1.65e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 4 TEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLatACIQHLQLIAEKHKgeehrkaledft 83
Cdd:cd19491 15 TEIAGESGAGKTQLCLQLALTVQLPRELGGLGGGAVYICTESSFPSKRLQQL--ASSLPKRYHLEKAK------------ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 84 ldNILSHIYYFRCRDYTELLAQV-YLLPDFLsEHSKVRLVIVDGIAFPFRHDLD----DLSLRTRLLNGLAQQMISLANN 158
Cdd:cd19491 81 --NFLDNIFVEHVADLETLEHCLnYQLPALL-ERGPIRLVVIDSIAALFRSEFDtsrsDLVERAKYLRRLADHLKRLADK 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 159 HRLAVILTNQMTTKIDRN-----------------------QALLVPALGESWGHAATIRLIFhwdrkqSRLATLYKSPS 215
Cdd:cd19491 158 YNLAVVVVNQVTDRFDSSsdasglgvldylsqfssfsggvsGNRKVPALGLTWANLVNTRLML------SRTPKRITDSS 231
|
....*.
gi 578831213 216 QKECTV 221
Cdd:cd19491 232 AASISV 237
|
|
| Rad51 |
pfam08423 |
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
1-232 |
5.14e-38 |
|
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.
Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 133.58 E-value: 5.14e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 1 MKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDlataciqhlqlIAEKHK--GEEhrka 78
Cdd:pfam08423 37 GSITEIFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEGTFRPERLVA-----------IAERYGldPED---- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 79 ledfTLDNILShiyyfrCRDYT-----ELLAQvylLPDFLSEhSKVRLVIVDGIAFPFRHD---LDDLSLRTRLLNGLAQ 150
Cdd:pfam08423 102 ----VLDNVAY------ARAYNsehqmQLLQQ---AAAMMSE-SRFALLIVDSATALYRTDfsgRGELAERQQHLAKFLR 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 151 QMISLANNHRLAVILTNQMTTKIDRNQALLV-----PALGESWGHAATIRLIFHWDRKQSRLATLYKSPSQKECTVLFQI 225
Cdd:pfam08423 168 TLQRLADEFGVAVVITNQVVAQVDGAAGMFSgdpkkPIGGHIMAHASTTRLSLRKGRGEQRICKIYDSPCLPESEAVFAI 247
|
....*..
gi 578831213 226 KPQGFRD 232
Cdd:pfam08423 248 GSGGIID 254
|
|
| Rad51B |
cd19493 |
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
4-215 |
4.68e-35 |
|
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51B, together with the other RAD51 paralogs, RAD51C, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410901 [Multi-domain] Cd Length: 222 Bit Score: 125.12 E-value: 4.68e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 4 TEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLAtaciqhlqliAEKHKGEEHRKALEDFT 83
Cdd:cd19493 14 TEITGASGSGKTQFALTLASSAAMPARKGGLDGGVLYIDTESKFSAERLAEIA----------EARFPEAFSGFMEENER 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 84 LDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHsKVRLVIVDGIAFPFRHD----LDDLSLRTRLLNGLAQQMISLANNH 159
Cdd:cd19493 84 AEEMLKRVAVVRVTTLAQLLERLPNLEEHILSS-GVRLVVIDSIAALVRREfggsDGEVTERHNALAREASSLKRLAEEF 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 160 RLAVILTNQMTTKIDRNQ---ALLVPALGESWGHAATIRLIFHWDRKQS-RLATLYKSPS 215
Cdd:cd19493 163 RIAVLVTNQATTHFGDAGdgsSGVTAALGDAWAHAVNTRLRLERCLLQLrRVLEIVKSPL 222
|
|
| archRadA |
cd19515 |
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a ... |
4-232 |
4.37e-34 |
|
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a homolog of Rad51. RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR)
Pssm-ID: 410923 [Multi-domain] Cd Length: 233 Bit Score: 122.86 E-value: 4.37e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 4 TEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLAtaciqhlqliaeKHKGEEhrkaledft 83
Cdd:cd19515 22 TEVFGEFGSGKTQLCHQLAVNVQLPPEEGGLNGKAVYIDTENTFRPERIMQMA------------KALGLD--------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 84 LDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDL---DDLSLRTRLLNGLAQQMISLANNHR 160
Cdd:cd19515 81 PDEVLDNIYVARAYNSNHQMLLVEKAEDLIKEGNNIKLLIVDSLTSHFRAEYvgrGTLAERQQKLNKHLHDLHRLADLYN 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 578831213 161 LAVILTNQMTTKIDRNQAL-LVPALGESWGHAATIRLIFHWDRKQSRLATLYKSPSQKECTVLFQIKPQGFRD 232
Cdd:cd19515 161 IAVLVTNQVMAKPDAFFGDpTQAIGGHILGHAATFRVYLRKGKGGKRIARLVDSPHLPEGEAVFRITEKGIED 233
|
|
| DMC1 |
cd19514 |
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in ... |
1-232 |
5.61e-34 |
|
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in meiosis. It assembles at the sites of programmed DNA double-strand breaks and carries out a search for allelic DNA sequences located on homologous chromatids. It forms octameric rings.
Pssm-ID: 410922 [Multi-domain] Cd Length: 236 Bit Score: 122.85 E-value: 5.61e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 1 MKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDlataciqhlqlIAEKHkGEEHRKAle 80
Cdd:cd19514 19 MSITEVFGEFRTGKTQLSHTLCVTAQLPGSMGGGGGKVAYIDTEGTFRPDRIRP-----------IAERF-GVDHDAV-- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 81 dftLDNILshiyYFRCrdYT-----ELLAQVyllPDFLSEHSKVRLVIVDGIAFPFRHDLD---DLSLRTRLLNGLAQQM 152
Cdd:cd19514 85 ---LDNIL----YARA--YTsehqmELLDYV---AAKFHEEAVFRLLIIDSIMALFRVDFSgrgELAERQQKLAQMLSRL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 153 ISLANNHRLAVILTNQMTTkiDRNQALLV------PALGESWGHAATIRLIFHWDRKQSRLATLYKSPSQKECTVLFQIK 226
Cdd:cd19514 153 QKISEEYNVAVFITNQVTA--DPGAAMTFqadpkkPIGGHILAHASTTRISLRKGRGEERIAKIYDSPDLPENEATFAIT 230
|
....*.
gi 578831213 227 PQGFRD 232
Cdd:cd19514 231 AGGIAD 236
|
|
| recomb_radA |
TIGR02236 |
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA ... |
4-232 |
1.48e-33 |
|
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 131290 [Multi-domain] Cd Length: 310 Bit Score: 123.70 E-value: 1.48e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 4 TEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLAtaciqhlqliaekhkgeEHRKALEDFT 83
Cdd:TIGR02236 98 TEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMA-----------------EARGLDPDEV 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 84 LDNilshIYYFRCRDYTELLAQVYLLPDFLSEHSK-VRLVIVDGIAFPFRHDL---DDLSLRTRLLNGLAQQMISLANNH 159
Cdd:TIGR02236 161 LKN----IYVARAYNSNHQMLLVEKAEDLIKELNNpVKLLIVDSLTSHFRAEYvgrGALAERQQKLNKHLHDLLRLADLY 236
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 578831213 160 RLAVILTNQMTTKIDrnqAL----LVPALGESWGHAATIRLIFHWDRKQSRLATLYKSPSQKECTVLFQIKPQGFRD 232
Cdd:TIGR02236 237 NAAVVVTNQVMARPD---AFfgdpTRPIGGHILGHAATFRVYLRKGKGDKRIARLVDSPHLPEGEAVFRITEKGIED 310
|
|
| radA |
PRK04301 |
DNA repair and recombination protein RadA; Validated |
4-232 |
2.06e-32 |
|
DNA repair and recombination protein RadA; Validated
Pssm-ID: 235273 [Multi-domain] Cd Length: 317 Bit Score: 120.75 E-value: 2.06e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 4 TEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLAtaciqhlqliaekhkgeEHRKALEDFT 83
Cdd:PRK04301 105 TEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMA-----------------EALGLDPDEV 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 84 LDNilshIYYFRCR--DYTELLAQVylLPDFLSEHSKVRLVIVDGIAFPFRHD---LDDLSLRTRLLNGLAQQMISLANN 158
Cdd:PRK04301 168 LDN----IHVARAYnsDHQMLLAEK--AEELIKEGENIKLVIVDSLTAHFRAEyvgRGNLAERQQKLNKHLHDLLRLADL 241
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578831213 159 HRLAVILTNQMTTKIDrnqAL----LVPALGESWGHAATIRLIFHWDRKQSRLATLYKSPSQKECTVLFQIKPQGFRD 232
Cdd:PRK04301 242 YNAAVVVTNQVMARPD---AFfgdpTQPIGGHILGHTATFRIYLRKSKGNKRIARLVDSPHLPEGEAVFRITEEGIRD 316
|
|
| Rad51_DMC1_archRadA |
cd01123 |
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic ... |
1-229 |
3.12e-30 |
|
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal protein RadA. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Pssm-ID: 410868 [Multi-domain] Cd Length: 234 Bit Score: 113.01 E-value: 3.12e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 1 MKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLAtaciqhlqliaeKHKGEEHrkale 80
Cdd:cd01123 19 GSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAIYIDTEGTFRPERLRAIA------------QRFGLDP----- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 81 dftlDNILSHIYYFRCRDYTELLAQVYLLPDFLSEhSKVRLVIVDGIAFPFRHDLD---DLSLRTRLLNGLAQQMISLAN 157
Cdd:cd01123 82 ----DDVLDNVAYARAFNSDHQTQLLDQAAAMMVE-SRFKLLIVDSATALYRTDYSgrgELSARQMHLAKFLRMLQRLAD 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 578831213 158 NHRLAVILTNQMTTKIDRNQALLV----PALGESWGHAATIRLIFHWDRKQSRLATLYKSPSQKECTVLFQIKPQG 229
Cdd:cd01123 157 EFGVAVVVTNQVVAQVDGAMMFAAdpkkPIGGNILAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAVFAITADG 232
|
|
| recomb_DMC1 |
TIGR02238 |
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA ... |
1-232 |
7.60e-28 |
|
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Pssm-ID: 131292 [Multi-domain] Cd Length: 313 Bit Score: 108.33 E-value: 7.60e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 1 MKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDlataciqhlqlIAEKHkGEEHrkale 80
Cdd:TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-----------IAERF-GVDP----- 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 81 DFTLDNILshiyYFRCRDYTELLAQVYLLPDFLSEhSKVRLVIVDGIAFPFRHDLD---DLSLRTRLLNGLAQQMISLAN 157
Cdd:TIGR02238 159 DAVLDNIL----YARAYTSEHQMELLDYLAAKFSE-EPFRLLIVDSIMALFRVDFSgrgELSERQQKLAQMLSRLNKISE 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 158 NHRLAVILTNQMTTkiDRNQALLV------PALGESWGHAATIRLIFHWDRKQSRLATLYKSPSQKECTVLFQIKPQGFR 231
Cdd:TIGR02238 234 EFNVAVFVTNQVQA--DPGATMTFiadpkkPIGGHVLAHASTTRILLRKGRGEERVAKLYDSPDMPEAEASFQITEGGIA 311
|
.
gi 578831213 232 D 232
Cdd:TIGR02238 312 D 312
|
|
| PTZ00035 |
PTZ00035 |
Rad51 protein; Provisional |
1-232 |
7.95e-28 |
|
Rad51 protein; Provisional
Pssm-ID: 185407 [Multi-domain] Cd Length: 337 Bit Score: 108.93 E-value: 7.95e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 1 MKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDlataciqhlqlIAEKHK--GEEhrka 78
Cdd:PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQ-----------IAERFGldPED---- 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 79 ledfTLDNILshiyYFRCrdYT-----ELLAQVyllPDFLSEhSKVRLVIVDGIAFPFRHDLD---DLSLRTRLLNGLAQ 150
Cdd:PTZ00035 183 ----VLDNIA----YARA--YNhehqmQLLSQA---AAKMAE-ERFALLIVDSATALFRVDYSgrgELAERQQHLGKFLR 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 151 QMISLANNHRLAVILTNQMTTKIDRNQALL----VPALGESWGHAATIRLIFHWDRKQSRLATLYKSPSQKECTVLFQIK 226
Cdd:PTZ00035 249 ALQKLADEFNVAVVITNQVMADVDGASMFVadpkKPIGGHIIAHASTTRLSLRKGRGEQRICKIYDSPNLPESEAVFAIS 328
|
....*.
gi 578831213 227 PQGFRD 232
Cdd:PTZ00035 329 EGGIID 334
|
|
| Rad51 |
cd19513 |
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous ... |
4-232 |
1.90e-26 |
|
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51 is recruited to the break site with the help of its paralogs, RAD51D, RAD51B, RAD51C, XRCC3, and XRCC2, where it forms long helical polymers which wrap around the ssDNA tail at the break which leads to pairing and strand invasion.
Pssm-ID: 410921 [Multi-domain] Cd Length: 235 Bit Score: 102.78 E-value: 1.90e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 4 TEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRvvdlataciqhLQLIAEKHK--GEEhrkaled 81
Cdd:cd19513 22 TELFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-----------LLAIAERYGlnGED------- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 82 fTLDNIlSHIYYFRCRDYTELLAQVYLLpdfLSEhSKVRLVIVDGIAFPFRHDLD---DLSLRTRLLNGLAQQMISLANN 158
Cdd:cd19513 84 -VLDNV-AYARAYNTDHQMQLLIQASAM---MAE-SRYALLIVDSATALYRTDYSgrgELSARQMHLAKFLRMLQRLADE 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578831213 159 HRLAVILTNQMTTKIDRNQALLVPAL----GESWGHAATIRLIFHWDRKQSRLATLYKSPSQKECTVLFQIKPQGFRD 232
Cdd:cd19513 158 FGVAVVITNQVVAQVDGAAMFAGDPKkpigGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAVFAITEDGIGD 235
|
|
| XRCC2 |
cd19490 |
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells ... |
5-199 |
1.77e-25 |
|
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells 2) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC2, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC3, helps recruit RAD51 to the break site.
Pssm-ID: 410898 [Multi-domain] Cd Length: 226 Bit Score: 100.11 E-value: 1.77e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 5 EICGAPGVGKTQLCMQLAVDVQIPECFGGVA-----GEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRkal 79
Cdd:cd19490 5 EITGPSGSGKTELLYHLAARCILPSSWGGVPlggleAAVVFIDTDGRFDILRLRSILEARIRAAIQAANSSDDEEDV--- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 80 eDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFL---SEHSKVRLVIVDGIAFPFRHD-------LDDLSLRTRLLNGLA 149
Cdd:cd19490 82 -EEIARECLQRLHIFRCHSSLQLLATLLSLENYLlslSANPELGLLLIDSISAFYWQDrfsaelaRAAPLLQEAALRAIL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 578831213 150 QQMISLANNHRLAVILTNQM--------TTKIDRNQALLVP-------ALGESWGHAATIRLIFH 199
Cdd:cd19490 161 RELRRLRRRFQLVVIATKQAlfpgksasTDNPAANNAVSKAsapshreYLPRPWQRLVTHRLVLS 225
|
|
| PLN03187 |
PLN03187 |
meiotic recombination protein DMC1 homolog; Provisional |
4-232 |
3.31e-25 |
|
meiotic recombination protein DMC1 homolog; Provisional
Pssm-ID: 215620 [Multi-domain] Cd Length: 344 Bit Score: 101.78 E-value: 3.31e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 4 TEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLAtaciqhlqliaekhkgeehrkalEDFT 83
Cdd:PLN03187 129 TEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIA-----------------------ERFG 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 84 LDN--ILSHIYYFRCRDYTELLAQVYLLPDFLSEHSkVRLVIVDGIAFPFRHDL---DDLSLRTRLLNGLAQQMISLANN 158
Cdd:PLN03187 186 MDAdaVLDNIIYARAYTYEHQYNLLLGLAAKMAEEP-FRLLIVDSVIALFRVDFtgrGELAERQQKLAQMLSRLTKIAEE 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 159 HRLAVILTNQ-------MTTKIDRNQallvPALGESWGHAATIRLIFHWDRKQSRLATLYKSPSQKECTVLFQIKPQGFR 231
Cdd:PLN03187 265 FNVAVYMTNQviadpggGMFISDPKK----PAGGHVLAHAATIRLMLRKGKGEQRVCKVFDAPNLPEAEAEFQITSGGIM 340
|
.
gi 578831213 232 D 232
Cdd:PLN03187 341 D 341
|
|
| Rad51D |
cd19489 |
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
4-213 |
4.22e-25 |
|
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51D, together with the other RAD51 paralogs, RAD51B, RAD51C, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410897 [Multi-domain] Cd Length: 209 Bit Score: 98.48 E-value: 4.22e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 4 TEICGAPGVGKTQLCMQLAVDVQipeCFGGVAgeAVFIDTEGSFMVDRVVDLATACIQHLQLIAEkhkgeehrkaledft 83
Cdd:cd19489 10 TELVGESSSGKTQLCLTAAANVA---SRSGQN--VLYIDTKSSFSARRLAQILKSRAQDAEEIDK--------------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 84 ldnILSHIYYFRCRDYTELLAQVYLLPDFLS-----EHSKVRLVIVDGIAFPFRHDLDDLSLR--TRLLNGLAQQMISLA 156
Cdd:cd19489 70 ---ALQRIRVVRVFDPYELLDLLEELRNTLSqqqenLYSRLKLVIIDSLSALISPLLGGSKHSegHALLASLARLLKKLA 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 578831213 157 NNHRLAVILTNQMTTKID-RNQALLVPALGESWGHAATIRLIF-----HWDRKQSRLATLYKS 213
Cdd:cd19489 147 AEYQIAVLVTNLTVRGGDgGQQGSTKPALGEYWESVPSTRLLLsrdenDPEESGVCTATLLKS 209
|
|
| PLN03186 |
PLN03186 |
DNA repair protein RAD51 homolog; Provisional |
4-233 |
8.74e-25 |
|
DNA repair protein RAD51 homolog; Provisional
Pssm-ID: 178728 [Multi-domain] Cd Length: 342 Bit Score: 100.58 E-value: 8.74e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 4 TEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDlataciqhlqlIAEKhkgeehrkaledFT 83
Cdd:PLN03186 126 TEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQ-----------IAER------------FG 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 84 LD--NILSHIYYFRCRDyTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLD---DLSLRTRLLNGLAQQMISLANN 158
Cdd:PLN03186 183 LNgaDVLENVAYARAYN-TDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSgrgELSARQMHLGKFLRSLQRLADE 261
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 578831213 159 HRLAVILTNQMTTKIDRNQ----ALLVPALGESWGHAATIRLIFHWDRKQSRLATLYKSPSQKECTVLFQIKPQGFRDT 233
Cdd:PLN03186 262 FGVAVVITNQVVAQVDGSAffagPQLKPIGGNIMAHASTTRLALRKGRGENRICKVISSPCLPEAEARFSISSEGVTDV 340
|
|
| radB |
PRK09361 |
DNA repair and recombination protein RadB; Provisional |
4-232 |
2.25e-24 |
|
DNA repair and recombination protein RadB; Provisional
Pssm-ID: 236482 [Multi-domain] Cd Length: 225 Bit Score: 97.24 E-value: 2.25e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 4 TEICGAPGVGKTQLCMQLAVDVQIPEcfggvaGEAVFIDTEGsFMVDRVVDLATaciqhlqliaekhkgeehrkalEDFt 83
Cdd:PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKNG------KKVIYIDTEG-LSPERFKQIAG----------------------EDF- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 84 lDNILSHIYYFRCRDYTELLAQVYLLPDFLSEhsKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQQM---ISLANNHR 160
Cdd:PRK09361 76 -EELLSNIIIFEPSSFEEQSEAIRKAEKLAKE--NVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLthlLKLARKHD 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 161 LAVILTNQMTTKIDRNQallVPALGEswghaatiRLIFHW---------DRKQSRLATLYKSPSQKEC-TVLFQIKPQGF 230
Cdd:PRK09361 153 LAVVITNQVYSDIDSDG---LRPLGG--------HTLEHWsktilrlekFRNGKRRATLEKHRSRPEGeSAEFRITDRGI 221
|
..
gi 578831213 231 RD 232
Cdd:PRK09361 222 EI 223
|
|
| recomb_RAD51 |
TIGR02239 |
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein ... |
4-232 |
7.06e-24 |
|
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Pssm-ID: 274048 [Multi-domain] Cd Length: 316 Bit Score: 97.87 E-value: 7.06e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 4 TEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDlataciqhlqlIAEKHK--GEEhrkaled 81
Cdd:TIGR02239 99 TEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLA-----------IAERYGlnPED------- 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 82 fTLDNIlSHIYYFRCRDYTELLAQVYLLpdfLSEhSKVRLVIVDGIAFPFRHDLD---DLSLRTRLLNGLAQQMISLANN 158
Cdd:TIGR02239 161 -VLDNV-AYARAYNTDHQLQLLQQAAAM---MSE-SRFALLIVDSATALYRTDFSgrgELSARQMHLARFLRSLQRLADE 234
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 578831213 159 HRLAVILTNQMTTKIDRNQALLV-----PALGESWGHAATIRLIFHWDRKQSRLATLYKSPSQKECTVLFQIKPQGFRD 232
Cdd:TIGR02239 235 FGVAVVITNQVVAQVDGAGSMFAgdpkkPIGGNIMAHASTTRLSLRKGRGEQRICKIYDSPCLPESEAMFAIYEDGIGD 313
|
|
| archRadB |
cd01394 |
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional ... |
4-231 |
8.82e-21 |
|
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional homologue to the bacterial RecA. The precise function of RadB is unclear.
Pssm-ID: 410882 [Multi-domain] Cd Length: 216 Bit Score: 87.37 E-value: 8.82e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 4 TEICGAPGVGKTQLCMQLAVDVqipecfGGVAGEAVFIDTEGsFMVDRVVDLAtaciqhlqliaekhkGEEHRKaledft 83
Cdd:cd01394 22 TQIYGPPGSGKTNICLQLAVEA------AKQGKKVVYIDTEG-LSPERFQQIA---------------GERFES------ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 84 ldnILSHIYYFRCRDYTELLAQVYLLPDFLSEHsKVRLVIVDGIAFPFRHDLDDLSlrtRLLNGLAQQMI---SLANNHR 160
Cdd:cd01394 74 ---IASNIIVFEPYSFDEQGVAIQEAEKLLKSD-KVDLVVVDSATALYRLELGDDS---EANRELSRQMSkllSIARKYD 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 578831213 161 LAVILTNQMTTKIDRNQALLVPalGESWGHA--ATIRLifhwDRKQ--SRLATLYKSPSQKE-CTVLFQIKPQGFR 231
Cdd:cd01394 147 IPVVITNQVYSDIDDDRLKPVG--GTLLEHWskAIIRL----EKSPpgLRRATLEKHRSRPEgQSAGFRITDRGIR 216
|
|
| recomb_radB |
TIGR02237 |
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB ... |
4-229 |
1.33e-14 |
|
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Pssm-ID: 274047 [Multi-domain] Cd Length: 209 Bit Score: 70.52 E-value: 1.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 4 TEICGAPGVGKTQLCMQLAVDVQipecfgGVAGEAVFIDTEGsFMVDRVVDLATAciqhlqliaekhkgeehrkaledfT 83
Cdd:TIGR02237 15 TQIYGPPGSGKTNICMILAVNAA------RQGKKVVYIDTEG-LSPERFKQIAED------------------------R 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 84 LDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHsKVRLVIVDGIAFPFRHDL-DDLSLRTRLLNGLAQQMISLANNHRLA 162
Cdd:TIGR02237 64 PERALSNFIVFEVFDFDEQGVAIQKTSKFIDRD-SASLVVVDSFTALYRLELsDDRISRNRELARQLTLLLSLARKKNLA 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 578831213 163 VILTNQMTTKIDRNQALlvPALGESWGHAAtiRLIFHWDR-KQSRLATLYKSPSQKEC-TVLFQIKPQG 229
Cdd:TIGR02237 143 VVITNQVYTDVNNGTLR--PLGGHLLEHWS--KVILRLEKfRGRRLATLEKHRSRPEGeSVYFRITDDG 207
|
|
| RecA |
COG0468 |
RecA/RadA recombinase [Replication, recombination and repair]; |
4-47 |
1.09e-03 |
|
RecA/RadA recombinase [Replication, recombination and repair];
Pssm-ID: 440236 [Multi-domain] Cd Length: 351 Bit Score: 39.77 E-value: 1.09e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 578831213 4 TEICGAPGVGKTQLCMQLAVDVQIPecfGGVageAVFIDTEGSF 47
Cdd:COG0468 66 VEIYGPESSGKTTLALHAIAEAQKA---GGI---AAFIDAEHAL 103
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
6-171 |
1.52e-03 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 38.74 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 6 ICGAPGVGKTQLCMQLAVDvqipecfGGVAGE-AVFIDTEGSfmVDRVVDLAtaciqhlqliaeKHKGEEHRKALEDFTL 84
Cdd:COG0467 25 LSGPPGTGKTTLALQFLAE-------GLRRGEkGLYVSFEES--PEQLLRRA------------ESLGLDLEEYIESGLL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 85 dNILSHIYYFRCRDYTELLAQvylLPDFLSEHsKVRLVIVDGIAfPFRHDLDDLSLRTRLLNGLaqqmISLANNHRLAVI 164
Cdd:COG0467 84 -RIIDLSPEELGLDLEELLAR---LREAVEEF-GAKRVVIDSLS-GLLLALPDPERLREFLHRL----LRYLKKRGVTTL 153
|
....*..
gi 578831213 165 LTNQMTT 171
Cdd:COG0467 154 LTSETGG 160
|
|
| RepA |
COG3598 |
RecA-family ATPase [Replication, recombination and repair]; |
2-165 |
5.10e-03 |
|
RecA-family ATPase [Replication, recombination and repair];
Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 37.57 E-value: 5.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 2 KTTEICGAPGVGKTQLCMQLAVDVQIPECFGGV---AGEAVFIDTEGSF--MVDRVVDLATACiqhlqliaekhkgeehr 76
Cdd:COG3598 14 GVTLLAGPPGTGKSFLALQLAAAVAAGGPWLGRrvpPGKVLYLAAEDDRgeLRRRLKALGADL----------------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831213 77 kaleDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLsEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQqmisLA 156
Cdd:COG3598 77 ----GLPFADLDGRLRLLSLAGDLDDTDDLEALERAI-EEEGPDLVVIDPLARVFGGDENDAEEMRAFLNPLDR----LA 147
|
....*....
gi 578831213 157 NNHRLAVIL 165
Cdd:COG3598 148 ERTGAAVLL 156
|
|
| |
