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Concise Results
Standard Results
Full Results
janus kinase and microtubule-interacting protein 3 isoform f [Homo sapiens]
Protein Classification
SMC_prok_B and JAKMIP_CC3 domain-containing protein ( domain architecture ID 13531091 )
SMC_prok_B and JAKMIP_CC3 domain-containing protein
List of domain hits
Name
Accession
Description
Interval
E-value
JAKMIP_CC3
pfam16034 JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP ...
427-623
1.68e-87
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP family (Janus kinase and microtubule-interacting proteins) and is predicted to be a coiled coil. It interacts with the Janus family kinases Tyk2 and Jak1.
Pssm-ID: 464986 [Multi-domain]
Cd Length: 199
Bit Score: 276.38
E-value: 1.68e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 427 ERDKL L R F RKQR K K MA K LPKP - V VVETFFGYDEEAS LE S DG SS V SY Q TDRTD Q TP C TPD D DL E EG M A K EE T ELRFRQLT M 505
Cdd:pfam16034 1 ERDKL I R A RKQR R K EK K KKLR d M VVETFFGYDEEAS VD S ET SS L SY N TDRTD S TP A TPD E DL D EG V A A EE A ELRFRQLT R 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 506 EYQALQRAYALLQEQ V GGTLDAERE V KTREQLQAE VQ RAQ A RIEDLE K ALA EQ GQD M KW I EEKQAL Y RRNQELVEKI KQ M 585
Cdd:pfam16034 81 EYQALQRAYALLQEQ S GGTLDAERE A KTREQLQAE LR RAQ S RIEDLE S ALA QK GQD S KW V EEKQAL I RRNQELVEKI RI M 160
170 180 190
....*....|....*....|....*....|....*...
gi 1972711911 586 E T EE A RL RH E V QDARDQNELLEFRILELEERER K SPAI 623
Cdd:pfam16034 161 E Q EE G RL KN E I QDARDQNELLEFRILELEERER R SPAI 198
Smc super family
cl34174 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
26-617
3.64e-08
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
COG1196 :Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 57.25
E-value: 3.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 26 ED L R A K L TDIQIELQQEKSKVSKV E R E KNQELRQVR E H E QHKTAVL L T EL KTK L H E EK m K EL QAVRET l LRQHE AEL L R V 105
Cdd:COG1196 223 KE L E A E L LLLKLRELEAELEELEA E L E ELEAELEEL E A E LAELEAE L E EL RLE L E E LE - L EL EEAQAE - EYELL AEL A R L 300
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 106 IKIKDNENQ R LQA L LSA L rdggpekvktvlls E AK EE AKKGF E V E KVKMQQ E IS EL KGAKRQV EE A L TLVIQADKIKAAE 185
Cdd:COG1196 301 EQDIARLEE R RRE L EER L -------------- E EL EE ELAEL E E E LEELEE E LE EL EEELEEA EE E L EEAEAELAEAEEA 366
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 186 irsvyhlh QE E ITRIKK E C E R E IRR L M EE IKFKD RA VFV L ERE L GVQAGHAQR L QLQK E A L D E Q L SQVR EA DRH pgsprr 265
Cdd:COG1196 367 -------- LL E AEAELA E A E E E LEE L A EE LLEAL RA AAE L AAQ L EELEEAEEA L LERL E R L E E E L EELE EA LAE ------ 432
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 266 elphaagagdasdhsgspql D E KDARRFQLKIA E LSAIIRK LE DRNAL L S E ERN ELL KRVREA E SQYKP LL DKNKRLSRK 345
Cdd:COG1196 433 -------------------- L E EEEEEEEEALE E AAEEEAE LE EEEEA L L E LLA ELL EEAALL E AALAE LL EELAEAAAR 492
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 346 NED L SH A LRRM E NK L KF V T qeni EMRQR AG IIRRPSSLND L DQSQDER E VDFLK - L QIVE Q QNLIDELSKTLETAG Y V K S 424
Cdd:COG1196 493 LLL L LE A EADY E GF L EG V K ---- AALLL AG LRGLAGAVAV L IGVEAAY E AALEA a L AAAL Q NIVVEDDEVAAAAIE Y L K A 568
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 425 - VLE R DKL L RFR K Q R KKM A KLPKPVVVETFFGY D EE AS LESDGSSVS Y QTDR T DQ - TPCTPDDDLEEGMAKEETEL R F R Q 502
Cdd:COG1196 569 a KAG R ATF L PLD K I R ARA A LAAALARGAIGAAV D LV AS DLREADARY Y VLGD T LL g RTLVAARLEAALRRAVTLAG R L R E 648
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 503 L T M E YQALQRAYA L LQEQVGGT L D A ER E VKTREQLQ AE VQRAQARIEDLEKALA E QGQDMKWIE E KQA L YRRNQ E LVEKI 582
Cdd:COG1196 649 V T L E GEGGSAGGS L TGGSRREL L A A LL E AEAELEEL AE RLAEEELELEEALLAE E EEERELAEA E EER L EEELE E EALEE 728
570 580 590
....*....|....*....|....*....|....*
gi 1972711911 583 KQMETE E AR L RHEVQDARDQN E LLEFRIL E LEER E 617
Cdd:COG1196 729 QLEAER E EL L EELLEEEELLE E EALEELP E PPDL E 763
Smc super family
cl34174 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
493-839
5.85e-06
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
COG1196 :Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 50.32
E-value: 5.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 493 K E ET EL RFRQ L TMEYQA L QRAYAL L QEQVG - GTLDA E REVKTREQ L Q AE VQRAQARI E D LE KA L A E - Q GQDMKWIE E KQA 570
Cdd:COG1196 220 E E LK EL EAEL L LLKLRE L EAELEE L EAELE e LEAEL E ELEAELAE L E AE LEELRLEL E E LE LE L E E a Q AEEYELLA E LAR 299
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 571 L YRRNQE L V E KIKQM E TEEAR L RH E VQDARDQN E L LE FRIL ELEE RE rkspaisfhhtpfvdgksplqvyceaegvtdiv 650
Cdd:COG1196 300 L EQDIAR L E E RRREL E ERLEE L EE E LAELEEEL E E LE EELE ELEE EL --------------------------------- 346
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 651 v A E LMKK L DILGDNANLTN E EQVVVIQAR tvltlaekirlhfalsptlsafppkggkwl QQI EE TEAA L QRKMVDLESEK 730
Cdd:COG1196 347 - E E AEEE L EEAEAELAEAE E ALLEAEAEL ------------------------------ AEA EE ELEE L AEELLEALRAA 395
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 731 ELFSK Q KGY L D E ELDYRKQA L DQANKHIL ELE AM L YDALQQ E AGAKV A ELLSE EE REK L KVAV E Q w KRQVMS EL R E RD A Q 810
Cdd:COG1196 396 AELAA Q LEE L E E AEEALLER L ERLEEELE ELE EA L AELEEE E EEEEE A LEEAA EE EAE L EEEE E A - LLELLA EL L E EA A L 474
330 340
....*....|....*....|....*....
gi 1972711911 811 ILRERM ELL QLAQQRIKE L EERI EA QKRQ 839
Cdd:COG1196 475 LEAALA ELL EELAEAAAR L LLLL EA EADY 503
Name
Accession
Description
Interval
E-value
JAKMIP_CC3
pfam16034 JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP ...
427-623
1.68e-87
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP family (Janus kinase and microtubule-interacting proteins) and is predicted to be a coiled coil. It interacts with the Janus family kinases Tyk2 and Jak1.
Pssm-ID: 464986 [Multi-domain]
Cd Length: 199
Bit Score: 276.38
E-value: 1.68e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 427 ERDKL L R F RKQR K K MA K LPKP - V VVETFFGYDEEAS LE S DG SS V SY Q TDRTD Q TP C TPD D DL E EG M A K EE T ELRFRQLT M 505
Cdd:pfam16034 1 ERDKL I R A RKQR R K EK K KKLR d M VVETFFGYDEEAS VD S ET SS L SY N TDRTD S TP A TPD E DL D EG V A A EE A ELRFRQLT R 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 506 EYQALQRAYALLQEQ V GGTLDAERE V KTREQLQAE VQ RAQ A RIEDLE K ALA EQ GQD M KW I EEKQAL Y RRNQELVEKI KQ M 585
Cdd:pfam16034 81 EYQALQRAYALLQEQ S GGTLDAERE A KTREQLQAE LR RAQ S RIEDLE S ALA QK GQD S KW V EEKQAL I RRNQELVEKI RI M 160
170 180 190
....*....|....*....|....*....|....*...
gi 1972711911 586 E T EE A RL RH E V QDARDQNELLEFRILELEERER K SPAI 623
Cdd:pfam16034 161 E Q EE G RL KN E I QDARDQNELLEFRILELEERER R SPAI 198
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
26-617
3.64e-08
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 57.25
E-value: 3.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 26 ED L R A K L TDIQIELQQEKSKVSKV E R E KNQELRQVR E H E QHKTAVL L T EL KTK L H E EK m K EL QAVRET l LRQHE AEL L R V 105
Cdd:COG1196 223 KE L E A E L LLLKLRELEAELEELEA E L E ELEAELEEL E A E LAELEAE L E EL RLE L E E LE - L EL EEAQAE - EYELL AEL A R L 300
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 106 IKIKDNENQ R LQA L LSA L rdggpekvktvlls E AK EE AKKGF E V E KVKMQQ E IS EL KGAKRQV EE A L TLVIQADKIKAAE 185
Cdd:COG1196 301 EQDIARLEE R RRE L EER L -------------- E EL EE ELAEL E E E LEELEE E LE EL EEELEEA EE E L EEAEAELAEAEEA 366
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 186 irsvyhlh QE E ITRIKK E C E R E IRR L M EE IKFKD RA VFV L ERE L GVQAGHAQR L QLQK E A L D E Q L SQVR EA DRH pgsprr 265
Cdd:COG1196 367 -------- LL E AEAELA E A E E E LEE L A EE LLEAL RA AAE L AAQ L EELEEAEEA L LERL E R L E E E L EELE EA LAE ------ 432
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 266 elphaagagdasdhsgspql D E KDARRFQLKIA E LSAIIRK LE DRNAL L S E ERN ELL KRVREA E SQYKP LL DKNKRLSRK 345
Cdd:COG1196 433 -------------------- L E EEEEEEEEALE E AAEEEAE LE EEEEA L L E LLA ELL EEAALL E AALAE LL EELAEAAAR 492
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 346 NED L SH A LRRM E NK L KF V T qeni EMRQR AG IIRRPSSLND L DQSQDER E VDFLK - L QIVE Q QNLIDELSKTLETAG Y V K S 424
Cdd:COG1196 493 LLL L LE A EADY E GF L EG V K ---- AALLL AG LRGLAGAVAV L IGVEAAY E AALEA a L AAAL Q NIVVEDDEVAAAAIE Y L K A 568
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 425 - VLE R DKL L RFR K Q R KKM A KLPKPVVVETFFGY D EE AS LESDGSSVS Y QTDR T DQ - TPCTPDDDLEEGMAKEETEL R F R Q 502
Cdd:COG1196 569 a KAG R ATF L PLD K I R ARA A LAAALARGAIGAAV D LV AS DLREADARY Y VLGD T LL g RTLVAARLEAALRRAVTLAG R L R E 648
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 503 L T M E YQALQRAYA L LQEQVGGT L D A ER E VKTREQLQ AE VQRAQARIEDLEKALA E QGQDMKWIE E KQA L YRRNQ E LVEKI 582
Cdd:COG1196 649 V T L E GEGGSAGGS L TGGSRREL L A A LL E AEAELEEL AE RLAEEELELEEALLAE E EEERELAEA E EER L EEELE E EALEE 728
570 580 590
....*....|....*....|....*....|....*
gi 1972711911 583 KQMETE E AR L RHEVQDARDQN E LLEFRIL E LEER E 617
Cdd:COG1196 729 QLEAER E EL L EELLEEEELLE E EALEELP E PPDL E 763
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
27-835
3.46e-07
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 54.29
E-value: 3.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 27 D L R A K L TDIQIE L Q -- QEKSKVSKV E REKNQELRQVR E H E QHKTAVLLT E L K tkl H EE KMK E LQAVR E TLLRQ h EA EL LR 104
Cdd:TIGR02168 217 E L K A E L RELELA L L vl RLEELREEL E ELQEELKEAEE E L E ELTAELQEL E E K --- L EE LRL E VSELE E EIEEL - QK EL YA 292
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 105 VIKIKDNEN Q RL Q A L LSA L RDGGPEKVKTVLLS E AK E EAKKGFEV E KVKMQQEIS ELK GAKRQV E EA L tlviqadkikaa 184
Cdd:TIGR02168 293 LANEISRLE Q QK Q I L RER L ANLERQLEELEAQL E EL E SKLDELAE E LAELEEKLE ELK EELESL E AE L ------------ 360
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 185 eirsvyhlhq EE ITRIKK E C E REIRR L M E EIKFKDRA V FV LE RELGVQAGHAQ RL QLQK E A L DEQLSQVREADR hpgspr 264
Cdd:TIGR02168 361 ---------- EE LEAELE E L E SRLEE L E E QLETLRSK V AQ LE LQIASLNNEIE RL EARL E R L EDRRERLQQEIE ------ 424
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 265 relphaagagdasdh SGSPQ L D E KDARRF Q LKIA EL SAIIRK L EDRNAL L S E ERN EL LKRVR EAE SQYKPLLDKNKR L SR 344
Cdd:TIGR02168 425 --------------- ELLKK L E E AELKEL Q AELE EL EEELEE L QEELER L E E ALE EL REELE EAE QALDAAERELAQ L QA 489
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 345 KNED L SHALRRM E NKLKF V TQENIEMRQRA GI IRRP S S L NDL D q SQD E REVD flklq IVEQQN L IDELSKT L ET A GYVKS 424
Cdd:TIGR02168 490 RLDS L ERLQENL E GFSEG V KALLKNQSGLS GI LGVL S E L ISV D - EGY E AAIE ----- AALGGR L QAVVVEN L NA A KKAIA 563
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 425 V L ERDK L L R frkqrkk MAK LP KPVVVE T FFGYDEEAS L ESDGSSVSYQT D RTDQT P ------------ CTPD DDL EEGMA 492
Cdd:TIGR02168 564 F L KQNE L G R ------- VTF LP LDSIKG T EIQGNDREI L KNIEGFLGVAK D LVKFD P klrkalsyllgg VLVV DDL DNALE 636
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 493 - KEETELRF R QL T MEYQALQRAYALLQ --- EQVGGT L DAE RE vkt R E Q L QAEVQRAQAR I ED LEKALAE --- QGQDMK wi 565
Cdd:TIGR02168 637 l AKKLRPGY R IV T LDGDLVRPGGVITG gsa KTNSSI L ERR RE --- I E E L EEKIEELEEK I AE LEKALAE lrk ELEELE -- 711
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 566 EE KQA L YRRNQ EL VEK I KQMETEE ARL RH EV QDARDQNEL L EFRIL ELE ERERKSPAISFHHTPFVDGKSPLQVYC EA E - 644
Cdd:TIGR02168 712 EE LEQ L RKELE EL SRQ I SALRKDL ARL EA EV EQLEERIAQ L SKELT ELE AEIEELEERLEEAEEELAEAEAEIEEL EA Q i 791
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 645 GVTDIVVAE L MKK LD I L GDNAN L T NEE qvvvi Q A RTVLT L AEKI R LHF A LSPT L SAFPPKGGKWLQQ IE ETE A A --- L QR 721
Cdd:TIGR02168 792 EQLKEELKA L REA LD E L RAELT L L NEE ----- A A NLRER L ESLE R RIA A TERR L EDLEEQIEELSED IE SLA A E iee L EE 866
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 722 KMVD LESE K E LFSKQKGY L D E E L DYRKQA L DQANKHIL ELE AMLYDALQ -- Q E AGA K V A E L ls E EER E K L K V AVEQWKRQ 799
Cdd:TIGR02168 867 LIEE LESE L E ALLNERAS L E E A L ALLRSE L EELSEELR ELE SKRSELRR el E E LRE K L A Q L -- E LRL E G L E V RIDNLQER 944
810 820 830
....*....|....*....|....*....|....*....
gi 1972711911 800 VMS E LR --- E RDAQILRERMELLQL A QQ R I K E LE ER I EA 835
Cdd:TIGR02168 945 LSE E YS ltl E EAEALENKIEDDEEE A RR R L K R LE NK I KE 983
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
493-839
5.85e-06
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 50.32
E-value: 5.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 493 K E ET EL RFRQ L TMEYQA L QRAYAL L QEQVG - GTLDA E REVKTREQ L Q AE VQRAQARI E D LE KA L A E - Q GQDMKWIE E KQA 570
Cdd:COG1196 220 E E LK EL EAEL L LLKLRE L EAELEE L EAELE e LEAEL E ELEAELAE L E AE LEELRLEL E E LE LE L E E a Q AEEYELLA E LAR 299
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 571 L YRRNQE L V E KIKQM E TEEAR L RH E VQDARDQN E L LE FRIL ELEE RE rkspaisfhhtpfvdgksplqvyceaegvtdiv 650
Cdd:COG1196 300 L EQDIAR L E E RRREL E ERLEE L EE E LAELEEEL E E LE EELE ELEE EL --------------------------------- 346
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 651 v A E LMKK L DILGDNANLTN E EQVVVIQAR tvltlaekirlhfalsptlsafppkggkwl QQI EE TEAA L QRKMVDLESEK 730
Cdd:COG1196 347 - E E AEEE L EEAEAELAEAE E ALLEAEAEL ------------------------------ AEA EE ELEE L AEELLEALRAA 395
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 731 ELFSK Q KGY L D E ELDYRKQA L DQANKHIL ELE AM L YDALQQ E AGAKV A ELLSE EE REK L KVAV E Q w KRQVMS EL R E RD A Q 810
Cdd:COG1196 396 AELAA Q LEE L E E AEEALLER L ERLEEELE ELE EA L AELEEE E EEEEE A LEEAA EE EAE L EEEE E A - LLELLA EL L E EA A L 474
330 340
....*....|....*....|....*....
gi 1972711911 811 ILRERM ELL QLAQQRIKE L EERI EA QKRQ 839
Cdd:COG1196 475 LEAALA ELL EELAEAAAR L LLLL EA EADY 503
PTZ00121
PTZ00121 MAEBL; Provisional
38-601
1.07e-03
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 42.82
E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 38 E LQQEKSKVS K V E R E K N Q E LRQVR E ----- H EQHKT A VLLT E LKT K LH E E K MK E LQAVRETLLRQH E AELLRVI K I K DN E 112
Cdd:PTZ00121 1234 E AKKDAEEAK K A E E E R N N E EIRKF E earma H FARRQ A AIKA E EAR K AD E L K KA E EKKKADEAKKAE E KKKADEA K K K AE E 1313
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 113 NQRLQALLSALRDG gpe K V K TVLLSEAK EEAKK GF E VE K VKMQQEIS E LKG A KRQ v E EA LTLVIQAD K I KA AEIRSVYH l 192
Cdd:PTZ00121 1314 AKKADEAKKKAEEA --- K K K ADAAKKKA EEAKK AA E AA K AEAEAAAD E AEA A EEK - A EA AEKKKEEA K K KA DAAKKKAE - 1388
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 193 HQEEITRI KK EC E r E IRRLME E I K FKDR A VFVLER ----- E LGVQ A GH A QRLQLQKEAL DE QLSQVR EA DRHPGSPRR -- 265
Cdd:PTZ00121 1389 EKKKADEA KK KA E - E DKKKAD E L K KAAA A KKKADE akkka E EKKK A DE A KKKAEEAKKA DE AKKKAE EA KKAEEAKKK ae 1467
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 266 E LPH A AG A GDASDHSGSPQLDE K D A RRFQL K IA E LSAIIRKLEDRNALLSE E RNELLKRVRE AE SQY K PLLD K NKRLSR K 345
Cdd:PTZ00121 1468 E AKK A DE A KKKAEEAKKADEAK K K A EEAKK K AD E AKKAAEAKKKADEAKKA E EAKKADEAKK AE EAK K ADEA K KAEEKK K 1547
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 346 NED L SH A -- L RRM E N K L K f VTQENIEMRQRAGII R RPS sln DLDQSQDE R EVDFL KL QIV E QQNLID E LS K TL E tagyvk 423
Cdd:PTZ00121 1548 ADE L KK A ee L KKA E E K K K - AEEAKKAEEDKNMAL R KAE --- EAKKAEEA R IEEVM KL YEE E KKMKAE E AK K AE E ------ 1617
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 424 svl ERD K LLRFR K -- QR KK MAKLP K PVVV E TFFGYD E EASL E SDGSSVSYQTDRTDQTPCTPDDDLEE gm A K E ETELRFR 501
Cdd:PTZ00121 1618 --- AKI K AEELK K ae EE KK KVEQL K KKEA E EKKKAE E LKKA E EENKIKAAEEAKKAEEDKKKAEEAKK -- A E E DEKKAAE 1692
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 502 Q L TM E YQALQR A YA L LQEQ vggtlda ER E V K TR E Q L QAEVQRAQARI E DLE K ala E QGQ D M K WI EE kqal YRRNQ E LVE K 581
Cdd:PTZ00121 1693 A L KK E AEEAKK A EE L KKKE ------- AE E K K KA E E L KKAEEENKIKA E EAK K --- E AEE D K K KA EE ---- AKKDE E EKK K 1758
570 580
....*....|....*....|
gi 1972711911 582 I KQMET EE ARLRH E VQDARD 601
Cdd:PTZ00121 1759 I AHLKK EE EKKAE E IRKEKE 1778
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
305-619
1.74e-03
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 42.35
E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 305 R KL E DRNA L LSEER N el L K R V ---- R E A E S Q Y K P L --- LD K NK R LSRKNED L SHA -------- L RRMENK L KFVTQ E NI E 369
Cdd:TIGR02168 173 R RK E TERK L ERTRE N -- L D R L edil N E L E R Q L K S L erq AE K AE R YKELKAE L REL elallvlr L EELREE L EELQE E LK E 250
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 370 MRQRAGIIRR psslndl DQSQD E REVDF L K L QIV E QQNL I D EL S K T L ETAGYVK S V LE RD K - L LR F R KQRKKMAKLPKPV 448
Cdd:TIGR02168 251 AEEELEELTA ------- ELQEL E EKLEE L R L EVS E LEEE I E EL Q K E L YALANEI S R LE QQ K q I LR E R LANLERQLEELEA 323
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 449 VV E TFFGYDE E ASL E SDGSSVSYQTDRTDQTPC t PDDDL E EGMAK EE T E L R FRQ L TMEYQA L QRAY A L L QE Q V ggtldae 528
Cdd:TIGR02168 324 QL E ELESKLD E LAE E LAELEEKLEELKEELESL - EAELE E LEAEL EE L E S R LEE L EEQLET L RSKV A Q L EL Q I ------- 395
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 529 revktr EQ L QA E VQ R AQ AR I E D LE KALAEQG Q DMKWIEE K QALYRR n Q EL VEKIKQM E T E EAR L RH E VQDARDQN E L L EF 608
Cdd:TIGR02168 396 ------ AS L NN E IE R LE AR L E R LE DRRERLQ Q EIEELLK K LEEAEL - K EL QAELEEL E E E LEE L QE E LERLEEAL E E L RE 468
330
....*....|.
gi 1972711911 609 RIL E L E ERERK 619
Cdd:TIGR02168 469 ELE E A E QALDA 479
COG4913
COG4913 Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
494-618
1.94e-03
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain]
Cd Length: 1089
Bit Score: 41.82
E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 494 E E T E LRFRQLTMEYQ AL QRAYAL LQE Q vggt LD A EREVKTREQLQAE V QR A QAR I ED LE KA L AEQGQDMKWI ---- E EKQ 569
Cdd:COG4913 620 A E L E EELAEAEERLE AL EAELDA LQE R ---- RE A LQRLAEYSWDEID V AS A ERE I AE LE AE L ERLDASSDDL aale E QLE 695
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1972711911 570 A L YRRNQ EL V E KIKQMET E EA RL RH E VQD A RDQNEL L EF R ILEL E ERE R 618
Cdd:COG4913 696 E L EAELE EL E E ELDELKG E IG RL EK E LEQ A EEELDE L QD R LEAA E DLA R 744
Name
Accession
Description
Interval
E-value
JAKMIP_CC3
pfam16034 JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP ...
427-623
1.68e-87
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP family (Janus kinase and microtubule-interacting proteins) and is predicted to be a coiled coil. It interacts with the Janus family kinases Tyk2 and Jak1.
Pssm-ID: 464986 [Multi-domain]
Cd Length: 199
Bit Score: 276.38
E-value: 1.68e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 427 ERDKL L R F RKQR K K MA K LPKP - V VVETFFGYDEEAS LE S DG SS V SY Q TDRTD Q TP C TPD D DL E EG M A K EE T ELRFRQLT M 505
Cdd:pfam16034 1 ERDKL I R A RKQR R K EK K KKLR d M VVETFFGYDEEAS VD S ET SS L SY N TDRTD S TP A TPD E DL D EG V A A EE A ELRFRQLT R 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 506 EYQALQRAYALLQEQ V GGTLDAERE V KTREQLQAE VQ RAQ A RIEDLE K ALA EQ GQD M KW I EEKQAL Y RRNQELVEKI KQ M 585
Cdd:pfam16034 81 EYQALQRAYALLQEQ S GGTLDAERE A KTREQLQAE LR RAQ S RIEDLE S ALA QK GQD S KW V EEKQAL I RRNQELVEKI RI M 160
170 180 190
....*....|....*....|....*....|....*...
gi 1972711911 586 E T EE A RL RH E V QDARDQNELLEFRILELEERER K SPAI 623
Cdd:pfam16034 161 E Q EE G RL KN E I QDARDQNELLEFRILELEERER R SPAI 198
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
26-617
3.64e-08
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 57.25
E-value: 3.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 26 ED L R A K L TDIQIELQQEKSKVSKV E R E KNQELRQVR E H E QHKTAVL L T EL KTK L H E EK m K EL QAVRET l LRQHE AEL L R V 105
Cdd:COG1196 223 KE L E A E L LLLKLRELEAELEELEA E L E ELEAELEEL E A E LAELEAE L E EL RLE L E E LE - L EL EEAQAE - EYELL AEL A R L 300
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 106 IKIKDNENQ R LQA L LSA L rdggpekvktvlls E AK EE AKKGF E V E KVKMQQ E IS EL KGAKRQV EE A L TLVIQADKIKAAE 185
Cdd:COG1196 301 EQDIARLEE R RRE L EER L -------------- E EL EE ELAEL E E E LEELEE E LE EL EEELEEA EE E L EEAEAELAEAEEA 366
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 186 irsvyhlh QE E ITRIKK E C E R E IRR L M EE IKFKD RA VFV L ERE L GVQAGHAQR L QLQK E A L D E Q L SQVR EA DRH pgsprr 265
Cdd:COG1196 367 -------- LL E AEAELA E A E E E LEE L A EE LLEAL RA AAE L AAQ L EELEEAEEA L LERL E R L E E E L EELE EA LAE ------ 432
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 266 elphaagagdasdhsgspql D E KDARRFQLKIA E LSAIIRK LE DRNAL L S E ERN ELL KRVREA E SQYKP LL DKNKRLSRK 345
Cdd:COG1196 433 -------------------- L E EEEEEEEEALE E AAEEEAE LE EEEEA L L E LLA ELL EEAALL E AALAE LL EELAEAAAR 492
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 346 NED L SH A LRRM E NK L KF V T qeni EMRQR AG IIRRPSSLND L DQSQDER E VDFLK - L QIVE Q QNLIDELSKTLETAG Y V K S 424
Cdd:COG1196 493 LLL L LE A EADY E GF L EG V K ---- AALLL AG LRGLAGAVAV L IGVEAAY E AALEA a L AAAL Q NIVVEDDEVAAAAIE Y L K A 568
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 425 - VLE R DKL L RFR K Q R KKM A KLPKPVVVETFFGY D EE AS LESDGSSVS Y QTDR T DQ - TPCTPDDDLEEGMAKEETEL R F R Q 502
Cdd:COG1196 569 a KAG R ATF L PLD K I R ARA A LAAALARGAIGAAV D LV AS DLREADARY Y VLGD T LL g RTLVAARLEAALRRAVTLAG R L R E 648
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 503 L T M E YQALQRAYA L LQEQVGGT L D A ER E VKTREQLQ AE VQRAQARIEDLEKALA E QGQDMKWIE E KQA L YRRNQ E LVEKI 582
Cdd:COG1196 649 V T L E GEGGSAGGS L TGGSRREL L A A LL E AEAELEEL AE RLAEEELELEEALLAE E EEERELAEA E EER L EEELE E EALEE 728
570 580 590
....*....|....*....|....*....|....*
gi 1972711911 583 KQMETE E AR L RHEVQDARDQN E LLEFRIL E LEER E 617
Cdd:COG1196 729 QLEAER E EL L EELLEEEELLE E EALEELP E PPDL E 763
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
27-835
3.46e-07
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 54.29
E-value: 3.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 27 D L R A K L TDIQIE L Q -- QEKSKVSKV E REKNQELRQVR E H E QHKTAVLLT E L K tkl H EE KMK E LQAVR E TLLRQ h EA EL LR 104
Cdd:TIGR02168 217 E L K A E L RELELA L L vl RLEELREEL E ELQEELKEAEE E L E ELTAELQEL E E K --- L EE LRL E VSELE E EIEEL - QK EL YA 292
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 105 VIKIKDNEN Q RL Q A L LSA L RDGGPEKVKTVLLS E AK E EAKKGFEV E KVKMQQEIS ELK GAKRQV E EA L tlviqadkikaa 184
Cdd:TIGR02168 293 LANEISRLE Q QK Q I L RER L ANLERQLEELEAQL E EL E SKLDELAE E LAELEEKLE ELK EELESL E AE L ------------ 360
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 185 eirsvyhlhq EE ITRIKK E C E REIRR L M E EIKFKDRA V FV LE RELGVQAGHAQ RL QLQK E A L DEQLSQVREADR hpgspr 264
Cdd:TIGR02168 361 ---------- EE LEAELE E L E SRLEE L E E QLETLRSK V AQ LE LQIASLNNEIE RL EARL E R L EDRRERLQQEIE ------ 424
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 265 relphaagagdasdh SGSPQ L D E KDARRF Q LKIA EL SAIIRK L EDRNAL L S E ERN EL LKRVR EAE SQYKPLLDKNKR L SR 344
Cdd:TIGR02168 425 --------------- ELLKK L E E AELKEL Q AELE EL EEELEE L QEELER L E E ALE EL REELE EAE QALDAAERELAQ L QA 489
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 345 KNED L SHALRRM E NKLKF V TQENIEMRQRA GI IRRP S S L NDL D q SQD E REVD flklq IVEQQN L IDELSKT L ET A GYVKS 424
Cdd:TIGR02168 490 RLDS L ERLQENL E GFSEG V KALLKNQSGLS GI LGVL S E L ISV D - EGY E AAIE ----- AALGGR L QAVVVEN L NA A KKAIA 563
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 425 V L ERDK L L R frkqrkk MAK LP KPVVVE T FFGYDEEAS L ESDGSSVSYQT D RTDQT P ------------ CTPD DDL EEGMA 492
Cdd:TIGR02168 564 F L KQNE L G R ------- VTF LP LDSIKG T EIQGNDREI L KNIEGFLGVAK D LVKFD P klrkalsyllgg VLVV DDL DNALE 636
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 493 - KEETELRF R QL T MEYQALQRAYALLQ --- EQVGGT L DAE RE vkt R E Q L QAEVQRAQAR I ED LEKALAE --- QGQDMK wi 565
Cdd:TIGR02168 637 l AKKLRPGY R IV T LDGDLVRPGGVITG gsa KTNSSI L ERR RE --- I E E L EEKIEELEEK I AE LEKALAE lrk ELEELE -- 711
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 566 EE KQA L YRRNQ EL VEK I KQMETEE ARL RH EV QDARDQNEL L EFRIL ELE ERERKSPAISFHHTPFVDGKSPLQVYC EA E - 644
Cdd:TIGR02168 712 EE LEQ L RKELE EL SRQ I SALRKDL ARL EA EV EQLEERIAQ L SKELT ELE AEIEELEERLEEAEEELAEAEAEIEEL EA Q i 791
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 645 GVTDIVVAE L MKK LD I L GDNAN L T NEE qvvvi Q A RTVLT L AEKI R LHF A LSPT L SAFPPKGGKWLQQ IE ETE A A --- L QR 721
Cdd:TIGR02168 792 EQLKEELKA L REA LD E L RAELT L L NEE ----- A A NLRER L ESLE R RIA A TERR L EDLEEQIEELSED IE SLA A E iee L EE 866
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 722 KMVD LESE K E LFSKQKGY L D E E L DYRKQA L DQANKHIL ELE AMLYDALQ -- Q E AGA K V A E L ls E EER E K L K V AVEQWKRQ 799
Cdd:TIGR02168 867 LIEE LESE L E ALLNERAS L E E A L ALLRSE L EELSEELR ELE SKRSELRR el E E LRE K L A Q L -- E LRL E G L E V RIDNLQER 944
810 820 830
....*....|....*....|....*....|....*....
gi 1972711911 800 VMS E LR --- E RDAQILRERMELLQL A QQ R I K E LE ER I EA 835
Cdd:TIGR02168 945 LSE E YS ltl E EAEALENKIEDDEEE A RR R L K R LE NK I KE 983
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
493-839
5.85e-06
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 50.32
E-value: 5.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 493 K E ET EL RFRQ L TMEYQA L QRAYAL L QEQVG - GTLDA E REVKTREQ L Q AE VQRAQARI E D LE KA L A E - Q GQDMKWIE E KQA 570
Cdd:COG1196 220 E E LK EL EAEL L LLKLRE L EAELEE L EAELE e LEAEL E ELEAELAE L E AE LEELRLEL E E LE LE L E E a Q AEEYELLA E LAR 299
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 571 L YRRNQE L V E KIKQM E TEEAR L RH E VQDARDQN E L LE FRIL ELEE RE rkspaisfhhtpfvdgksplqvyceaegvtdiv 650
Cdd:COG1196 300 L EQDIAR L E E RRREL E ERLEE L EE E LAELEEEL E E LE EELE ELEE EL --------------------------------- 346
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 651 v A E LMKK L DILGDNANLTN E EQVVVIQAR tvltlaekirlhfalsptlsafppkggkwl QQI EE TEAA L QRKMVDLESEK 730
Cdd:COG1196 347 - E E AEEE L EEAEAELAEAE E ALLEAEAEL ------------------------------ AEA EE ELEE L AEELLEALRAA 395
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 731 ELFSK Q KGY L D E ELDYRKQA L DQANKHIL ELE AM L YDALQQ E AGAKV A ELLSE EE REK L KVAV E Q w KRQVMS EL R E RD A Q 810
Cdd:COG1196 396 AELAA Q LEE L E E AEEALLER L ERLEEELE ELE EA L AELEEE E EEEEE A LEEAA EE EAE L EEEE E A - LLELLA EL L E EA A L 474
330 340
....*....|....*....|....*....
gi 1972711911 811 ILRERM ELL QLAQQRIKE L EERI EA QKRQ 839
Cdd:COG1196 475 LEAALA ELL EELAEAAAR L LLLL EA EADY 503
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
45-841
1.59e-05
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 48.91
E-value: 1.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 45 KVSKVER EK N Q E L RQV R EHEQHKTAVL lt E L KTKLH E EKMK EL QAVR E T L L RQ H EA e LL R VIKIKDN E NQR L QALL S A L R 124
Cdd:TIGR02169 188 RLDLIID EK R Q Q L ERL R REREKAERYQ -- A L LKEKR E YEGY EL LKEK E A L E RQ K EA - IE R QLASLEE E LEK L TEEI S E L E 264
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 125 DGGP E KVK tv LL S E AKEEA K KGF E V E KVKMQQE I S EL KG ---- AK R QVE E ALTLVIQ A DK i KA A EIRSVYHLHQE EI TRI 200
Cdd:TIGR02169 265 KRLE E IEQ -- LL E E LNKKI K DLG E E E QLRVKEK I G EL EA eias LE R SIA E KERELED A EE - RL A KLEAEIDKLLA EI EEL 341
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 201 KK E C E R E IR R --- L M EE IKFKDRAVFV L ER EL GVQAGHAQRLQLQKEALD E Q L SQV - RE ADRHPGSPR R EL phaagagda 276
Cdd:TIGR02169 342 ER E I E E E RK R rdk L T EE YAELKEELED L RA EL EEVDKEFAETRDELKDYR E K L EKL k RE INELKRELD R LQ --------- 412
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 277 sdhsgspqlde KDAR R FQLKI A E L S A I I RKL E DRNAL L S EE RNELLKRVREA E SQYKP L LDKNKRLSRKNE DL SHALR R M 356
Cdd:TIGR02169 413 ----------- EELQ R LSEEL A D L N A A I AGI E AKINE L E EE KEDKALEIKKQ E WKLEQ L AADLSKYEQELY DL KEEYD R V 481
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 357 E NK L KFVTQ E NI E MRQR A GIIRRPSSLNDLDQSQDEREVDFLKLQIVEQQNLIDELSKTL E T A G ------- Y V KSVLERD 429
Cdd:TIGR02169 482 E KE L SKLQR E LA E AEAQ A RASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAI E V A A gnrlnnv V V EDDAVAK 561
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 430 KLLRFR K Q RK ---------- KM AKLPKPVVVETFF G YDEE A S -- L E S D --- GSSVS Y QTDR T DQT pctpd D D L E EG mak E 494
Cdd:TIGR02169 562 EAIELL K R RK agratflpln KM RDERRDLSILSED G VIGF A V dl V E F D pky EPAFK Y VFGD T LVV ----- E D I E AA --- R 633
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 495 ETELRF R QL T M E YQALQRAY A L lqeq V GG TLDAEREVKTREQLQ AE V QR AQA R I E D L EKA L AEQGQDMKW IE ek QA L YRR 574
Cdd:TIGR02169 634 RLMGKY R MV T L E GELFEKSG A M ---- T GG SRAPRGGILFSRSEP AE L QR LRE R L E G L KRE L SSLQSELRR IE -- NR L DEL 707
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 575 N QEL VEKIKQMETE E ARLRHEV Q DARDQN E L LE FRILE L EER E RKSPAI sfhhtpfvdg KS P L Q vyc E A E GVTDIVVAE L 654
Cdd:TIGR02169 708 S QEL SDASRKIGEI E KEIEQLE Q EEEKLK E R LE ELEED L SSL E QEIENV ---------- KS E L K --- E L E ARIEELEED L 774
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 655 M K KLDI L G D NANLTNEEQVVV IQA rtvlt LAE K IR lhfalsptlsafppkgg KWLQQ IE ETEAALQR K MVD L ES EKE LFS 734
Cdd:TIGR02169 775 H K LEEA L N D LEARLSHSRIPE IQA ----- ELS K LE ----------------- EEVSR IE ARLREIEQ K LNR L TL EKE YLE 832
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 735 K QKGY L D E ELDYR K QALDQAN K H I LE L EAMLYDALQQEAGAKV A ELLS E EEREK LK VAVEQWKR Q v MS EL RER daqi LR E 814
Cdd:TIGR02169 833 K EIQE L Q E QRIDL K EQIKSIE K E I EN L NGKKEELEEELEELEA A LRDL E SRLGD LK KERDELEA Q - LR EL ERK ---- IE E 907
810 820
....*....|....*....|....*..
gi 1972711911 815 RMELLQLAQQ R IK EL EERI EA QKRQIK 841
Cdd:TIGR02169 908 LEAQIEKKRK R LS EL KAKL EA LEEELS 934
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
284-841
2.46e-05
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 48.01
E-value: 2.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 284 Q L D E KD A RRFQ LK IA EL S A IIRK LE DRNAL L SE E RN EL LKRVR E A E SQYKP L LDKNKR L SRKN E DLSHALRRMENK L kfv 363
Cdd:COG1196 221 E L K E LE A ELLL LK LR EL E A ELEE LE AELEE L EA E LE EL EAELA E L E AELEE L RLELEE L ELEL E EAQAEEYELLAE L --- 297
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 364 tq ENI E MRQRAGII RR PSSLND L DQSQD E REV df L KLQIV E QQNLID EL SKT LE T A gyvksvlerdk LLRFRKQRKKM A K 443
Cdd:COG1196 298 -- ARL E QDIARLEE RR RELEER L EELEE E LAE -- L EEELE E LEEELE EL EEE LE E A ----------- EEELEEAEAEL A E 362
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 444 L pkpvvvetffgyd EEA S LE SDGSSVSYQTDRTDQT pctp DDD LE EGM A KE E TELRFRQ L TMEYQ AL QRAYAL L Q E QVGG 523
Cdd:COG1196 363 A ------------- EEA L LE AEAELAEAEEELEELA ---- EEL LE ALR A AA E LAAQLEE L EEAEE AL LERLER L E E ELEE 425
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 524 TLD A ER E V kt R E QLQA E VQRAQARI E DLEKALA E QGQDMKWIE E KQALYRRNQELVEKIKQMET E E A RLRHEVQD A RDQN 603
Cdd:COG1196 426 LEE A LA E L -- E E EEEE E EEALEEAA E EEAELEE E EEALLELLA E LLEEAALLEAALAELLEELA E A A ARLLLLLE A EADY 503
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 604 E LLEFRILELEERERKSPAISFHHTPFVDGKSP ------- L QVYCEAEG V T D IV VA E -------------------- LMK 656
Cdd:COG1196 504 E GFLEGVKAALLLAGLRGLAGAVAVLIGVEAAY eaaleaa L AAALQNIV V E D DE VA A aaieylkaakagratflpld KIR 583
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 657 KLDI L GDNANLTNEEQV V VIQ A RTVLTLAEK --- IRLHFALSPTLS A FPPKGGKWLQQIEETEAALQRKMVDLESEKE L F 733
Cdd:COG1196 584 ARAA L AAALARGAIGAA V DLV A SDLREADAR yyv LGDTLLGRTLVA A RLEAALRRAVTLAGRLREVTLEGEGGSAGGS L T 663
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 734 SKQKGY L DEE L DYRKQA L DQANKHIL E L E AM L YD AL QQ E AGAKVAELLS EEER EKLKVAV E Q w KRQVMSEL RE RDAQI L R 813
Cdd:COG1196 664 GGSRRE L LAA L LEAEAE L EELAERLA E E E LE L EE AL LA E EEEERELAEA EEER LEEELEE E A - LEEQLEAE RE ELLEE L L 742
570 580
....*....|....*....|....*...
gi 1972711911 814 E RM ELL QLAQQRIKELEERI E AQK R QIK 841
Cdd:COG1196 743 E EE ELL EEEALEELPEPPDL E ELE R ELE 770
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
9-593
6.95e-05
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 46.85
E-value: 6.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 9 RAKGDKAEA L AALQ A AN E DL R AK L TDIQI EL QQ E K skvskverekn Q EL RQVR E HEQHKTAV L LT EL KTK lh EE KMK E LQ 88
Cdd:COG1196 291 YELLAELAR L EQDI A RL E ER R RE L EERLE EL EE E L ----------- A EL EEEL E ELEEELEE L EE EL EEA -- EE ELE E AE 357
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 89 A VRETLLRQHEAELLRVIKIKDNENQRLQA LL S ALR dggp EKVKTVLLS E AK EEA KKGFEVEKVKMQQ E IS EL KG A KRQV 168
Cdd:COG1196 358 A ELAEAEEALLEAEAELAEAEEELEELAEE LL E ALR ---- AAAELAAQL E EL EEA EEALLERLERLEE E LE EL EE A LAEL 433
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 169 EE ALTLVIQ A DKIK A A E irsvyhlh QE E ITRIKKECEREIRR L M EE IKFKDR A VFV L ER EL GVQ A GHAQR L QLQKEALDE 248
Cdd:COG1196 434 EE EEEEEEE A LEEA A E E -------- EA E LEEEEEALLELLAE L L EE AALLEA A LAE L LE EL AEA A ARLLL L LEAEADYEG 505
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 249 Q L SQ V RE A DRHP G SPRRELPH A AGA G D asdhsgspqldek D A RRFQLKI A E L S A IIRKLEDRNALLSEERN E L LK RVREA 328
Cdd:COG1196 506 F L EG V KA A LLLA G LRGLAGAV A VLI G V ------------- E A AYEAALE A A L A A ALQNIVVEDDEVAAAAI E Y LK AAKAG 572
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 329 ESQYK PL LDKNK R LSRKNEDLSH A LRRMENKLKFVTQ E NIEMRQRA G IIRRPSS L NDLDQSQDE R EVDF L KLQIV E QQNL 408
Cdd:COG1196 573 RATFL PL DKIRA R AALAAALARG A IGAAVDLVASDLR E ADARYYVL G DTLLGRT L VAARLEAAL R RAVT L AGRLR E VTLE 652
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 409 IDEL S KTLETA G YVKSV L ERDK L LRFRKQRKKMAK L pkpvvvetffg YD EE AS LE SDGSSVSYQTDRTDQ tpctp DDDLE 488
Cdd:COG1196 653 GEGG S AGGSLT G GSRRE L LAAL L EAEAELEELAER L ----------- AE EE LE LE EALLAEEEEERELAE ----- AEEER 716
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 489 EGMAK EE TE L RFRQLTMEYQA L QRAYALLQEQVGGT L DAER E VKTR E Q L QA E VQ R AQAR IE D L EK -- A LA eqgqdmkw IE 566
Cdd:COG1196 717 LEEEL EE EA L EEQLEAEREEL L EELLEEEELLEEEA L EELP E PPDL E E L ER E LE R LERE IE A L GP vn L LA -------- IE 788
570 580
....*....|....*....|....*..
gi 1972711911 567 E KQA L YR R NQE L V E KIKQM E TEEAR L R 593
Cdd:COG1196 789 E YEE L EE R YDF L S E QREDL E EARET L E 815
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
26-256
7.48e-04
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 42.83
E-value: 7.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 26 EDLR A K L TDI Q I E LQQEKSKVSKVER E KNQE L R Q VREH E Q hkt AVLLTELKTKLH E EKMKE L Q A V retl L RQH E A E LLRV 105
Cdd:COG4942 23 AEAE A E L EQL Q Q E IAELEKELAALKK E EKAL L K Q LAAL E R --- RIAALARRIRAL E QELAA L E A E ---- L AEL E K E IAEL 95
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 106 IKIKDNENQR L QA LL S AL - R D G GPEKVKTV L LS E AKEE A kkgfevek V KMQ Q EISE L KG A K R QVE E A L TLVIQADKIKA A 184
Cdd:COG4942 96 RAELEAQKEE L AE LL R AL y R L G RQPPLALL L SP E DFLD A -------- V RRL Q YLKY L AP A R R EQA E E L RADLAELAALR A 167
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1972711911 185 E IRS vyhl HQE E ITRIKK E C E R E IRR L MEEIKFKDRAVFV LE R EL GVQ A GHAQR LQ LQK E A L DEQLSQVREA 256
Cdd:COG4942 168 E LEA ---- ERA E LEALLA E L E E E RAA L EALKAERQKLLAR LE K EL AEL A AELAE LQ QEA E E L EALIARLEAE 235
PTZ00121
PTZ00121 MAEBL; Provisional
38-601
1.07e-03
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 42.82
E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 38 E LQQEKSKVS K V E R E K N Q E LRQVR E ----- H EQHKT A VLLT E LKT K LH E E K MK E LQAVRETLLRQH E AELLRVI K I K DN E 112
Cdd:PTZ00121 1234 E AKKDAEEAK K A E E E R N N E EIRKF E earma H FARRQ A AIKA E EAR K AD E L K KA E EKKKADEAKKAE E KKKADEA K K K AE E 1313
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 113 NQRLQALLSALRDG gpe K V K TVLLSEAK EEAKK GF E VE K VKMQQEIS E LKG A KRQ v E EA LTLVIQAD K I KA AEIRSVYH l 192
Cdd:PTZ00121 1314 AKKADEAKKKAEEA --- K K K ADAAKKKA EEAKK AA E AA K AEAEAAAD E AEA A EEK - A EA AEKKKEEA K K KA DAAKKKAE - 1388
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 193 HQEEITRI KK EC E r E IRRLME E I K FKDR A VFVLER ----- E LGVQ A GH A QRLQLQKEAL DE QLSQVR EA DRHPGSPRR -- 265
Cdd:PTZ00121 1389 EKKKADEA KK KA E - E DKKKAD E L K KAAA A KKKADE akkka E EKKK A DE A KKKAEEAKKA DE AKKKAE EA KKAEEAKKK ae 1467
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 266 E LPH A AG A GDASDHSGSPQLDE K D A RRFQL K IA E LSAIIRKLEDRNALLSE E RNELLKRVRE AE SQY K PLLD K NKRLSR K 345
Cdd:PTZ00121 1468 E AKK A DE A KKKAEEAKKADEAK K K A EEAKK K AD E AKKAAEAKKKADEAKKA E EAKKADEAKK AE EAK K ADEA K KAEEKK K 1547
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 346 NED L SH A -- L RRM E N K L K f VTQENIEMRQRAGII R RPS sln DLDQSQDE R EVDFL KL QIV E QQNLID E LS K TL E tagyvk 423
Cdd:PTZ00121 1548 ADE L KK A ee L KKA E E K K K - AEEAKKAEEDKNMAL R KAE --- EAKKAEEA R IEEVM KL YEE E KKMKAE E AK K AE E ------ 1617
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 424 svl ERD K LLRFR K -- QR KK MAKLP K PVVV E TFFGYD E EASL E SDGSSVSYQTDRTDQTPCTPDDDLEE gm A K E ETELRFR 501
Cdd:PTZ00121 1618 --- AKI K AEELK K ae EE KK KVEQL K KKEA E EKKKAE E LKKA E EENKIKAAEEAKKAEEDKKKAEEAKK -- A E E DEKKAAE 1692
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 502 Q L TM E YQALQR A YA L LQEQ vggtlda ER E V K TR E Q L QAEVQRAQARI E DLE K ala E QGQ D M K WI EE kqal YRRNQ E LVE K 581
Cdd:PTZ00121 1693 A L KK E AEEAKK A EE L KKKE ------- AE E K K KA E E L KKAEEENKIKA E EAK K --- E AEE D K K KA EE ---- AKKDE E EKK K 1758
570 580
....*....|....*....|
gi 1972711911 582 I KQMET EE ARLRH E VQDARD 601
Cdd:PTZ00121 1759 I AHLKK EE EKKAE E IRKEKE 1778
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
305-619
1.74e-03
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 42.35
E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 305 R KL E DRNA L LSEER N el L K R V ---- R E A E S Q Y K P L --- LD K NK R LSRKNED L SHA -------- L RRMENK L KFVTQ E NI E 369
Cdd:TIGR02168 173 R RK E TERK L ERTRE N -- L D R L edil N E L E R Q L K S L erq AE K AE R YKELKAE L REL elallvlr L EELREE L EELQE E LK E 250
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 370 MRQRAGIIRR psslndl DQSQD E REVDF L K L QIV E QQNL I D EL S K T L ETAGYVK S V LE RD K - L LR F R KQRKKMAKLPKPV 448
Cdd:TIGR02168 251 AEEELEELTA ------- ELQEL E EKLEE L R L EVS E LEEE I E EL Q K E L YALANEI S R LE QQ K q I LR E R LANLERQLEELEA 323
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 449 VV E TFFGYDE E ASL E SDGSSVSYQTDRTDQTPC t PDDDL E EGMAK EE T E L R FRQ L TMEYQA L QRAY A L L QE Q V ggtldae 528
Cdd:TIGR02168 324 QL E ELESKLD E LAE E LAELEEKLEELKEELESL - EAELE E LEAEL EE L E S R LEE L EEQLET L RSKV A Q L EL Q I ------- 395
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 529 revktr EQ L QA E VQ R AQ AR I E D LE KALAEQG Q DMKWIEE K QALYRR n Q EL VEKIKQM E T E EAR L RH E VQDARDQN E L L EF 608
Cdd:TIGR02168 396 ------ AS L NN E IE R LE AR L E R LE DRRERLQ Q EIEELLK K LEEAEL - K EL QAELEEL E E E LEE L QE E LERLEEAL E E L RE 468
330
....*....|.
gi 1972711911 609 RIL E L E ERERK 619
Cdd:TIGR02168 469 ELE E A E QALDA 479
COG4913
COG4913 Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
494-618
1.94e-03
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain]
Cd Length: 1089
Bit Score: 41.82
E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 494 E E T E LRFRQLTMEYQ AL QRAYAL LQE Q vggt LD A EREVKTREQLQAE V QR A QAR I ED LE KA L AEQGQDMKWI ---- E EKQ 569
Cdd:COG4913 620 A E L E EELAEAEERLE AL EAELDA LQE R ---- RE A LQRLAEYSWDEID V AS A ERE I AE LE AE L ERLDASSDDL aale E QLE 695
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1972711911 570 A L YRRNQ EL V E KIKQMET E EA RL RH E VQD A RDQNEL L EF R ILEL E ERE R 618
Cdd:COG4913 696 E L EAELE EL E E ELDELKG E IG RL EK E LEQ A EEELDE L QD R LEAA E DLA R 744
COG2433
COG2433 Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
526-615
2.96e-03
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain]
Cd Length: 644
Bit Score: 41.38
E-value: 2.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 526 DA E REVKTR E -- Q L QAE V Q R AQ A RI E D LE KA L A E QGQDMKWI E EKQALY R RNQELV ---- EK I KQMET E EA RL RH E VQDA 599
Cdd:COG2433 405 ER E LTEEEE E ir R L EEQ V E R LE A EV E E LE AE L E E KDERIERL E RELSEA R SEERRE irkd RE I SRLDR E IE RL ER E LEEE 484
90
....*....|....*.
gi 1972711911 600 R DQN E L L EFRILE L E E 615
Cdd:COG2433 485 R ERI E E L KRKLER L K E 500
YhaN
COG4717 Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
486-840
7.38e-03
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain]
Cd Length: 641
Bit Score: 39.75
E-value: 7.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 486 D L E E GMA K E E TE L RFRQ L TM E YQ AL QRAY A L L Q E QVG gtl DA E REVKTREQ L QA E VQRAQ A RIED L EKA L A E QGQDMKWI 565
Cdd:COG4717 113 E L R E ELE K L E KL L QLLP L YQ E LE AL EAEL A E L P E RLE --- EL E ERLEELRE L EE E LEELE A ELAE L QEE L E E LLEQLSLA 189
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 566 E E KQA -- L YRRNQ EL VEKIKQM E T E EARLRH E VQDARDQN E L LE FRILELEER ER kspaisfhhtpfvdgksp L QVYCEA 643
Cdd:COG4717 190 T E EEL qd L AEELE EL QQRLAEL E E E LEEAQE E LEELEEEL E Q LE NELEAAALE ER ------------------ L KEARLL 251
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 644 EGVTDIVV A E L MKKLDI L GDNANLT ne EQVVVIQARTV L TLAEKI R LHFA L SPTLSAFPPKGGKWLQQI EE T E AA L QRKM 723
Cdd:COG4717 252 LLIAAALL A L L GLGGSL L SLILTIA -- GVLFLVLGLLA L LFLLLA R EKAS L GKEAEELQALPALEELEE EE L E EL L AALG 329
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 724 VDLESEK E LFSKQKGYLD E ELDYRKQ A LDQANKHI LE LEAMLYD AL QQ EAG AKVA E L L SE ----- EE REK LK VAV E QWKR 798
Cdd:COG4717 330 LPPDLSP E ELLELLDRIE E LQELLRE A EELEEELQ LE ELEQEIA AL LA EAG VEDE E E L RA aleqa EE YQE LK EEL E ELEE 409
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1972711911 799 Q VMSE L R E R ---- D A QILR E RM E L L QLAQQRIK ELEE RI E AQKRQI 840
Cdd:COG4717 410 Q LEEL L G E L eell E A LDEE E LE E E L EELEEELE ELEE EL E ELREEL 455
COG4913
COG4913 Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
138-333
9.76e-03
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain]
Cd Length: 1089
Bit Score: 39.51
E-value: 9.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 138 E A K E EAKKGF E V E KVKMQQEISE L KGAKRQVE E ALTLVIQADKIKAA EI RSVYH lh QE EI TRIKK E C ER ------ EIRR L 211
Cdd:COG4913 613 A A L E AELAEL E E E LAEAEERLEA L EAELDALQ E RREALQRLAEYSWD EI DVASA -- ER EI AELEA E L ER ldassd DLAA L 690
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711911 212 M E EIKFKDRAVFV LE R EL GVQA G HAQ RL QLQK E ALD E Q L SQVREA drhpgsprrelphaag AGD A S D HSGSPQLDEKDA R 291
Cdd:COG4913 691 E E QLEELEAELEE LE E EL DELK G EIG RL EKEL E QAE E E L DELQDR ---------------- LEA A E D LARLELRALLEE R 754
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1972711911 292 RFQLKIAELSAII R K - LE D R NAL L SEER N ELLKRVRE A ESQYK 333
Cdd:COG4913 755 FAAALGDAVEREL R E n LE E R IDA L RARL N RAEEELER A MRAFN 797
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
