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Conserved domains on  [gi|217330586|ref|NP_001136092|]
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receptor for retinol uptake STRA6 isoform c [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RBP_receptor super family cl20677
Retinol binding protein receptor; Proteins in this family function as retinol binding protein ...
 41-136 6.86e-22

Retinol binding protein receptor; Proteins in this family function as retinol binding protein receptors.


The actual alignment was detected with superfamily member pfam14752:

Pssm-ID: 464298  Cd Length: 603  Bit Score: 90.79  E-value: 6.86e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217330586   41 PSCHTSIPPGLYHACLASLSILVLLLLAMLVRRRQLWPDCVRGRPGLPSPVDFLAGDRPRAVPAAVFMVLLSSLCLLLPD 120
Cdd:pfam14752   1 PPCDPTVDPGLFHHCSLIPSLLILLLLSFLQRRRKLCQGCLRGRPGLLSPVDFLGTTSNRWSYGAVFGALFSSLCLLLFS 80

                          90
                  ....*....|....*.
gi 217330586  121 EDALPFLTLASAPSQD 136
Cdd:pfam14752  81 EDPLPFTVPTWASSKA 96
 
Name Accession Description Interval E-value
RBP_receptor pfam14752
Retinol binding protein receptor; Proteins in this family function as retinol binding protein ...
 41-136 6.86e-22

Retinol binding protein receptor; Proteins in this family function as retinol binding protein receptors.


Pssm-ID: 464298  Cd Length: 603  Bit Score: 90.79  E-value: 6.86e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217330586   41 PSCHTSIPPGLYHACLASLSILVLLLLAMLVRRRQLWPDCVRGRPGLPSPVDFLAGDRPRAVPAAVFMVLLSSLCLLLPD 120
Cdd:pfam14752   1 PPCDPTVDPGLFHHCSLIPSLLILLLLSFLQRRRKLCQGCLRGRPGLLSPVDFLGTTSNRWSYGAVFGALFSSLCLLLFS 80

                          90
                  ....*....|....*.
gi 217330586  121 EDALPFLTLASAPSQD 136
Cdd:pfam14752  81 EDPLPFTVPTWASSKA 96
 
Name Accession Description Interval E-value
RBP_receptor pfam14752
Retinol binding protein receptor; Proteins in this family function as retinol binding protein ...
 41-136 6.86e-22

Retinol binding protein receptor; Proteins in this family function as retinol binding protein receptors.


Pssm-ID: 464298  Cd Length: 603  Bit Score: 90.79  E-value: 6.86e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217330586   41 PSCHTSIPPGLYHACLASLSILVLLLLAMLVRRRQLWPDCVRGRPGLPSPVDFLAGDRPRAVPAAVFMVLLSSLCLLLPD 120
Cdd:pfam14752   1 PPCDPTVDPGLFHHCSLIPSLLILLLLSFLQRRRKLCQGCLRGRPGLLSPVDFLGTTSNRWSYGAVFGALFSSLCLLLFS 80

                          90
                  ....*....|....*.
gi 217330586  121 EDALPFLTLASAPSQD 136
Cdd:pfam14752  81 EDPLPFTVPTWASSKA 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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