|
Name |
Accession |
Description |
Interval |
E-value |
| Rad51D |
cd19489 |
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
114-318 |
1.63e-82 |
|
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51D, together with the other RAD51 paralogs, RAD51B, RAD51C, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410897 [Multi-domain] Cd Length: 209 Bit Score: 249.48 E-value: 1.63e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 114 DAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAF 193
Cdd:cd19489 1 GGGLRTGEITELVGESSSGKTQLCLTAAANVASRSGQNVLYIDTKSSFSARRLAQILKSRAQDAEEIDKALQRIRVVRVF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 194 DIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQR-EGLALMMQLARELKTLARDLGMAVVVTNHIT 272
Cdd:cd19489 81 DPYELLDLLEELRNTLSQQQENLYSRLKLVIIDSLSALISPLLGGSKHsEGHALLASLARLLKKLAAEYQIAVLVTNLTV 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 217272816 273 RDRDSG---RLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKS 318
Cdd:cd19489 161 RGGDGGqqgSTKPALGEYWESVPSTRLLLSRDENDPEESGVCTATLLKS 209
|
|
| radB |
PRK09361 |
DNA repair and recombination protein RadB; Provisional |
109-289 |
1.91e-16 |
|
DNA repair and recombination protein RadB; Provisional
Pssm-ID: 236482 [Multi-domain] Cd Length: 225 Bit Score: 77.21 E-value: 1.91e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 109 LDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVA-HGlqQNVLYVDSNgGLTASRLLQLLqaktqdEEEQAEALRRI 187
Cdd:PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAkNG--KKVIYIDTE-GLSPERFKQIA------GEDFEELLSNI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 188 QVVHAFDIFQMLDVLQELRGTVAQQV--------TGssgtvkvvvvdsvtavVSPLLGGQQREGLALMMQLARELKTL-- 257
Cdd:PRK09361 83 IIFEPSSFEEQSEAIRKAEKLAKENVglivldsaTS----------------LYRLELEDEEDNSKLNRELGRQLTHLlk 146
|
170 180 190
....*....|....*....|....*....|....*.
gi 217272816 258 -ARDLGMAVVVTNHITRDRDSGRLKPALGRS---WS 289
Cdd:PRK09361 147 lARKHDLAVVITNQVYSDIDSDGLRPLGGHTlehWS 182
|
|
| recomb_radA |
TIGR02236 |
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA ... |
105-335 |
8.67e-14 |
|
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 131290 [Multi-domain] Cd Length: 310 Bit Score: 70.93 E-value: 8.67e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 105 STSRLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAH-----GLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEe 179
Cdd:TIGR02236 80 GSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLpeekgGLGGKAVYIDTENTFRPERIMQMAEARGLDPD- 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 180 qaEALRRIQVVHAFDI-FQML------DVLQELRGTVAQQVTGSsgtvkvvvvdSVTAVVSPLLGgqqREGLALMMQ-LA 251
Cdd:TIGR02236 159 --EVLKNIYVARAYNSnHQMLlvekaeDLIKELNNPVKLLIVDS----------LTSHFRAEYVG---RGALAERQQkLN 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 252 RELKTLAR--DL-GMAVVVTNHITRDRDS---GRLKPALGRSWSFVPSTRILLDTiegagASGGRRMACLAKSSRQPTGf 325
Cdd:TIGR02236 224 KHLHDLLRlaDLyNAAVVVTNQVMARPDAffgDPTRPIGGHILGHAATFRVYLRK-----GKGDKRIARLVDSPHLPEG- 297
|
250
....*....|
gi 217272816 326 QEMVDIGTWG 335
Cdd:TIGR02236 298 EAVFRITEKG 307
|
|
| Rad51 |
pfam08423 |
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
109-298 |
1.44e-12 |
|
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.
Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 66.56 E-value: 1.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 109 LDKLLDAGLYTGEVTEIVGGPGSGKTQVC--LCMAANVA---HGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEeqaEA 183
Cdd:pfam08423 26 LDKLLGGGIETGSITEIFGEFRTGKTQLChtLCVTCQLPlemGGGEGKALYIDTEGTFRPERLVAIAERYGLDPE---DV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 184 LRRIQVVHAFDIFQMLDVLQELRGTVAQQ-----VTGS---------SGtvkvvvvdsvtavVSPLLGGQQREGlalmmQ 249
Cdd:pfam08423 103 LDNVAYARAYNSEHQMQLLQQAAAMMSESrfallIVDSatalyrtdfSG-------------RGELAERQQHLA-----K 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 217272816 250 LARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPALGRSWSFVPSTRILL 298
Cdd:pfam08423 165 FLRTLQRLADEFGVAVVITNQVVAQVDGAAGmfsgdpkKPIGGHIMAHASTTRLSL 220
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
104-155 |
2.64e-04 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 41.82 E-value: 2.64e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 217272816 104 VST--SRLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANvahGLQQN--VLYV 155
Cdd:COG0467 2 VPTgiPGLDELLGGGLPRGSSTLLSGPPGTGKTTLALQFLAE---GLRRGekGLYV 54
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Rad51D |
cd19489 |
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
114-318 |
1.63e-82 |
|
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51D, together with the other RAD51 paralogs, RAD51B, RAD51C, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410897 [Multi-domain] Cd Length: 209 Bit Score: 249.48 E-value: 1.63e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 114 DAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAF 193
Cdd:cd19489 1 GGGLRTGEITELVGESSSGKTQLCLTAAANVASRSGQNVLYIDTKSSFSARRLAQILKSRAQDAEEIDKALQRIRVVRVF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 194 DIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQR-EGLALMMQLARELKTLARDLGMAVVVTNHIT 272
Cdd:cd19489 81 DPYELLDLLEELRNTLSQQQENLYSRLKLVIIDSLSALISPLLGGSKHsEGHALLASLARLLKKLAAEYQIAVLVTNLTV 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 217272816 273 RDRDSG---RLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKS 318
Cdd:cd19489 161 RGGDGGqqgSTKPALGEYWESVPSTRLLLSRDENDPEESGVCTATLLKS 209
|
|
| RecA-like |
cd01393 |
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
120-300 |
9.50e-44 |
|
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs RadA and RadB.
Pssm-ID: 410881 [Multi-domain] Cd Length: 185 Bit Score: 149.04 E-value: 9.50e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 120 GEVTEIVGGPGSGKTQVCLCMAANVAHgLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDifqml 199
Cdd:cd01393 1 GKITEIYGPPGSGKTQLALQLAANALL-LGGGVVWIDTEGAFPPSRLVQILEASPSSELELAEALSRLLYFRPPD----- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 200 DVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQ------QREGLALMMQLARELKTLARDLGMAVVVTNHITR 273
Cdd:cd01393 75 TLAHLLALDSLPESLFPPPNTSLVVVDSVSALFRKAFPRGgdgdssSSLRARLLSQLARALQKLAAQFNLAVVVTNQVTT 154
|
170 180 190
....*....|....*....|....*....|.
gi 217272816 274 DRDSG----RLKPALGRSWSFVPSTRILLDT 300
Cdd:cd01393 155 KIRGGsgasLVPPALGNTWEHSVSTRLLLYR 185
|
|
| Rad51B |
cd19493 |
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
110-319 |
9.81e-24 |
|
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51B, together with the other RAD51 paralogs, RAD51C, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410901 [Multi-domain] Cd Length: 222 Bit Score: 97.39 E-value: 9.81e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 110 DKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVA-----HGLQQNVLYVDSNGGLTASRLLQLLQAKT--------QD 176
Cdd:cd19493 1 DTALAGGLPLGAITEITGASGSGKTQFALTLASSAAmparkGGLDGGVLYIDTESKFSAERLAEIAEARFpeafsgfmEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 177 EEEQAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLAlmmQLARELKT 256
Cdd:cd19493 81 NERAEEMLKRVAVVRVTTLAQLLERLPNLEEHILSSGVRLVVIDSIAALVRREFGGSDGEVTERHNALA---REASSLKR 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 217272816 257 LARDLGMAVVVTNHITR-----DRDSGRLKPALGRSWSFVPSTRILLDtiegAGASGGRRMACLAKSS 319
Cdd:cd19493 158 LAEEFRIAVLVTNQATThfgdaGDGSSGVTAALGDAWAHAVNTRLRLE----RCLLQLRRVLEIVKSP 221
|
|
| Rad51C |
cd19492 |
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
120-319 |
7.18e-20 |
|
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51C, together with the other RAD51 paralogs, RAD51B, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Additionally, RAD51C acts as a mediator in the early steps of DNA damage signaling.
Pssm-ID: 410900 [Multi-domain] Cd Length: 172 Bit Score: 85.35 E-value: 7.18e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 120 GEVTEIVGGPGSGKTQVCLCMAANV-----AHGLQQNVLYVDSNGG-------------LTAsrLLQLLQAKTQDEEEQa 181
Cdd:cd19492 1 GKITEICGVPGVGKTQLCMQLAVNVqipkcFGGLAGEAIYIDTEGSfnihyfrvhdyveLLA--LINSLPKFLEDHPKV- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 182 ealrRIQVVH--AFDIFQMLDVLqelrgtvaqqvtgssgtvkvvvvdsvtavvspllgGQQREglaLMMQLARELKTLAR 259
Cdd:cd19492 78 ----KLIVVDsiAFPFRHDFDDL-----------------------------------AQRTR---LLNGLAQLLHSLAR 115
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 217272816 260 DLGMAVVVTNHIT---RDRDSGRLKPALGRSWSFVPSTRILLdtiegaGASGGRRMACLAKSS 319
Cdd:cd19492 116 QHNLAVVLTNQVTtkiSEDGQSQLVPALGESWSHACTTRLFL------TWDEKQRFAHLYKSP 172
|
|
| radB |
PRK09361 |
DNA repair and recombination protein RadB; Provisional |
109-289 |
1.91e-16 |
|
DNA repair and recombination protein RadB; Provisional
Pssm-ID: 236482 [Multi-domain] Cd Length: 225 Bit Score: 77.21 E-value: 1.91e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 109 LDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVA-HGlqQNVLYVDSNgGLTASRLLQLLqaktqdEEEQAEALRRI 187
Cdd:PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAkNG--KKVIYIDTE-GLSPERFKQIA------GEDFEELLSNI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 188 QVVHAFDIFQMLDVLQELRGTVAQQV--------TGssgtvkvvvvdsvtavVSPLLGGQQREGLALMMQLARELKTL-- 257
Cdd:PRK09361 83 IIFEPSSFEEQSEAIRKAEKLAKENVglivldsaTS----------------LYRLELEDEEDNSKLNRELGRQLTHLlk 146
|
170 180 190
....*....|....*....|....*....|....*.
gi 217272816 258 -ARDLGMAVVVTNHITRDRDSGRLKPALGRS---WS 289
Cdd:PRK09361 147 lARKHDLAVVITNQVYSDIDSDGLRPLGGHTlehWS 182
|
|
| archRadB |
cd01394 |
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional ... |
105-331 |
2.40e-15 |
|
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional homologue to the bacterial RecA. The precise function of RadB is unclear.
Pssm-ID: 410882 [Multi-domain] Cd Length: 216 Bit Score: 73.89 E-value: 2.40e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 105 STSRLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVA-HGLqqNVLYVDSNgGLTASRLLQLLqaktqdEEEQAEA 183
Cdd:cd01394 4 GSKSLDSLLGGGVERGTITQIYGPPGSGKTNICLQLAVEAAkQGK--KVVYIDTE-GLSPERFQQIA------GERFESI 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 184 LRRIQVVHAFDIFQMLDVLQELRGTVAQQVTG----SSGTVKVVVVDSVTAVVSPLLGGQqregLALMMQLARElktlaR 259
Cdd:cd01394 75 ASNIIVFEPYSFDEQGVAIQEAEKLLKSDKVDlvvvDSATALYRLELGDDSEANRELSRQ----MSKLLSIARK-----Y 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 217272816 260 DLgmAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDTIEgagasGGRRMACLAKSSRQPTGFQEMVDI 331
Cdd:cd01394 146 DI--PVVITNQVYSDIDDDRLKPVGGTLLEHWSKAIIRLEKSP-----PGLRRATLEKHRSRPEGQSAGFRI 210
|
|
| XRCC3 |
cd19491 |
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells ... |
109-298 |
7.38e-15 |
|
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells 3) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC3, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410899 [Multi-domain] Cd Length: 250 Bit Score: 73.09 E-value: 7.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 109 LDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANV-----AHGLQQNVLYVDSNGGLTASRLLQLLQ--AKTQDEEEQA 181
Cdd:cd19491 1 LDELLGGGIPVGGITEIAGESGAGKTQLCLQLALTVqlpreLGGLGGGAVYICTESSFPSKRLQQLASslPKRYHLEKAK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 182 EALRRIQVVHAFDIFQMLDVLQelrgtvaQQVtgssgtvkvvvvdsvtavvsPLLGGQQREGL----------------- 244
Cdd:cd19491 81 NFLDNIFVEHVADLETLEHCLN-------YQL--------------------PALLERGPIRLvvidsiaalfrsefdts 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 245 --------ALMMQLARELKTLARDLGMAVVVTNHIT-------------------------RDRDSGRLKPALGRSWSFV 291
Cdd:cd19491 134 rsdlveraKYLRRLADHLKRLADKYNLAVVVVNQVTdrfdsssdasglgvldylsqfssfsGGVSGNRKVPALGLTWANL 213
|
....*..
gi 217272816 292 PSTRILL 298
Cdd:cd19491 214 VNTRLML 220
|
|
| recomb_radA |
TIGR02236 |
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA ... |
105-335 |
8.67e-14 |
|
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 131290 [Multi-domain] Cd Length: 310 Bit Score: 70.93 E-value: 8.67e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 105 STSRLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAH-----GLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEe 179
Cdd:TIGR02236 80 GSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLpeekgGLGGKAVYIDTENTFRPERIMQMAEARGLDPD- 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 180 qaEALRRIQVVHAFDI-FQML------DVLQELRGTVAQQVTGSsgtvkvvvvdSVTAVVSPLLGgqqREGLALMMQ-LA 251
Cdd:TIGR02236 159 --EVLKNIYVARAYNSnHQMLlvekaeDLIKELNNPVKLLIVDS----------LTSHFRAEYVG---RGALAERQQkLN 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 252 RELKTLAR--DL-GMAVVVTNHITRDRDS---GRLKPALGRSWSFVPSTRILLDTiegagASGGRRMACLAKSSRQPTGf 325
Cdd:TIGR02236 224 KHLHDLLRlaDLyNAAVVVTNQVMARPDAffgDPTRPIGGHILGHAATFRVYLRK-----GKGDKRIARLVDSPHLPEG- 297
|
250
....*....|
gi 217272816 326 QEMVDIGTWG 335
Cdd:TIGR02236 298 EAVFRITEKG 307
|
|
| archRadA |
cd19515 |
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a ... |
104-335 |
4.05e-13 |
|
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a homolog of Rad51. RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR)
Pssm-ID: 410923 [Multi-domain] Cd Length: 233 Bit Score: 67.77 E-value: 4.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 104 VSTSRLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVA-----HGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEE 178
Cdd:cd19515 3 TGSKELDKLLGGGIETQAITEVFGEFGSGKTQLCHQLAVNVQlppeeGGLNGKAVYIDTENTFRPERIMQMAKALGLDPD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 179 eqaEALRRIQVVHAFDI-FQML------DVLQELRGT---VAQQVTGssgtvkvvvvdsvtAVVSPLLGgqqREGLALMM 248
Cdd:cd19515 83 ---EVLDNIYVARAYNSnHQMLlvekaeDLIKEGNNIkllIVDSLTS--------------HFRAEYVG---RGTLAERQ 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 249 Q-LARELKTLAR--DL-GMAVVVTNHITRDRDS---GRLKPALGRSWSFVPSTRILLDTiegagASGGRRMACLAKSSRQ 321
Cdd:cd19515 143 QkLNKHLHDLHRlaDLyNIAVLVTNQVMAKPDAffgDPTQAIGGHILGHAATFRVYLRK-----GKGGKRIARLVDSPHL 217
|
250
....*....|....
gi 217272816 322 PTGfQEMVDIGTWG 335
Cdd:cd19515 218 PEG-EAVFRITEKG 230
|
|
| Rad51 |
pfam08423 |
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
109-298 |
1.44e-12 |
|
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.
Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 66.56 E-value: 1.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 109 LDKLLDAGLYTGEVTEIVGGPGSGKTQVC--LCMAANVA---HGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEeqaEA 183
Cdd:pfam08423 26 LDKLLGGGIETGSITEIFGEFRTGKTQLChtLCVTCQLPlemGGGEGKALYIDTEGTFRPERLVAIAERYGLDPE---DV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 184 LRRIQVVHAFDIFQMLDVLQELRGTVAQQ-----VTGS---------SGtvkvvvvdsvtavVSPLLGGQQREGlalmmQ 249
Cdd:pfam08423 103 LDNVAYARAYNSEHQMQLLQQAAAMMSESrfallIVDSatalyrtdfSG-------------RGELAERQQHLA-----K 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 217272816 250 LARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPALGRSWSFVPSTRILL 298
Cdd:pfam08423 165 FLRTLQRLADEFGVAVVITNQVVAQVDGAAGmfsgdpkKPIGGHIMAHASTTRLSL 220
|
|
| radA |
PRK04301 |
DNA repair and recombination protein RadA; Validated |
109-205 |
1.86e-11 |
|
DNA repair and recombination protein RadA; Validated
Pssm-ID: 235273 [Multi-domain] Cd Length: 317 Bit Score: 64.13 E-value: 1.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 109 LDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANV-----AHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEeqaEA 183
Cdd:PRK04301 91 LDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVqlpeeKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPD---EV 167
|
90 100
....*....|....*....|....*
gi 217272816 184 LRRIQVVHAFDI-FQML--DVLQEL 205
Cdd:PRK04301 168 LDNIHVARAYNSdHQMLlaEKAEEL 192
|
|
| Rad51_DMC1_archRadA |
cd01123 |
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic ... |
109-324 |
2.94e-10 |
|
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal protein RadA. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Pssm-ID: 410868 [Multi-domain] Cd Length: 234 Bit Score: 59.47 E-value: 2.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 109 LDKLLDAGLYTGEVTEIVGGPGSGKTQVC--LCMAANV---AHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEeqaEA 183
Cdd:cd01123 8 LDKLLGGGIETGSITEMFGEFRTGKTQLChtLAVTCQLpidRGGGEGKAIYIDTEGTFRPERLRAIAQRFGLDPD---DV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 184 LRRIQVVHAFDIFQMLDVLQElrgtvAQQVTGSSGTVKVVVVDSVTAVVSPLLG-GQQREGLALMMQLARELKTLARDLG 262
Cdd:cd01123 85 LDNVAYARAFNSDHQTQLLDQ-----AAAMMVESRFKLLIVDSATALYRTDYSGrGELSARQMHLAKFLRMLQRLADEFG 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 217272816 263 MAVVVTNHITRDRDSGRL------KPALGRSWSFVPSTRILLDTiegagASGGRRMACLAKSSRQPTG 324
Cdd:cd01123 160 VAVVVTNQVVAQVDGAMMfaadpkKPIGGNILAHASTTRLYLRK-----GRGETRICKIYDSPCLPEA 222
|
|
| XRCC2 |
cd19490 |
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells ... |
120-205 |
4.55e-10 |
|
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells 2) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC2, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC3, helps recruit RAD51 to the break site.
Pssm-ID: 410898 [Multi-domain] Cd Length: 226 Bit Score: 58.90 E-value: 4.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 120 GEVTEIVGGPGSGKTQVCLCMAAN----------VAHGLQQNVLYVDSNGGLTASRLLQLLQAK--------------TQ 175
Cdd:cd19490 1 GDVIEITGPSGSGKTELLYHLAARcilpsswggvPLGGLEAAVVFIDTDGRFDILRLRSILEARiraaiqaanssddeED 80
|
90 100 110
....*....|....*....|....*....|
gi 217272816 176 DEEEQAEALRRIQVVHAFDIFQMLDVLQEL 205
Cdd:cd19490 81 VEEIARECLQRLHIFRCHSSLQLLATLLSL 110
|
|
| PLN03186 |
PLN03186 |
DNA repair protein RAD51 homolog; Provisional |
106-298 |
2.70e-08 |
|
DNA repair protein RAD51 homolog; Provisional
Pssm-ID: 178728 [Multi-domain] Cd Length: 342 Bit Score: 54.74 E-value: 2.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 106 TSRLDKLLDAGLYTGEVTEIVGGPGSGKTQVC--LCMAANVAH---GLQQNVLYVDSNGGLTASRLLQLLQ--------- 171
Cdd:PLN03186 109 SRELDKILEGGIETGSITEIYGEFRTGKTQLChtLCVTCQLPLdqgGGEGKAMYIDTEGTFRPQRLIQIAErfglngadv 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 172 ------AKTQDEEEQAEALRRIQVVHAFDIFQMLDVlqelRGTVAQQVTGSSGtvkvvvvdsvtavvspllggqQREGLA 245
Cdd:PLN03186 189 lenvayARAYNTDHQSELLLEAASMMAETRFALMIV----DSATALYRTEFSG---------------------RGELSA 243
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 217272816 246 LMMQLARELKTLAR---DLGMAVVVTNHITRDRDSG------RLKPALGRSWSFVPSTRILL 298
Cdd:PLN03186 244 RQMHLGKFLRSLQRladEFGVAVVITNQVVAQVDGSaffagpQLKPIGGNIMAHASTTRLAL 305
|
|
| recomb_RAD51 |
TIGR02239 |
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein ... |
106-276 |
5.28e-08 |
|
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Pssm-ID: 274048 [Multi-domain] Cd Length: 316 Bit Score: 53.58 E-value: 5.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 106 TSRLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQQ-----NVLYVDSNGGLTASRLLQLLQAKTQDEEeq 180
Cdd:TIGR02239 82 SKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQgggegKALYIDTEGTFRPERLLAIAERYGLNPE-- 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 181 aEALRRIQVVHAFDIFQMLDVLQELRGTVAQQ----VTGSSGTVKVVVVDSVTAVVSpllggqqreglALMMQLARELKT 256
Cdd:TIGR02239 160 -DVLDNVAYARAYNTDHQLQLLQQAAAMMSESrfalLIVDSATALYRTDFSGRGELS-----------ARQMHLARFLRS 227
|
170 180
....*....|....*....|...
gi 217272816 257 LAR---DLGMAVVVTNHITRDRD 276
Cdd:TIGR02239 228 LQRladEFGVAVVITNQVVAQVD 250
|
|
| Rad51 |
cd19513 |
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous ... |
109-278 |
1.05e-07 |
|
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51 is recruited to the break site with the help of its paralogs, RAD51D, RAD51B, RAD51C, XRCC3, and XRCC2, where it forms long helical polymers which wrap around the ssDNA tail at the break which leads to pairing and strand invasion.
Pssm-ID: 410921 [Multi-domain] Cd Length: 235 Bit Score: 51.93 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 109 LDKLLDAGLYTGEVTEIVGGPGSGKTQVC--LCMAANVA---HGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEeqaEA 183
Cdd:cd19513 8 LDKLLGGGIETGSITELFGEFRTGKTQLChtLAVTCQLPidqGGGEGKALYIDTEGTFRPERLLAIAERYGLNGE---DV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 184 LRRIQVVHAFDIFQMLDVLQELRGTVAQQ----VTGSSGTVKVVVVDSVTAVVSpllggqqreglALMMQLARELKTLAR 259
Cdd:cd19513 85 LDNVAYARAYNTDHQMQLLIQASAMMAESryalLIVDSATALYRTDYSGRGELS-----------ARQMHLAKFLRMLQR 153
|
170 180
....*....|....*....|..
gi 217272816 260 ---DLGMAVVVTNHITRDRDSG 278
Cdd:cd19513 154 ladEFGVAVVITNQVVAQVDGA 175
|
|
| PTZ00035 |
PTZ00035 |
Rad51 protein; Provisional |
107-278 |
6.40e-07 |
|
Rad51 protein; Provisional
Pssm-ID: 185407 [Multi-domain] Cd Length: 337 Bit Score: 50.38 E-value: 6.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 107 SRLDKLLDAGLYTGEVTEIVGGPGSGKTQVC--LCMAA--NVAH-GLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEeqa 181
Cdd:PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLChtLCVTCqlPIEQgGGEGKVLYIDTEGTFRPERIVQIAERFGLDPE--- 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 182 EALRRIQVVHAFDIFQMLDVLQELRGTVAQQ-----VTGS---------SGtvkvvvvdsvtavVSPLLGGQQRegLALM 247
Cdd:PTZ00035 182 DVLDNIAYARAYNHEHQMQLLSQAAAKMAEErfallIVDSatalfrvdySG-------------RGELAERQQH--LGKF 246
|
170 180 190
....*....|....*....|....*....|.
gi 217272816 248 MqlaRELKTLARDLGMAVVVTNHITRDRDSG 278
Cdd:PTZ00035 247 L---RALQKLADEFNVAVVITNQVMADVDGA 274
|
|
| DMC1 |
cd19514 |
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in ... |
104-298 |
9.69e-05 |
|
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in meiosis. It assembles at the sites of programmed DNA double-strand breaks and carries out a search for allelic DNA sequences located on homologous chromatids. It forms octameric rings.
Pssm-ID: 410922 [Multi-domain] Cd Length: 236 Bit Score: 43.11 E-value: 9.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 104 VST--SRLDKLLDAGLYTGEVTEIVGGPGSGKTQVC--LCMAANVAH---GLQQNVLYVDSNGGLTASRLLQLLQAKTQD 176
Cdd:cd19514 1 ISTgsTELDKLLGGGIESMSITEVFGEFRTGKTQLShtLCVTAQLPGsmgGGGGKVAYIDTEGTFRPDRIRPIAERFGVD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 177 eeeQAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGS---------------SGtvkvvvvdsvtavVSPLLGGQQR 241
Cdd:cd19514 81 ---HDAVLDNILYARAYTSEHQMELLDYVAAKFHEEAVFRlliidsimalfrvdfSG-------------RGELAERQQK 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 217272816 242 egLALMMQlarELKTLARDLGMAVVVTNHITRDRDSGRL------KPALGRSWSFVPSTRILL 298
Cdd:cd19514 145 --LAQMLS---RLQKISEEYNVAVFITNQVTADPGAAMTfqadpkKPIGGHILAHASTTRISL 202
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
104-155 |
2.64e-04 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 41.82 E-value: 2.64e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 217272816 104 VST--SRLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANvahGLQQN--VLYV 155
Cdd:COG0467 2 VPTgiPGLDELLGGGLPRGSSTLLSGPPGTGKTTLALQFLAE---GLRRGekGLYV 54
|
|
| recomb_DMC1 |
TIGR02238 |
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA ... |
109-298 |
6.89e-04 |
|
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Pssm-ID: 131292 [Multi-domain] Cd Length: 313 Bit Score: 40.92 E-value: 6.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 109 LDKLLDAGLYTGEVTEIVGGPGSGKTQVC--LCMAANVAH---GLQQNVLYVDSNGGLTASRLLQL-------------- 169
Cdd:TIGR02238 85 LDGILGGGIESMSITEVFGEFRCGKTQLShtLCVTAQLPRemgGGNGKVAYIDTEGTFRPDRIRAIaerfgvdpdavldn 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 170 -LQAKTQDEEEQAEALRRIQVVHAFDIFQML--DVLQEL-------RGTVAQQvtgssgtvkvvvvdsvtavvspllggQ 239
Cdd:TIGR02238 165 iLYARAYTSEHQMELLDYLAAKFSEEPFRLLivDSIMALfrvdfsgRGELSER--------------------------Q 218
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 217272816 240 QRegLALMMQlarELKTLARDLGMAVVVTNHITRDRD------SGRLKPALGRSWSFVPSTRILL 298
Cdd:TIGR02238 219 QK--LAQMLS---RLNKISEEFNVAVFVTNQVQADPGatmtfiADPKKPIGGHVLAHASTTRILL 278
|
|
| RecA |
COG0468 |
RecA/RadA recombinase [Replication, recombination and repair]; |
103-144 |
1.03e-03 |
|
RecA/RadA recombinase [Replication, recombination and repair];
Pssm-ID: 440236 [Multi-domain] Cd Length: 351 Bit Score: 40.54 E-value: 1.03e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 217272816 103 AVST--SRLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCMAANV 144
Cdd:COG0468 43 VISTgsLALDIALgVGGLPRGRIVEIYGPESSGKTTLALHAIAEA 87
|
|
| RadA_SMS_N |
cd01121 |
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a ... |
109-274 |
3.71e-03 |
|
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a role in recombination and recombinational repair of DNA damaged by UV radiation, X-rays, and chemical agent and is responsible for the stabilization or processing of branched DNA molecules.
Pssm-ID: 410866 [Multi-domain] Cd Length: 268 Bit Score: 38.67 E-value: 3.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 109 LDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAhGLQQNVLYV---DSNG--GLTASRllqlLQAKTQDeeeqaea 183
Cdd:cd01121 71 LDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA-QRGGKVLYVsgeESLSqiKLRAER----LGLGSDN------- 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 184 lrrIQVVHAFDIFQMLDVLQELRGTVA----------QQVTGSSGTVKvvvvdsvtavvspllggQQREGLALMMQLARE 253
Cdd:cd01121 139 ---LYLLAETNLEAILAEIEELKPSLVvidsiqtvysPELTSSPGSVS-----------------QVRECAAELLRLAKE 198
|
170 180
....*....|....*....|.
gi 217272816 254 lktlardLGMAVVVTNHITRD 274
Cdd:cd01121 199 -------TGIPVFLVGHVTKD 212
|
|
| AAA_25 |
pfam13481 |
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins. |
90-179 |
3.97e-03 |
|
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins.
Pssm-ID: 463892 [Multi-domain] Cd Length: 193 Bit Score: 37.75 E-value: 3.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 90 DGLSLNAFDERGTAVSTSRLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGL----------QQNVLYVDSNG 159
Cdd:pfam13481 3 EPLELLDVLADGLAAPPPPRRWLIKGLLPAGGLGLLAGAPGTGKTTLALDLAAAVATGKpwlggprvpeQGKVLYVSAEG 82
|
90 100
....*....|....*....|..
gi 217272816 160 G--LTASRLLQLLQAKTQDEEE 179
Cdd:pfam13481 83 PadELRRRLRAAGADLDLPARL 104
|
|
| PLN03187 |
PLN03187 |
meiotic recombination protein DMC1 homolog; Provisional |
109-212 |
5.06e-03 |
|
meiotic recombination protein DMC1 homolog; Provisional
Pssm-ID: 215620 [Multi-domain] Cd Length: 344 Bit Score: 38.22 E-value: 5.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272816 109 LDKLLDAGLYTGEVTEIVGGPGSGKTQVC--LCMAANVA---HGLQQNVLYVDSNGGLTASRLLQLLQAKTQDeeeqAEA 183
Cdd:PLN03187 115 LDELLGGGIETRCITEAFGEFRSGKTQLAhtLCVTTQLPtemGGGNGKVAYIDTEGTFRPDRIVPIAERFGMD----ADA 190
|
90 100 110
....*....|....*....|....*....|
gi 217272816 184 -LRRIQVVHAFDIFQMLDVLQELRGTVAQQ 212
Cdd:PLN03187 191 vLDNIIYARAYTYEHQYNLLLGLAAKMAEE 220
|
|
| ATPase |
pfam06745 |
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and ... |
109-155 |
8.85e-03 |
|
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and eukaryotes. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Pssm-ID: 429095 [Multi-domain] Cd Length: 231 Bit Score: 37.23 E-value: 8.85e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 217272816 109 LDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYV 155
Cdd:pfam06745 8 LDEILKGGFPEGRVVLITGGPGTGKTIFGLQFLYNGALKYGEPGVFV 54
|
|
| |
