|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
99-688 |
5.20e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 90.00 E-value: 5.20e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 99 ALNELLLRKEEEWRALQAHRTQLQEAALQDtrsQLEEAQGKLRCLQEDfvynlqvLEERDLELERYDAAFAQAREWEEAR 178
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEA---ELEELEAELEELEAE-------LAELEAELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 179 RAEVSELKIEAAKLRQALAREARKVEELQQQQQLAfQEHRLELERVHSDKNGEIDHHREQYENLK----------WTLER 248
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEERRRELEERLEEL-EEELAELEEELEELEEELEELEEELEEAEeeleeaeaelAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 249 KLEELDGELALQRQELLLEFESKMR--KREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNA 326
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEalRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 327 ELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETfKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTR 406
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA-AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAG 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 407 VLELQAHCETLE---AQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAwdAQIAQLSKEMVSRDLQIQTLQEEEVKLKA 483
Cdd:COG1196 525 AVAVLIGVEAAYeaaLEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGR--ATFLPLDKIRARAALAAALARGAIGAAVD 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 484 QVArSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQ 563
Cdd:COG1196 603 LVA-SDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 564 EVVLKAVTLERDQAVQALRmhglprpgAQMLLRQHEEEiskdfpsseiQRLREQNTSLRNAIAQMRKEMEALshqipppi 643
Cdd:COG1196 682 EELAERLAEEELELEEALL--------AEEEEERELAE----------AEEERLEEELEEEALEEQLEAERE-------- 735
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1034599168 644 QTAAESTDANQPDPEAGGDAATPDYVL-ALEAEIRTLKHKFKTLEK 688
Cdd:COG1196 736 ELLEELLEEEELLEEEALEELPEPPDLeELERELERLEREIEALGP 781
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
245-833 |
4.75e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.37 E-value: 4.75e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 245 TLERKLEELDGELALqrqelllefeskmrkrehefrlqadnmsntalsreLKVKLLHKELEALKEAGAKAAESLQRAEAT 324
Cdd:COG1196 217 ELKEELKELEAELLL-----------------------------------LKLRELEAELEELEAELEELEAELEELEAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 325 NAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAvkgahVEQLQELQ 404
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAEL-----EEELEELE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 405 TRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQ 484
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 485 VARSQQDIERYKQQLSLAVERERslERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQE 564
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEE--EEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 565 VVLKAVTLERDQAVQALRMHGLprPGAQMLLRQHEEEISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIPPPIQ 644
Cdd:COG1196 495 LLLEAEADYEGFLEGVKAALLL--AGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 645 TAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKHKFKTLEKHLEDVLDPLKMSSPHAESQPSVRTSTETTGGSAQAG 724
Cdd:COG1196 573 RATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 725 QAGGSVQAGQAGGSVQAGPVSSGLALRKLGDRVQLLN-LLVTRLRQKVLREPLEPAALQRELPREVDQVHLEVLELRKQV 803
Cdd:COG1196 653 GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAeEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEA 732
|
570 580 590
....*....|....*....|....*....|
gi 1034599168 804 AELGKHLRIAQHGGAEPSGRKQPPASDAVA 833
Cdd:COG1196 733 EREELLEELLEEEELLEEEALEELPEPPDL 762
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
106-635 |
5.64e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.90 E-value: 5.64e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 106 RKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEdfvynlqvLEERDLELERYDAAFAQAREWEEARRAEVSEL 185
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEE--------LEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 186 KIEAAKLRQALAREARKveelqqqqQLAFQEHRLELERVHSDKNGEIDHHREQyenlkwtlerkLEELDGELALQRQELL 265
Cdd:COG1196 378 EEELEELAEELLEALRA--------AAELAAQLEELEEAEEALLERLERLEEE-----------LEELEEALAELEEEEE 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 266 LEFESKMRKREHEFRLQADNMSNTALSRELKvkllhKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAM 345
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLELLAELL-----EEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 346 SRARVKDLEDKLHSVQLTRKKEEETF---------KRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRVLELQAhcET 416
Cdd:COG1196 514 LLLAGLRGLAGAVAVLIGVEAAYEAAleaalaaalQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALA--AA 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 417 LEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYK 496
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 497 QQLSLAVERERSLERDQVQLGLDWQRRcDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQ 576
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEA-LLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEE 750
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1034599168 577 AVQALRMHGLPRPGAQMLLRQHEEEIS-------------------KDFPSSEIQRLREQNTSLRNAIAQMRKEMEAL 635
Cdd:COG1196 751 EALEELPEPPDLEELERELERLEREIEalgpvnllaieeyeeleerYDFLSEQREDLEEARETLEEAIEEIDRETRER 828
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
172-691 |
9.15e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.13 E-value: 9.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 172 REWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEH----RLELERVHSDKNGEIDHHREQYENlkwtLE 247
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAEleaeLEELRLELEELELELEEAQAEEYE----LL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 248 RKLEELDGELALQRQEL--LLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATN 325
Cdd:COG1196 295 AELARLEQDIARLEERRreLEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 326 AELERKLQSRAGELQDLEamsrARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHvEQLQELQT 405
Cdd:COG1196 375 AEAEEELEELAEELLEAL----RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE-EALEEAAE 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 406 RVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKS-------------AWDAQIAQLSKEMVSRDLQIQ 472
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLlleaeadyegfleGVKAALLLAGLRGLAGAVAVL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 473 TLQEEEVKLKAQVA--------------RSQQDIERYKQQ-------LSLAVERERSLERDQVQLG-LDWQRRCDDIERD 530
Cdd:COG1196 530 IGVEAAYEAALEAAlaaalqnivveddeVAAAAIEYLKAAkagratfLPLDKIRARAALAAALARGaIGAAVDLVASDLR 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 531 QIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEIS------- 603
Cdd:COG1196 610 EADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEelaerla 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 604 KDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIPPPIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKHKF 683
Cdd:COG1196 690 EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEREL 769
|
....*...
gi 1034599168 684 KTLEKHLE 691
Cdd:COG1196 770 ERLEREIE 777
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
106-635 |
4.86e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 74.02 E-value: 4.86e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 106 RKEEEWRALQAHRTQLQEAALQDTRsQLEEAQgklrclqedfvynlQVLEERDLELERY---DAAFAQAREWEEARRAEV 182
Cdd:PTZ00121 1104 KKTETGKAEEARKAEEAKKKAEDAR-KAEEAR--------------KAEDARKAEEARKaedAKRVEIARKAEDARKAEE 1168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 183 SE-----LKIEAAK----LRQAL----AREARKVEELQQQQQL--------AFQEHRLE-LERVHSDKNGEIDHHREQYE 240
Cdd:PTZ00121 1169 ARkaedaKKAEAARkaeeVRKAEelrkAEDARKAEAARKAEEErkaeearkAEDAKKAEaVKKAEEAKKDAEEAKKAEEE 1248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 241 NLKWTLeRKLEELDGELALQRQELLLEFESK----MRK----------REHEFRLQADNMSNTALSRELKVKLLHKELEA 306
Cdd:PTZ00121 1249 RNNEEI-RKFEEARMAHFARRQAAIKAEEARkadeLKKaeekkkadeaKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 307 LKEAGA---KAAESLQRAEATNAELERKlqsrAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEEtfKRKHEELDRLAR 383
Cdd:PTZ00121 1328 KKKADAakkKAEEAKKAAEAAKAEAEAA----ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE--KKKADEAKKKAE 1401
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 384 E--KDAVLVAVKGAHVEQLQELQTRVLELQahcETLEAQLRRAEWRQADTAKEKdaaIDQLREDASTVKSAWDAQIAQLS 461
Cdd:PTZ00121 1402 EdkKKADELKKAAAAKKKADEAKKKAEEKK---KADEAKKKAEEAKKADEAKKK---AEEAKKAEEAKKKAEEAKKADEA 1475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 462 KEMVSRDLQIQTLQE--EEVKLKAQVARSQQDIERYKQQLSLAVERERS--LERDQVQLGLDWQRRCDDIER-DQIQKSE 536
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKkaEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAdeAKKAEEAKKADEAKKAEEKKKaDELKKAE 1555
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 537 ALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQmlLRQHEEEISKDFPSSEIQRLRE 616
Cdd:PTZ00121 1556 ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE--AKKAEEAKIKAEELKKAEEEKK 1633
|
570
....*....|....*....
gi 1034599168 617 QNTSLRNAIAQMRKEMEAL 635
Cdd:PTZ00121 1634 KVEQLKKKEAEEKKKAEEL 1652
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
312-639 |
7.39e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 7.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 312 AKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRK--KEEETFKRKHEELDRLAREKDAVL 389
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKdlARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 390 VAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRA--EWRQADTA-KEKDAAIDQLREDASTVKSAWD---AQIAQLSKE 463
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLkeELKALREAlDELRAELTLLNEEAANLRERLEsleRRIAATERR 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 464 MVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIE--RDQIQKSEALIQG 541
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRelESKRSELRRELEE 919
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 542 LSMAKSQVAAKLQETEQALQE-QEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEIS----------------- 603
Cdd:TIGR02168 920 LREKLAQLELRLEGLEVRIDNlQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKelgpvnlaaieeyeelk 999
|
330 340 350
....*....|....*....|....*....|....*...
gi 1034599168 604 --KDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQI 639
Cdd:TIGR02168 1000 erYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDT 1037
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
122-635 |
7.54e-13 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 73.15 E-value: 7.54e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 122 QEAALQDTRSQLEEAQGKlrclqeDFVYNLQVLE----ERDLELERYDAAFAQAREWEEA----------RRAEVSELKI 187
Cdd:PRK02224 185 QRGSLDQLKAQIEEKEEK------DLHERLNGLEselaELDEEIERYEEQREQARETRDEadevleeheeRREELETLEA 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 188 EAAKLRQALAREARKveelQQQQQLAFQEHRLELERVHSDKNGEIDhhreqyenlkwtlERKLEELDGELALQRQELLLE 267
Cdd:PRK02224 259 EIEDLRETIAETERE----REELAEEVRDLRERLEELEEERDDLLA-------------EAGLDDADAEAVEARREELED 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 268 FESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAM-- 345
Cdd:PRK02224 322 RDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERfg 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 346 -SRARVKDLEDKLHSVQLTR---KKEEETFKRKHEELDRLAREKDAVLVA---------VKGA-HVEQLQELQTRVLELQ 411
Cdd:PRK02224 402 dAPVDLGNAEDFLEELREERdelREREAELEATLRTARERVEEAEALLEAgkcpecgqpVEGSpHVETIEEDRERVEELE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 412 AHCETLEAQLRRAEWR--QADTAKEKDAAIDQLREDASTVksawDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQ 489
Cdd:PRK02224 482 AELEDLEEEVEEVEERleRAEDLVEAEDRIERLEERREDL----EELIAERRETIEEKRERAEELRERAAELEAEAEEKR 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 490 QDIERYKQQLSLAVERERSLERDQVQLgldwqrrcdDIERDQIQKSEALIQGLSMAKSQVaAKLQETEQALQEQEVVLKA 569
Cdd:PRK02224 558 EAAAEAEEEAEEAREEVAELNSKLAEL---------KERIESLERIRTLLAAIADAEDEI-ERLREKREALAELNDERRE 627
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1034599168 570 VTLERDQAVQALR--MHGLPRPGAQMLLRQHEEEISKdfPSSEIQRLREQNTSLRNAIAQMRKEMEAL 635
Cdd:PRK02224 628 RLAEKRERKRELEaeFDEARIEEAREDKERAEEYLEQ--VEEKLDELREERDDLQAEIGAVENELEEL 693
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
105-618 |
2.79e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 71.71 E-value: 2.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 105 LRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKlrclqedfvynlqvlEERDLELERYDAAFA----QAREWEEARRA 180
Cdd:PTZ00121 1193 LRKAEDARKAEAARKAEEERKAEEARKAEDAKKAE---------------AVKKAEEAKKDAEEAkkaeEERNNEEIRKF 1257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 181 EVSELKIEAAKLRQALAREARKVEelqqqqqlafqehrlELERVHSDKNGEidhhreqyENLKWTLERKLEELDGELALQ 260
Cdd:PTZ00121 1258 EEARMAHFARRQAAIKAEEARKAD---------------ELKKAEEKKKAD--------EAKKAEEKKKADEAKKKAEEA 1314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 261 RQelllefESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQ 340
Cdd:PTZ00121 1315 KK------ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 341 DLEAMSRARVKDLEDKLHSVQLTRKKEEetfKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRVLELQAHCETL--- 417
Cdd:PTZ00121 1389 EKKKADEAKKKAEEDKKKADELKKAAAA---KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAkkk 1465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 418 --------EAQLRRAEWRQADTAKEK----DAAIDQLREDASTVKSAWDAQIAQLSKemvsrdlQIQTLQEEEVKLKAQV 485
Cdd:PTZ00121 1466 aeeakkadEAKKKAEEAKKADEAKKKaeeaKKKADEAKKAAEAKKKADEAKKAEEAK-------KADEAKKAEEAKKADE 1538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 486 ARSQQDIeRYKQQLSLAVERERSLERDQV-QLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQE 564
Cdd:PTZ00121 1539 AKKAEEK-KKADELKKAEELKKAEEKKKAeEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE 1617
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 1034599168 565 VVLKAVTLERDQAVqalrmhglpRPGAQMLLRQHEEEISKdfpSSEIQRLREQN 618
Cdd:PTZ00121 1618 AKIKAEELKKAEEE---------KKKVEQLKKKEAEEKKK---AEELKKAEEEN 1659
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
364-904 |
3.22e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 3.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 364 RKKEEETFKRKHEELDRLAREKDavLVAVKGAHVEQLQ---ELQTRVLELQAHCETLEAQLRRAEWRQAdtaKEKDAAID 440
Cdd:COG1196 171 KERKEEAERKLEATEENLERLED--ILGELERQLEPLErqaEKAERYRELKEELKELEAELLLLKLREL---EAELEELE 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 441 QLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLD- 519
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEEl 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 520 --WQRRCDDIE------RDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGA 591
Cdd:COG1196 326 aeLEEELEELEeeleelEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 592 QMLLRQHEEEISKDfpSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIpppIQTAAESTDANQPDPEAGGDAAtpdyvlA 671
Cdd:COG1196 406 EEAEEALLERLERL--EEELEELEEALAELEEEEEEEEEALEEAAEEE---AELEEEEEALLELLAELLEEAA------L 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 672 LEAEIRTLKHKFKTLEKHLEDVLDPLKMSSPHAESQPSVRTSTETTGGSAQAGQAGGSVQAGQAGGSVQAGPVSSGLALR 751
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVE 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 752 KLGDRVQLLNLLVTRLRQKVLREPLEPAALQRELPR--------------EVDQVHLEVLELRKQVAELGKHLRIAQHGG 817
Cdd:COG1196 555 DDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAalargaigaavdlvASDLREADARYYVLGDTLLGRTLVAARLEA 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 818 AEPSGRKQPPASDAVALGREGLTkRGPMEAEDQGELFLHLRSVARAPQTLSMHRLQRKLKEAARKIISLRLEKEQLIEMG 897
Cdd:COG1196 635 ALRRAVTLAGRLREVTLEGEGGS-AGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
....*..
gi 1034599168 898 NRLRAEL 904
Cdd:COG1196 714 EERLEEE 720
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
122-412 |
3.44e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 3.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 122 QEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQALAREAR 201
Cdd:TIGR02168 668 TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 202 KVEELQQQQQLAFQEHRLELERVHsdkngEIDHHREQYENLKWTLERKLEELDGELALQRQELllefeSKMRKREHEFRL 281
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLE-----EAEEELAEAEAEIEELEAQIEQLKEELKALREAL-----DELRAELTLLNE 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 282 QADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELE---RKLQSRAGELQDLEAMSRARVKDLEDKLH 358
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEeliEELESELEALLNERASLEEALALLRSELE 897
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1034599168 359 SVQLTRKKEEETFKRKHEELDRLaREKdavlvavKGAHVEQLQELQTRVLELQA 412
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEEL-REK-------LAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
271-599 |
5.96e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.00 E-value: 5.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 271 KMRKREHEFRLQAdnmSNTALSRelkVKLLHKELEalkeagaKAAESLQR-AEATNAELERKLQSRAGELqdleAMSRAR 349
Cdd:TIGR02168 171 KERRKETERKLER---TRENLDR---LEDILNELE-------RQLKSLERqAEKAERYKELKAELRELEL----ALLVLR 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 350 VKDLEDKLHSVQLTRKKEEetfkRKHEELDRLAREKDAVLVAVKGAHVE---QLQELQTRVLELQAHCETLEAQLRRAEW 426
Cdd:TIGR02168 234 LEELREELEELQEELKEAE----EELEELTAELQELEEKLEELRLEVSEleeEIEELQKELYALANEISRLEQQKQILRE 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 427 RQA--------------------DTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVA 486
Cdd:TIGR02168 310 RLAnlerqleeleaqleelesklDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 487 RSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVV 566
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
330 340 350
....*....|....*....|....*....|...
gi 1034599168 567 LKAVTLERDQAVQALRMHGLPRPGAQMLLRQHE 599
Cdd:TIGR02168 470 LEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
123-508 |
8.00e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.63 E-value: 8.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 123 EAALQDTrSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAevSELKIEAAKLRQALAREARK 202
Cdd:TIGR02169 173 EKALEEL-EEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELL--KEKEALERQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 203 veelqqqqqlafQEHRLELERVHSDKNGEIdhhrEQYENLKWTLERKLEELDGELALQRQELLLEFESKMRKREHefrlq 282
Cdd:TIGR02169 250 ------------EEELEKLTEEISELEKRL----EEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLER----- 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 283 adnmsntalsrelKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEamsrARVKDLEDKLHSVQL 362
Cdd:TIGR02169 309 -------------SIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT----EEYAELKEELEDLRA 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 363 TRKKEEETFKRKHEELDRLAREKDAvLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQL 442
Cdd:TIGR02169 372 ELEEVDKEFAETRDELKDYREKLEK-LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEI 450
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034599168 443 REDastvksawDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERS 508
Cdd:TIGR02169 451 KKQ--------EWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRG 508
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
184-500 |
1.32e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 1.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 184 ELKIEAAKLRQALAREARKVEELQQQQQLAFQEHrlelervhsdkngeidhhrEQYENLKWTLERKLEELDGELALQRQE 263
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKEL-------------------EELEEELEQLRKELEELSRQISALRKD 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 264 lLLEFESKMRKREHEFRLQADNMSNtalsrelkvklLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLE 343
Cdd:TIGR02168 735 -LARLEAEVEQLEERIAQLSKELTE-----------LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 344 AMS---RARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLvavkgahvEQLQELQTRVLELQAHCETLEAQ 420
Cdd:TIGR02168 803 EALdelRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS--------EDIESLAAEIEELEELIEELESE 874
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 421 LRRAEWRQAdtakEKDAAIDQLREDASTVksawDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLS 500
Cdd:TIGR02168 875 LEALLNERA----SLEEALALLRSELEEL----SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
93-509 |
2.01e-10 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 65.17 E-value: 2.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 93 PLGSEPALNELLLRK-EEEWRALQAHRTQLQEA--ALQDTRSQLEEAQGKLRCLQED-----FVYNLQVLEERDLELERY 164
Cdd:COG4717 61 PQGRKPELNLKELKElEEELKEAEEKEEEYAELqeELEELEEELEELEAELEELREElekleKLLQLLPLYQELEALEAE 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 165 DAAFAQAREWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKW 244
Cdd:COG4717 141 LAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQE 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 245 TLERKLEELDgelALQRQELLLEFESKMRKREHEFRLQA-----DNMSNTALSRELKVK-----------LLHKELEALK 308
Cdd:COG4717 221 ELEELEEELE---QLENELEAAALEERLKEARLLLLIAAallalLGLGGSLLSLILTIAgvlflvlgllaLLFLLLAREK 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 309 EAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETfkRKHEELDRLAREKDAV 388
Cdd:COG4717 298 ASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEL--EEELQLEELEQEIAAL 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 389 LVAVKGAHVEQLQELQTRV---LELQAHCETLEAQLRR-AEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEM 464
Cdd:COG4717 376 LAEAGVEDEEELRAALEQAeeyQELKEELEELEEQLEElLGELEELLEALDEEELEEELEELEEELEELEEELEELREEL 455
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 1034599168 465 VSRDLQIQTLQEEEvklkaQVARSQQDIERYKQQLSLAVERERSL 509
Cdd:COG4717 456 AELEAELEQLEEDG-----ELAELLQELEELKAELRELAEEWAAL 495
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
100-807 |
2.88e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 2.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 100 LNELLLRKEEEWRALQAHRTQLQEAA------LQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQARE 173
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELaeleekLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 174 WEEARRAEVSELKIEAaklrQALAREARKVEELQQQQQLAFQEHRL-ELERVHSDKNGEIDHHREQYEnlkwTLERKLEE 252
Cdd:TIGR02168 394 QIASLNNEIERLEARL----ERLEDRRERLQQEIEELLKKLEEAELkELQAELEELEEELEELQEELE----RLEEALEE 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 253 LDGELALQRQELLLEFESKMRKREHEFRLQadNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKL 332
Cdd:TIGR02168 466 LREELEEAEQALDAAERELAQLQARLDSLE--RLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAAL 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 333 QSRageLQDLEamsrarVKDLEDKLHSVQLTrkKEEETFKRKHEELDRLAREKdavlvaVKGAHVEQLQElQTRVLELQA 412
Cdd:TIGR02168 544 GGR---LQAVV------VENLNAAKKAIAFL--KQNELGRVTFLPLDSIKGTE------IQGNDREILKN-IEGFLGVAK 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 413 HCETLEAQLRRA-EWRQADT--AKEKDAAIDQLRE----------DASTVKSAW---------DAQIAQLSKEMVSRDLQ 470
Cdd:TIGR02168 606 DLVKFDPKLRKAlSYLLGGVlvVDDLDNALELAKKlrpgyrivtlDGDLVRPGGvitggsaktNSSILERRREIEELEEK 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 471 IQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIER--DQIQKSEALIQGLSMAKSQ 548
Cdd:TIGR02168 686 IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQleERIAQLSKELTELEAEIEE 765
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 549 VAAKLQETEQALQEQEVVLKAVTLERDQAVQALrmhglprpgaQMLLRQHEEEiskdfpSSEIQRLREQNTSLRNAIAQM 628
Cdd:TIGR02168 766 LEERLEEAEEELAEAEAEIEELEAQIEQLKEEL----------KALREALDEL------RAELTLLNEEAANLRERLESL 829
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 629 RKEMEALSHQIpppiQTAAESTDANQPDpeaggdaatpdyVLALEAEIRTLKHKFKTLEKHLEDVLDPLKMSSPHAESQP 708
Cdd:TIGR02168 830 ERRIAATERRL----EDLEEQIEELSED------------IESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 709 SVRTSTettggSAQAGQAGGSVQAGQAGGSVQAGPVSSgLALRKLGDRVQLLNLLvTRLRQKVLREPLEPAALQRELPRE 788
Cdd:TIGR02168 894 SELEEL-----SEELRELESKRSELRRELEELREKLAQ-LELRLEGLEVRIDNLQ-ERLSEEYSLTLEEAEALENKIEDD 966
|
730
....*....|....*....
gi 1034599168 789 VDQVHLEVLELRKQVAELG 807
Cdd:TIGR02168 967 EEEARRRLKRLENKIKELG 985
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
316-604 |
5.43e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.93 E-value: 5.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 316 ESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQltrkKEEETFKRKHEELDRLAREKDAVLVAVKG- 394
Cdd:TIGR02169 684 EGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE----QEEEKLKERLEELEEDLSSLEQEIENVKSe 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 395 -AHVE-QLQELQTRVLELQAHCETLEAQLRRAEWRQadtakekdaaIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQ-- 470
Cdd:TIGR02169 760 lKELEaRIEELEEDLHKLEEALNDLEARLSHSRIPE----------IQAELSKLEEEVSRIEARLREIEQKLNRLTLEke 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 471 -----IQTLQEEEVKLKAQVARSQQDIERYKQQLSlavERERSLERDQVQLgLDWQRRCDDIERDqIQKSEALIQGLSMA 545
Cdd:TIGR02169 830 ylekeIQELQEQRIDLKEQIKSIEKEIENLNGKKE---ELEEELEELEAAL-RDLESRLGDLKKE-RDELEAQLRELERK 904
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1034599168 546 KSQVAAKLQETEQALQEQEVVLKAVtLERDQAVQALRMHGLPRPGAQMLLRQHEEEISK 604
Cdd:TIGR02169 905 IEELEAQIEKKRKRLSELKAKLEAL-EEELSEIEDPKGEDEEIPEEELSLEDVQAELQR 962
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
99-393 |
1.04e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 1.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 99 ALNELLLRKEEEWRALQAHRTQLQ------EAALQDTRSQLEEAQGKLRCLqedfvynLQVLEERDLELERYDAAFAQAR 172
Cdd:TIGR02168 730 ALRKDLARLEAEVEQLEERIAQLSkeltelEAEIEELEERLEEAEEELAEA-------EAEIEELEAQIEQLKEELKALR 802
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 173 EWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSdkngeIDHHREQYENLKWTLERKLEE 252
Cdd:TIGR02168 803 EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES-----LAAEIEELEELIEELESELEA 877
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 253 LDGELALQRQELllefeskmrkreHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKL 332
Cdd:TIGR02168 878 LLNERASLEEAL------------ALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034599168 333 QSRAG-ELQDLEAMSRARVKDLEDKLHSV-QLTRKKEE---------ETFKRKHEELDRLAREKDAVLVAVK 393
Cdd:TIGR02168 946 SEEYSlTLEEAEALENKIEDDEEEARRRLkRLENKIKElgpvnlaaiEEYEELKERYDFLTAQKEDLTEAKE 1017
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
104-705 |
1.16e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 1.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 104 LLRKEEEWRALQAH----RTQLQEAALQDTRSQLEEAQGKLRCLQEDfvynlqvLEERDLELERYDAAFAQAREWEEARR 179
Cdd:TIGR02168 215 YKELKAELRELELAllvlRLEELREELEELQEELKEAEEELEELTAE-------LQELEEKLEELRLEVSELEEEIEELQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 180 AEVSELKIEAAKLrqalarEARKVEELQQQQQLAFQEHRLELERVHSDKngeidhHREQYENLKWTLERKLEELDGELAL 259
Cdd:TIGR02168 288 KELYALANEISRL------EQQKQILRERLANLERQLEELEAQLEELES------KLDELAEELAELEEKLEELKEELES 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 260 QRQEL--LLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQS-RA 336
Cdd:TIGR02168 356 LEAELeeLEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 337 GELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREkdavlVAVKGAHVEQLQELQTRVLELQAHCET 416
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE-----LAQLQARLDSLERLQENLEGFSEGVKA 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 417 LEAQLRR---------------AEWRQADTAKEKDAAIDQLREDASTVKSAWDAQiAQLSKEMVS-------RDLQIQTL 474
Cdd:TIGR02168 511 LLKNQSGlsgilgvlselisvdEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFL-KQNELGRVTflpldsiKGTEIQGN 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 475 QEEEVKLKAQVARSQQDIERYKQQLSLAVER--ERSLERDQVQLGLDWQRRCDDIER------DQI----------QKSE 536
Cdd:TIGR02168 590 DREILKNIEGFLGVAKDLVKFDPKLRKALSYllGGVLVVDDLDNALELAKKLRPGYRivtldgDLVrpggvitggsAKTN 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 537 ALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRmhGLPRPGAQMLLRQHEEEISKDFPSSEIQRLRE 616
Cdd:TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELE--QLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 617 QNTSLRNAIAQMRKEMEALSHQI----PPPIQTAAESTDANQPDPEAGGDAATPDYVL-ALEAEIRTLKHKFKTLEKHLE 691
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLeeaeEELAEAEAEIEELEAQIEQLKEELKALREALdELRAELTLLNEEAANLRERLE 827
|
650
....*....|....
gi 1034599168 692 DVLDPLKMSSPHAE 705
Cdd:TIGR02168 828 SLERRIAATERRLE 841
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
246-511 |
2.14e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.01 E-value: 2.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 246 LERKLEELDGELALQRQELllefeSKMRKREHEFRLQADNMSNtalsrelKVKLLHKELEALKEAGAKAAESLQRAEATN 325
Cdd:TIGR02169 679 LRERLEGLKRELSSLQSEL-----RRIENRLDELSQELSDASR-------KIGEIEKEIEQLEQEEEKLKERLEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 326 AELERKLQSRAGELQDLEamsrARVKDLEDKLHSVQLTRKKEEETFKR-KHEELDRLAREKDAVLVAVKGAHVEQLQELQ 404
Cdd:TIGR02169 747 SSLEQEIENVKSELKELE----ARIEELEEDLHKLEEALNDLEARLSHsRIPEIQAELSKLEEEVSRIEARLREIEQKLN 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 405 TRVLE---LQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSA------WDAQIAQLSKEMVSRDLQIQTLQ 475
Cdd:TIGR02169 823 RLTLEkeyLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELeaalrdLESRLGDLKKERDELEAQLRELE 902
|
250 260 270
....*....|....*....|....*....|....*.
gi 1034599168 476 EEEVKLKAQVARSQQDIERYKQQLSLAVERERSLER 511
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIED 938
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
316-691 |
3.51e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 3.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 316 ESLQRAEATNAELERklqsrageLQDLeamsrarVKDLEDKLHSVQLTRKKEEEtFKRKHEELDRLARekdAVLVAVKGA 395
Cdd:TIGR02168 176 ETERKLERTRENLDR--------LEDI-------LNELERQLKSLERQAEKAER-YKELKAELRELEL---ALLVLRLEE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 396 HVEQLQELQTRVLELQAHCETLEAQLRRAEwrqadtakekdaaidqlredastvksawdAQIAQLSKEMVSRDLQIQTLQ 475
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELE-----------------------------EKLEELRLEVSELEEEIEELQ 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 476 EEEVKLKAQVARSQQDIERYKQQLSLAverERSLERDQVQLGLDWQRRcdDIERDQIQKSEALIQGLSMAKSQVAAKLQE 555
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANL---ERQLEELEAQLEELESKL--DELAEELAELEEKLEELKEELESLEAELEE 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 556 TEQALQEQEVVLKAVTLERDQAvqalrmhglprpgaqmllrqheeeiskdfpSSEIQRLREQNTSLRNAIAQMRKEMEAL 635
Cdd:TIGR02168 363 LEAELEELESRLEELEEQLETL------------------------------RSKVAQLELQIASLNNEIERLEARLERL 412
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1034599168 636 SHQipppIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKHKFKTLEKHLE 691
Cdd:TIGR02168 413 EDR----RERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE 464
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
102-492 |
4.18e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.31 E-value: 4.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 102 ELLLRKEEEWRALQAHRTQLQEAALQD-TRSQLEEAQGKLRclqedfvynlqvlEERDLELERYDAAfaQAREWEEARRA 180
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKKAEEAKKADeAKKKAEEAKKKAD-------------EAKKAAEAKKKAD--EAKKAEEAKKA 1524
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 181 EVSELKIEAAKlrqalAREARKVEELQQQQQLAFQEhrlELERVHSDKNGEidhhreqyenlkwtlERKLEELDGELALQ 260
Cdd:PTZ00121 1525 DEAKKAEEAKK-----ADEAKKAEEKKKADELKKAE---ELKKAEEKKKAE---------------EAKKAEEDKNMALR 1581
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 261 RQELLLEFEskmRKREHEFrlqadnMSNTALSRELKVKLLHKELEALKEagakaAESLQRAEATNAELERKLQSRAGELQ 340
Cdd:PTZ00121 1582 KAEEAKKAE---EARIEEV------MKLYEEEKKMKAEEAKKAEEAKIK-----AEELKKAEEEKKKVEQLKKKEAEEKK 1647
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 341 DLEAMSRArvkDLEDKLHSVQLTRKKEEEtfKRKHEELDRLAREKDAVLVAVKGAHVE--QLQELQTRVLELQAHCEtle 418
Cdd:PTZ00121 1648 KAEELKKA---EEENKIKAAEEAKKAEED--KKKAEEAKKAEEDEKKAAEALKKEAEEakKAEELKKKEAEEKKKAE--- 1719
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 419 aQLRRAEWRQADTAKE--KDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQI---------QTLQEEEVKLKAQVAR 487
Cdd:PTZ00121 1720 -ELKKAEEENKIKAEEakKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIrkekeavieEELDEEDEKRRMEVDK 1798
|
....*
gi 1034599168 488 SQQDI 492
Cdd:PTZ00121 1799 KIKDI 1803
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
160-579 |
8.34e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.15 E-value: 8.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 160 ELERYDAAFAQAREW----EEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHH 235
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAkkkaEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEA 1488
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 236 REQYENLKwtleRKLEEL-DGELALQRQELLLEFESKmrKREHEFRLQADNMSNTALSRELKVKllhKELEALKEAGAKA 314
Cdd:PTZ00121 1489 KKKAEEAK----KKADEAkKAAEAKKKADEAKKAEEA--KKADEAKKAEEAKKADEAKKAEEKK---KADELKKAEELKK 1559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 315 AESLQRAEATNAELERKLQS--RAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAV 392
Cdd:PTZ00121 1560 AEEKKKAEEAKKAEEDKNMAlrKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 393 KGAHVEQLQELQTRVLELQAHCETLE-AQLRRAEWRQADTAK----EKDAAIDQLREDASTVKSAWDA---------QIA 458
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKAEEENKIKAAEeAKKAEEDKKKAEEAKkaeeDEKKAAEALKKEAEEAKKAEELkkkeaeekkKAE 1719
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 459 QLSKEMVSRDLQIQTL--QEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQ----VQLGLDWQRRCDDIERDQI 532
Cdd:PTZ00121 1720 ELKKAEEENKIKAEEAkkEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEkeavIEEELDEEDEKRRMEVDKK 1799
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 1034599168 533 QK-----SEALIQGlSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQ 579
Cdd:PTZ00121 1800 IKdifdnFANIIEG-GKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFE 1850
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
106-451 |
2.26e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 2.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 106 RKEEEWRALQAHRTQLQEAALQDtrsQLEEAQGKLRCLQEdfvynlqvleerdlELERydaafAQAREWEEARRAEVSEL 185
Cdd:TIGR02168 210 EKAERYKELKAELRELELALLVL---RLEELREELEELQE--------------ELKE-----AEEELEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 186 KIEAAKLRQalareaRKVEELQQQQQLAFQEHRLELervhSDKNGEIDHHREQYENLKWTLERKLEELDgELALQRQELL 265
Cdd:TIGR02168 268 KLEELRLEV------SELEEEIEELQKELYALANEI----SRLEQQKQILRERLANLERQLEELEAQLE-ELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 266 LEFEskmrkrehefrlqadnmsntalSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLE-- 343
Cdd:TIGR02168 337 EELA----------------------ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLElq 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 344 -AMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKdavlvavkgaHVEQLQELQTRVLELQAHCETLEAQLR 422
Cdd:TIGR02168 395 iASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE----------LQAELEELEEELEELQEELERLEEALE 464
|
330 340
....*....|....*....|....*....
gi 1034599168 423 RAEWRQADTAKEKDAAIDQLREDASTVKS 451
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQARLDS 493
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
104-513 |
5.10e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.08 E-value: 5.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 104 LLRKEEEWRALQAHRTQLqEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELE------RYDAAFAQAREWEEA 177
Cdd:COG4717 83 AEEKEEEYAELQEELEEL-EEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAElaelpeRLEELEERLEELREL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 178 RRaEVSELKIEAAKLRQALAREARKVEELQQQqqlAFQEHRLELERVHSDkngeidhhREQYENLKWTLERKLEELDGEL 257
Cdd:COG4717 162 EE-ELEELEAELAELQEELEELLEQLSLATEE---ELQDLAEELEELQQR--------LAELEEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 258 AlqrqelllEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERK----LQ 333
Cdd:COG4717 230 E--------QLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLARekasLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 334 SRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRVLElQAH 413
Cdd:COG4717 302 KEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLA-EAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 414 CETLEAQLRRAEwrQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEmvsrdlqiqTLQEEEVKLKAQVARSQQDIE 493
Cdd:COG4717 381 VEDEEELRAALE--QAEEYQELKEELEELEEQLEELLGELEELLEALDEE---------ELEEELEELEEELEELEEELE 449
|
410 420
....*....|....*....|
gi 1034599168 494 RYKQQLSLAVERERSLERDQ 513
Cdd:COG4717 450 ELREELAELEAELEQLEEDG 469
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
108-653 |
9.89e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.46 E-value: 9.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 108 EEEWRALQAHRTQLQEAalqdtRSQLEEAQGKLRCLQEdfvynlqvLEERDlelERYDAAFAQAREWEEARRAevseLKI 187
Cdd:COG4913 224 FEAADALVEHFDDLERA-----HEALEDAREQIELLEP--------IRELA---ERYAAARERLAELEYLRAA----LRL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 188 EAAKLRQALAREARkveELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKW----TLERKLEELDGELAlQRQE 263
Cdd:COG4913 284 WFAQRRLELLEAEL---EELRAELARLEAELERLEARLDALREELDELEAQIRGNGGdrleQLEREIERLERELE-ERER 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 264 LLLEFESKMRKREHEFRLQADNMsnTALSRELKvkllhKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLE 343
Cdd:COG4913 360 RRARLEALLAALGLPLPASAEEF--AALRAEAA-----ALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 344 A--------MSRAR----------------------VKDLEDK--------LHSVQLTRKKEEETFKRKHEELDRLAREK 385
Cdd:COG4913 433 RrksniparLLALRdalaealgldeaelpfvgelieVRPEEERwrgaiervLGGFALTLLVPPEHYAAALRWVNRLHLRG 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 386 DAVLVAVKGAHVEQLQE---------------------LQTRVLELQAH--CETLEaQLRRAEW--------RQADTAKE 434
Cdd:COG4913 513 RLVYERVRTGLPDPERPrldpdslagkldfkphpfrawLEAELGRRFDYvcVDSPE-ELRRHPRaitragqvKGNGTRHE 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 435 KDaaidqlreDASTVKSAWdaQIAQLSKEmvsrdlQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLER--D 512
Cdd:COG4913 592 KD--------DRRRIRSRY--VLGFDNRA------KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRlaE 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 513 QVQLGLDW---QRRCDDIE--RDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQAL-----R 582
Cdd:COG4913 656 YSWDEIDVasaEREIAELEaeLERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELdelqdR 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 583 MHGLPRPG------------AQMLLRQHEEEISKDFpSSEIQRLREQntsLRNAIAQMRKEMEALSHQIPPPIQTAAEST 650
Cdd:COG4913 736 LEAAEDLArlelralleerfAAALGDAVERELRENL-EERIDALRAR---LNRAEEELERAMRAFNREWPAETADLDADL 811
|
...
gi 1034599168 651 DAN 653
Cdd:COG4913 812 ESL 814
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
99-562 |
1.03e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.46 E-value: 1.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 99 ALNELLLRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEDfvynlqvLEERDLELERYDAAFAQAREWEEAR 178
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERE-------LEERERRRARLEALLAALGLPLPAS 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 179 RAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSdkngEIDHHREQYENLKWTLERKLEELDGELA 258
Cdd:COG4913 379 AEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEA----EIASLERRKSNIPARLLALRDALAEALG 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 259 LQRQEL-----LLEfeskMRKREHEFRLQADNMSNTA----LSRELKVKLLHKELEALKEAGA----KAAESLQRAEATN 325
Cdd:COG4913 455 LDEAELpfvgeLIE----VRPEEERWRGAIERVLGGFaltlLVPPEHYAAALRWVNRLHLRGRlvyeRVRTGLPDPERPR 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 326 AE---LERKLQSRAGELQD-LEA-----MSRARVKDLED-KLHSVQLTR----KKEEETF-KRKHEELDRL------ARE 384
Cdd:COG4913 531 LDpdsLAGKLDFKPHPFRAwLEAelgrrFDYVCVDSPEElRRHPRAITRagqvKGNGTRHeKDDRRRIRSRyvlgfdNRA 610
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 385 KDAVLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRAE------WRQADTAK------EKDAAIDQLREDASTVKSA 452
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQrlaeysWDEIDVASaereiaELEAELERLDASSDDLAAL 690
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 453 wDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQvqlgLDWQRRCDDIERDQI 532
Cdd:COG4913 691 -EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL----LEERFAAALGDAVER 765
|
490 500 510
....*....|....*....|....*....|
gi 1034599168 533 QKSEALIQGLSMAKSQVAAKLQETEQALQE 562
Cdd:COG4913 766 ELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
218-631 |
1.51e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.82 E-value: 1.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 218 RLELERVHSDKNGEIDHHREQYENLKWT--------LERKLEELDGEL----------ALQRQELLLEFESKMRKREHEF 279
Cdd:PRK02224 175 RLGVERVLSDQRGSLDQLKAQIEEKEEKdlherlngLESELAELDEEIeryeeqreqaRETRDEADEVLEEHEERREELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 280 RLQAD------NMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELER------KLQSRAGELQDLEAMSR 347
Cdd:PRK02224 255 TLEAEiedlreTIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAvearreELEDRDEELRDRLEECR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 348 ARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHvEQLQELQTRVLELQAHCETLEAQLRRAEWR 427
Cdd:PRK02224 335 VAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRR-EEIEELEEEIEELRERFGDAPVDLGNAEDF 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 428 QADTAKEKDAAIDQLREDASTVKSAWD--AQIAQLSKE------------------MVSRDLQIQTLQEEEVKLKAQVAR 487
Cdd:PRK02224 414 LEELREERDELREREAELEATLRTARErvEEAEALLEAgkcpecgqpvegsphvetIEEDRERVEELEAELEDLEEEVEE 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 488 SQQDIERYKQQLSLAVERERSLERDQvqlglDWQRRCDDiERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQE----- 562
Cdd:PRK02224 494 VEERLERAEDLVEAEDRIERLEERRE-----DLEELIAE-RRETIEEKRERAEELRERAAELEAEAEEKREAAAEaeeea 567
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034599168 563 QEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEiskdfpssEIQRLREQntslRNAIAQMRKE 631
Cdd:PRK02224 568 EEAREEVAELNSKLAELKERIESLERIRTLLAAIADAED--------EIERLREK----REALAELNDE 624
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
145-694 |
2.37e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 2.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 145 EDFVYNlQVLEERDLElERYDAAFAQAREWEEARRAEVSELK--------IEAAKLRQALAREARKVEELQQQQQLAFQE 216
Cdd:COG4913 210 DDFVRE-YMLEEPDTF-EAADALVEHFDDLERAHEALEDAREqiellepiRELAERYAAARERLAELEYLRAALRLWFAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 217 HRLELERvhsdknGEIDHHREQYEnlkwTLERKLEELDGELALQRQELLlefeskmrkrehEFRLQADNMSNTALSR-EL 295
Cdd:COG4913 288 RRLELLE------AELEELRAELA----RLEAELERLEARLDALREELD------------ELEAQIRGNGGDRLEQlER 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 296 KVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKH 375
Cdd:COG4913 346 EIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 376 EELDRLAREKDAVlvavkGAHVEQL-----QELQTRVLELQAHCETLEAQLRRAEWRQA--------------DTAKEKD 436
Cdd:COG4913 426 AEIASLERRKSNI-----PARLLALrdalaEALGLDEAELPFVGELIEVRPEEERWRGAiervlggfaltllvPPEHYAA 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 437 AA--IDQLR-------EDASTVKSawDAQIAQLSKEMVSRDLQIQT--LQEEevkLKAQVAR--------SQQDIERYKQ 497
Cdd:COG4913 501 ALrwVNRLHlrgrlvyERVRTGLP--DPERPRLDPDSLAGKLDFKPhpFRAW---LEAELGRrfdyvcvdSPEELRRHPR 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 498 QLSLAVERERSLERdqvqlgldwqRRCDD---IERDQI--QKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTl 572
Cdd:COG4913 576 AITRAGQVKGNGTR----------HEKDDrrrIRSRYVlgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQ- 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 573 ERDQAVQALRMHG---LPRPGAQMLLRQHEEEISK-DFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQI--------- 639
Cdd:COG4913 645 ERREALQRLAEYSwdeIDVASAEREIAELEAELERlDASSDDLAALEEQLEELEAELEELEEELDELKGEIgrlekeleq 724
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034599168 640 --------------PPPIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKHKFKTLEKHLEDVL 694
Cdd:COG4913 725 aeeeldelqdrleaAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAM 793
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
347-639 |
3.79e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.74 E-value: 3.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 347 RARVKDLEDKLHSVQLTRKKEEETFKRKHEE-LDRLAREKDAVLVAVkgahVEQLQELQTRVLELQAHCETLEAQLRRAE 425
Cdd:pfam15921 237 KGRIFPVEDQLEALKSESQNKIELLLQQHQDrIEQLISEHEVEITGL----TEKASSARSQANSIQSQLEIIQEQARNQN 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 426 WRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQI-------QTLQEEEVKLKAQVARSQQDIERYKQQ 498
Cdd:pfam15921 313 SMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELtearterDQFSQESGNLDDQLQKLLADLHKREKE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 499 LSLAVERERSL-ERDQ-VQLGLDWQRRCDDIERDQIQKSEALIQGL--------------------SMAK-SQVAAKLQE 555
Cdd:pfam15921 393 LSLEKEQNKRLwDRDTgNSITIDHLRRELDDRNMEVQRLEALLKAMksecqgqmerqmaaiqgkneSLEKvSSLTAQLES 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 556 TEQALQE--QEVVLKAVTLERDQAVQALRMHGLPRpgAQMLLRQHEEEISK-----DFPSSEIQRLREQNTSLRNAiaqm 628
Cdd:pfam15921 473 TKEMLRKvvEELTAKKMTLESSERTVSDLTASLQE--KERAIEATNAEITKlrsrvDLKLQELQHLKNEGDHLRNV---- 546
|
330
....*....|.
gi 1034599168 629 RKEMEALSHQI 639
Cdd:pfam15921 547 QTECEALKLQM 557
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
108-419 |
3.88e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.66 E-value: 3.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 108 EEEWRALQAHRTQLQEAaLQDTRSQLEEAQGKLRCLQEDFVYNLQVLEE-------RDLELERYDAAFAQAREWEEARRA 180
Cdd:PRK02224 404 PVDLGNAEDFLEELREE-RDELREREAELEATLRTARERVEEAEALLEAgkcpecgQPVEGSPHVETIEEDRERVEELEA 482
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 181 EVSELKIEAAKLRQALAREARKVEelqqqqqlafQEHRLE-LERVHSDKNGEIDHHREqyenlkwTLERKLEELDgELAL 259
Cdd:PRK02224 483 ELEDLEEEVEEVEERLERAEDLVE----------AEDRIErLEERREDLEELIAERRE-------TIEEKRERAE-ELRE 544
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 260 QRQELLLEFESKmRKREHEFRLQADNMSNTALSRELKVKLLHKELEALkeagAKAAESLQRAEATNAELERkLQSRAGEL 339
Cdd:PRK02224 545 RAAELEAEAEEK-REAAAEAEEEAEEAREEVAELNSKLAELKERIESL----ERIRTLLAAIADAEDEIER-LREKREAL 618
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 340 QDLEAMSRARVKDL------------EDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAH--VEQLQELQT 405
Cdd:PRK02224 619 AELNDERRERLAEKrerkreleaefdEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVEneLEELEELRE 698
|
330
....*....|....
gi 1034599168 406 RVLELQAHCETLEA 419
Cdd:PRK02224 699 RREALENRVEALEA 712
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
177-639 |
4.57e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.30 E-value: 4.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 177 ARRAEVSELKIEAAKLRQALAREARKVEELQQqqqlafqEHRLELERVHSDKNgEIDHHREQYENLkwtlERKLEELDGE 256
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELP-------ELREELEKLEKEVK-ELEELKEEIEEL----EKELESLEGS 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 257 LAlQRQELLLEFESKMRKREHEFRLQADNMsntalsRELK-VKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSR 335
Cdd:PRK03918 254 KR-KLEEKIRELEERIEELKKEIEELEEKV------KELKeLKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 336 AGELQDLEAMSRaRVKDLEDKLhsVQLTRKKEE-ETFKRKHEELDRLAREKDAVLVAVKGAHVEQ----LQELQTRVLEL 410
Cdd:PRK03918 327 EERIKELEEKEE-RLEELKKKL--KELEKRLEElEERHELYEEAKAKKEELERLKKRLTGLTPEKlekeLEELEKAKEEI 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 411 QAHCETLEAQLRRAEWRqadtAKEKDAAIDQLR---------------EDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQ 475
Cdd:PRK03918 404 EEEISKITARIGELKKE----IKELKKAIEELKkakgkcpvcgrelteEHRKELLEEYTAELKRIEKELKEIEEKERKLR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 476 EEEVKLKAQVARSQQDIERYK-----------------QQLSLAVERERSLERDQVQLGLDWQRRCDDIERDQ--IQKSE 536
Cdd:PRK03918 480 KELRELEKVLKKESELIKLKElaeqlkeleeklkkynlEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEelKKKLA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 537 ALIQGLSMAKSQVA------------------AKLQETEQ----------ALQEQEVVLKAVTLERDQAVQALRMHGLPR 588
Cdd:PRK03918 560 ELEKKLDELEEELAellkeleelgfesveeleERLKELEPfyneylelkdAEKELEREEKELKKLEEELDKAFEELAETE 639
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 1034599168 589 PGAQMLlRQHEEEISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQI 639
Cdd:PRK03918 640 KRLEEL-RKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRR 689
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
124-694 |
5.92e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 54.07 E-value: 5.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 124 AALQDTRSQLEEAQGKLRCLQEDFVyNLQVLEERdlELERYDAAFAQAREWEEARRAEVSElKIEAAKLRQALAREArkv 203
Cdd:pfam12128 244 TKLQQEFNTLESAELRLSHLHFGYK-SDETLIAS--RQEERQETSAELNQLLRTLDDQWKE-KRDELNGELSAADAA--- 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 204 eelqqqqqlaFQEHRLELERVHSDKNGEIDHHREQY----ENLKwTLERKLEELDGELALQ---RQELLLEFESKMRKRE 276
Cdd:pfam12128 317 ----------VAKDRSELEALEDQHGAFLDADIETAaadqEQLP-SWQSELENLEERLKALtgkHQDVTAKYNRRRSKIK 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 277 HEF-RLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLED 355
Cdd:pfam12128 386 EQNnRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQ 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 356 KLHSVQLTRKKEEETFKRKHEELdRLAREKdAVLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLrraewrqadtakek 435
Cdd:pfam12128 466 LENFDERIERAREEQEAANAEVE-RLQSEL-RQARKRRDQASEALRQASRRLEERQSALDELELQL-------------- 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 436 DAAIDQLREDASTVKSAWDAQIAQL-SKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQV 514
Cdd:pfam12128 530 FPQAGTLLHFLRKEAPDWEQSIGKViSPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKA 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 515 QLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQAL--------QEQEVVLKAVTLERDQAVQALRMhgl 586
Cdd:pfam12128 610 EEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLrrlfdekqSEKDKKNKALAERKDSANERLNS--- 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 587 PRPGAQMLLRQHE---EEISKDFPSSEIQRL---REQNTSLRNAIAQMRKEMEALSHQipppiqtAAESTDA--NQPDPE 658
Cdd:pfam12128 687 LEAQLKQLDKKHQawlEEQKEQKREARTEKQaywQVVEGALDAQLALLKAAIAARRSG-------AKAELKAleTWYKRD 759
|
570 580 590
....*....|....*....|....*....|....*.
gi 1034599168 659 AGGDAATPDYVLALEAEIRTLKHKFKTLEKHLEDVL 694
Cdd:pfam12128 760 LASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVL 795
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
99-435 |
7.84e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 7.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 99 ALNELLLRKEEEWRALQAHRTQLQeAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEAR 178
Cdd:TIGR02169 685 GLKRELSSLQSELRRIENRLDELS-QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKEL 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 179 RAEVSELKIEAAKLRQAL----AREARKVEELQQQQQLAFQEHRLELERVHSDKNGEID--HHREQY-ENLKWTLERKLE 251
Cdd:TIGR02169 764 EARIEELEEDLHKLEEALndleARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNrlTLEKEYlEKEIQELQEQRI 843
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 252 ELDGELAL--QRQELLLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELE 329
Cdd:TIGR02169 844 DLKEQIKSieKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELK 923
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 330 RKLQSRAGELQDLEAMSRARVKDLEDK--LHSVQLTRKKEEETFkRKHEELDRLArekdavlvavkgahVEQLQELQTRV 407
Cdd:TIGR02169 924 AKLEALEEELSEIEDPKGEDEEIPEEElsLEDVQAELQRVEEEI-RALEPVNMLA--------------IQEYEEVLKRL 988
|
330 340
....*....|....*....|....*...
gi 1034599168 408 LELQAHCETLEAQLRRAEWRQADTAKEK 435
Cdd:TIGR02169 989 DELKEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
122-484 |
8.25e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.57 E-value: 8.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 122 QEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVleeRDLELERYDAAFAQAREWEEARRAEVSELKIEaaklrqaLAREAR 201
Cdd:pfam05483 416 EDEKLLDEKKQFEKIAEELKGKEQELIFLLQA---REKEIHDLEIQLTAIKTSEEHYLKEVEDLKTE-------LEKEKL 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 202 KVEELQQQQQLAFQEHRlELERVHSDKNGEIDHHREQYENLKWTLERKLEELD----------GELALQRQELLL---EF 268
Cdd:pfam05483 486 KNIELTAHCDKLLLENK-ELTQEASDMTLELKKHQEDIINCKKQEERMLKQIEnleekemnlrDELESVREEFIQkgdEV 564
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 269 ESKMRKREHEFRlqadNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAmsra 348
Cdd:pfam05483 565 KCKLDKSEENAR----SIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEI---- 636
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 349 RVKDLEDKLHSvqlTRKKEEETFK--RKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRV-LELQAHCETLEAQLRRAE 425
Cdd:pfam05483 637 KVNKLELELAS---AKQKFEEIIDnyQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIdKRCQHKIAEMVALMEKHK 713
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034599168 426 WRQADTAKEKDAAIDQLR---EDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQ 484
Cdd:pfam05483 714 HQYDKIIEERDSELGLYKnkeQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKME 775
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
231-649 |
1.02e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.85 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 231 EIDHHREQYENLKwTLERKLEELDGELALQRQELLlEFESKMRKREHEFRLQADNMSNTALSRELKvkLLHKELEALKEA 310
Cdd:COG4717 79 ELKEAEEKEEEYA-ELQEELEELEEELEELEAELE-ELREELEKLEKLLQLLPLYQELEALEAELA--ELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 311 GAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLV 390
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 391 -AVKGAHVEQLQELQT-----------------------RVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDA 446
Cdd:COG4717 235 eLEAAALEERLKEARLllliaaallallglggsllslilTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALE 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 447 STVKSAWDAQIAQLS----------KEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLER--DQV 514
Cdd:COG4717 315 ELEEEELEELLAALGlppdlspeelLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAalEQA 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 515 QLGLDWQRRCDDIERDQIQKSEALIQGLSMA-KSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQM 593
Cdd:COG4717 395 EEYQELKEELEELEEQLEELLGELEELLEALdEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAEL 474
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 1034599168 594 LLRQHEEEiskdfpsSEIQRLREQNTSLRNAIAQMRKEMEALSHQIPPPIQTAAES 649
Cdd:COG4717 475 LQELEELK-------AELRELAEEWAALKLALELLEEAREEYREERLPPVLERASE 523
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
107-639 |
1.27e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 1.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 107 KEEEWRALQAHRTQLQE------AALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRA 180
Cdd:TIGR02169 313 KERELEDAEERLAKLEAeidkllAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 181 EVSELKIEaaklRQALAREARKVEELQQQQQLAFQEHRLELERVHSDKNgEIDHHREQYENLKWTLERKLEELdgelalq 260
Cdd:TIGR02169 393 KLEKLKRE----INELKRELDRLQEELQRLSEELADLNAAIAGIEAKIN-ELEEEKEDKALEIKKQEWKLEQL------- 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 261 rQELLLEFESKMRKREHEFRlqadnmsntALSRELKVklLHKELEALkEAGAKAAESLQRAEATNAE-LERKLQSRAGEL 339
Cdd:TIGR02169 461 -AADLSKYEQELYDLKEEYD---------RVEKELSK--LQRELAEA-EAQARASEERVRGGRAVEEvLKASIQGVHGTV 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 340 QDL-----------EAMSRAR-----VKDLEDKLHSVQL--TRKKEEETF------KRKHEELDRLArEKDAVLVAVKGA 395
Cdd:TIGR02169 528 AQLgsvgeryataiEVAAGNRlnnvvVEDDAVAKEAIELlkRRKAGRATFlplnkmRDERRDLSILS-EDGVIGFAVDLV 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 396 HVEQ---------------LQELQT-RVLELQAHCETLEAQLRraewrqadtakEKDAAI---DQLREDASTVKSAWDAQ 456
Cdd:TIGR02169 607 EFDPkyepafkyvfgdtlvVEDIEAaRRLMGKYRMVTLEGELF-----------EKSGAMtggSRAPRGGILFSRSEPAE 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 457 IAQLSKEmvsrdlqIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRrcddiERDQIQKSE 536
Cdd:TIGR02169 676 LQRLRER-------LEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEK-----LKERLEELE 743
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 537 ALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMllRQHEEEIS------------- 603
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAEL--SKLEEEVSriearlreieqkl 821
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 1034599168 604 ------KDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQI 639
Cdd:TIGR02169 822 nrltleKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKK 863
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
122-720 |
1.30e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.81 E-value: 1.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 122 QEAALQDTRSQL---EEAQGKlRCLQEDFVYNL----------QVLEERDLELERYDAAFAQAREWEEARRAE------- 181
Cdd:pfam15921 182 HEGVLQEIRSILvdfEEASGK-KIYEHDSMSTMhfrslgsaisKILRELDTEISYLKGRIFPVEDQLEALKSEsqnkiel 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 182 ------------VSELKIEAAKLRQAlAREARKVEELQQQQQLAFQEHRLELERVH----SDKNGEIDHHREQYENLKWT 245
Cdd:pfam15921 261 llqqhqdrieqlISEHEVEITGLTEK-ASSARSQANSIQSQLEIIQEQARNQNSMYmrqlSDLESTVSQLRSELREAKRM 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 246 LERKLEELDGELALQRQELllefeSKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATN 325
Cdd:pfam15921 340 YEDKIEELEKQLVLANSEL-----TEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITI 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 326 AELERKLQSRAGELQDLEAMSRARVKDLEDKLhsvqltrKKEEETFKRKHEELDRlarekdavlVAVKGAHVEQLQELQT 405
Cdd:pfam15921 415 DHLRRELDDRNMEVQRLEALLKAMKSECQGQM-------ERQMAAIQGKNESLEK---------VSSLTAQLESTKEMLR 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 406 RVLE-LQAHCETLEAQLRRAEWRQAdTAKEKDAAIDQLREDASTVKSAWDAQIAQLsKEMVSRDLQIQTLQEEEVKLKAQ 484
Cdd:pfam15921 479 KVVEeLTAKKMTLESSERTVSDLTA-SLQEKERAIEATNAEITKLRSRVDLKLQEL-QHLKNEGDHLRNVQTECEALKLQ 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 485 VARSQQDIERYKQQL----SLAVERERSLERDQVQLGldwqrrcdDIERdQIQKSEALIQGLSMAKSQVAAKLQETEQAL 560
Cdd:pfam15921 557 MAEKDKVIEILRQQIenmtQLVGQHGRTAGAMQVEKA--------QLEK-EINDRRLELQEFKILKDKKDAKIRELEARV 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 561 QEQEvvlkavtLERDQAVQAlrmhglprpGAQMLlrqheeeiskdfpsSEIQRLREQNTSLRNAIAQMRKEMEALSHqip 640
Cdd:pfam15921 628 SDLE-------LEKVKLVNA---------GSERL--------------RAVKDIKQERDQLLNEVKTSRNELNSLSE--- 674
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 641 ppiqtaaestdanqpdpeaggdaatpdyvlaleaEIRTLKHKFKTLEKHLEDVLDPLKMSSPHAESQ-PSVRTSTETTGG 719
Cdd:pfam15921 675 ----------------------------------DYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSElEQTRNTLKSMEG 720
|
.
gi 1034599168 720 S 720
Cdd:pfam15921 721 S 721
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
124-691 |
1.77e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.28 E-value: 1.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 124 AALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDleleRYDAAFAQAREWEEARRAEVSELkiEAAKLRQALAREARKV 203
Cdd:TIGR00618 222 QVLEKELKHLREALQQTQQSHAYLTQKREAQEEQL----KKQQLLKQLRARIEELRAQEAVL--EETQERINRARKAAPL 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 204 EELQQQQQLAFQEHRLELERVHSDKNgEIDHHREQYENLKWTLERKLEELDGELALQRQELLL------------EFESK 271
Cdd:TIGR00618 296 AAHIKAVTQIEQQAQRIHTELQSKMR-SRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIrdahevatsireISCQQ 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 272 MRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAM------ 345
Cdd:TIGR00618 375 HTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITctaqce 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 346 ---------SRARVKDLEDKLHSVQLTRKKEEET------FKRKHEELDRLAREK------DAVLVAVKGAHVEQLQELQ 404
Cdd:TIGR00618 455 klekihlqeSAQSLKEREQQLQTKEQIHLQETRKkavvlaRLLELQEEPCPLCGScihpnpARQDIDNPGPLTRRMQRGE 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 405 TRVLELQAHCETLEAQLrRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKL--- 481
Cdd:TIGR00618 535 QTYAQLETSEEDVYHQL-TSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLace 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 482 ------KAQVARSQQDIERYKQQLSLAVERER-SLERDQVQLGLDWQR----RCDDIERDQIQKSEALIQGLSMAKSQVA 550
Cdd:TIGR00618 614 qhallrKLQPEQDLQDVRLHLQQCSQELALKLtALHALQLTLTQERVRehalSIRVLPKELLASRQLALQKMQSEKEQLT 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 551 AKLQETEQ---ALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEISKDFPSS-EIQRLREQNTSLRNAIA 626
Cdd:TIGR00618 694 YWKEMLAQcqtLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVlKARTEAHFNNNEEVTAA 773
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034599168 627 QMRKEMEALSHQIPPPIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKHKFKTLEKHLE 691
Cdd:TIGR00618 774 LQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLE 838
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
160-692 |
2.71e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 51.65 E-value: 2.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 160 ELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERV--HSDKNGEIDHHRE 237
Cdd:pfam05483 100 ELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCarSAEKTKKYEYERE 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 238 QYENLKWTLERKLEELdgelalqrqelLLEFEskmrkrehEFRLQADNmsnTALSRELKVKLLHKELEALKEAGAKaaeS 317
Cdd:pfam05483 180 ETRQVYMDLNNNIEKM-----------ILAFE--------ELRVQAEN---ARLEMHFKLKEDHEKIQHLEEEYKK---E 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 318 LQRAEATNAELERKLQSRAGELQDLEAM---SRARVKDLEDKlhsvqltRKKEEETFKRKHEELDRLAREKDAVLVAVK- 393
Cdd:pfam05483 235 INDKEKQVSLLLIQITEKENKMKDLTFLleeSRDKANQLEEK-------TKLQDENLKELIEKKDHLTKELEDIKMSLQr 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 394 -----GAHVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLskEMVSRD 468
Cdd:pfam05483 308 smstqKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQL--KIITME 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 469 LQIQTLQEEEV------------KLKAQVARSQQDIERYKQQLSLAVErersLERDQVQLGLDWQRRCDDIERDQIQkse 536
Cdd:pfam05483 386 LQKKSSELEEMtkfknnkeveleELKKILAEDEKLLDEKKQFEKIAEE----LKGKEQELIFLLQAREKEIHDLEIQ--- 458
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 537 alIQGLSMAKSQVAAKLQETEQALQEQEvvLKAVTLERDQAVQALRMHGLPRPGAQMLL--RQHEEEISKDFPSSE---- 610
Cdd:pfam05483 459 --LTAIKTSEEHYLKEVEDLKTELEKEK--LKNIELTAHCDKLLLENKELTQEASDMTLelKKHQEDIINCKKQEErmlk 534
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 611 -IQRLREQNTSLRNAIAQMRKEMEALSHQIPPPIQTAAESTDANQPDpeaggdaatpdyVLALEAEIRTLKHKFKTLEKH 689
Cdd:pfam05483 535 qIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYE------------VLKKEKQMKILENKCNNLKKQ 602
|
...
gi 1034599168 690 LED 692
Cdd:pfam05483 603 IEN 605
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
246-471 |
4.23e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.17 E-value: 4.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 246 LERKLEELDGELALQRQELLlEFESKMRkrehEFRLQadnmsNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATN 325
Cdd:COG3206 173 ARKALEFLEEQLPELRKELE-EAEAALE----EFRQK-----NGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 326 AELERKLQSRAGELQDLeaMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQT 405
Cdd:COG3206 243 AALRAQLGSGPDALPEL--LQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEA 320
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034599168 406 RVLELQAHCETLEAQLRRAEwRQADTAKEKDAAIDQLREDASTVKSAWDA-----QIAQLSKEMVSRDLQI 471
Cdd:COG3206 321 ELEALQAREASLQAQLAQLE-ARLAELPELEAELRRLEREVEVARELYESllqrlEEARLAEALTVGNVRV 390
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
300-467 |
5.40e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.15 E-value: 5.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 300 LHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLeamsRARVKDLEDKLHSVQLTR-----KKEEETFKRK 374
Cdd:COG1579 29 LPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEV----EARIKKYEEQLGNVRNNKeyealQKEIESLKRR 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 375 HEELDRLAREKDavlvavkgahvEQLQELQTRVLELQAHCETLEAQLRRAEwrqadtaKEKDAAIDQLREDASTVKSAWD 454
Cdd:COG1579 105 ISDLEDEILELM-----------ERIEELEEELAELEAELAELEAELEEKK-------AELDEELAELEAELEELEAERE 166
|
170
....*....|...
gi 1034599168 455 AQIAQLSKEMVSR 467
Cdd:COG1579 167 ELAAKIPPELLAL 179
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
108-515 |
8.63e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 50.34 E-value: 8.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 108 EEEWRALQAHRTQLQEA-----ALQDTRSQLEEAQGKLRCLQEdfvynlqVLEERDLELERYDAAFAQAREweearraEV 182
Cdd:COG3096 326 EQDYQAASDHLNLVQTAlrqqeKIERYQEDLEELTERLEEQEE-------VVEEAAEQLAEAEARLEAAEE-------EV 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 183 SELKIEAAKLRQALAREARKveelqqqqQLAFQEHRLELERVHSdKNGEIDHHREQYENLKWTLERKLEELDGELALQRQ 262
Cdd:COG3096 392 DSLKSQLADYQQALDVQQTR--------AIQYQQAVQALEKARA-LCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQ 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 263 ELLLefeSKMRKREHEFRLQAdnmsntalsrelkVKLLHKELEAlKEAGAKAAESLQRAeatnaeleRKLQSRAGELQDL 342
Cdd:COG3096 463 KLSV---ADAARRQFEKAYEL-------------VCKIAGEVER-SQAWQTARELLRRY--------RSQQALAQRLQQL 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 343 eamsRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDrlarekdavlvavkgaHVEQLQELQtrvLELQAHCETLEAQLR 422
Cdd:COG3096 518 ----RAQLAELEQRLRQQQNAERLLEEFCQRIGQQLD----------------AAEELEELL---AELEAQLEELEEQAA 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 423 RAEWRQADTAKEKdaaiDQLRedastvksawdAQIAQLSKemvsRDLQIQTLQEEEVKLKAQVAR---SQQDIERYKQQL 499
Cdd:COG3096 575 EAVEQRSELRQQL----EQLR-----------ARIKELAA----RAPAWLAAQDALERLREQSGEalaDSQEVTAAMQQL 635
|
410
....*....|....*.
gi 1034599168 500 sLAVERERSLERDQVQ 515
Cdd:COG3096 636 -LEREREATVERDELA 650
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
283-640 |
1.20e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.95 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 283 ADNMSNTALSRELKVKLLHKElEALKEAGAKAAESLQRAEATNAELErKLQSRAGEL-QDLEAMSrarvkdleDKLHSVQ 361
Cdd:COG3096 271 ADYMRHANERRELSERALELR-RELFGARRQLAEEQYRLVEMARELE-ELSARESDLeQDYQAAS--------DHLNLVQ 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 362 lTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHvEQLQELQTRVLELQAHCETLEAQL-----------RRA-EWRQA 429
Cdd:COG3096 341 -TALRQQEKIERYQEDLEELTERLEEQEEVVEEAA-EQLAEAEARLEAAEEEVDSLKSQLadyqqaldvqqTRAiQYQQA 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 430 DTAKEKdaAIDQLREDASTVKSAWDAQIAQLSKEmvsrDLQIQTLQEEEVKLK-AQVARSQQDiERYK--QQLSLAVERE 506
Cdd:COG3096 419 VQALEK--ARALCGLPDLTPENAEDYLAAFRAKE----QQATEEVLELEQKLSvADAARRQFE-KAYElvCKIAGEVERS 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 507 RSLERDQvQLGLDWqrrcddieRDQiqksEALIQGLSmaksQVAAKLQETEQALQEQEVVlkavtleRDQAVQALRMHGL 586
Cdd:COG3096 492 QAWQTAR-ELLRRY--------RSQ----QALAQRLQ----QLRAQLAELEQRLRQQQNA-------ERLLEEFCQRIGQ 547
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1034599168 587 PRPGAQMLLRQHEE-EISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIP 640
Cdd:COG3096 548 QLDAAEELEELLAElEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAP 602
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
108-515 |
1.34e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.73 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 108 EEEWRALQAHRTQLQEAAlqDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAEVSELKI 187
Cdd:pfam15921 447 ERQMAAIQGKNESLEKVS--SLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRS 524
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 188 EA-AKLR--QALAREARKVEELQQQQQLafqehrLELERVHSDKNGEIdhHREQYENLKWTLERKLEELDgelALQRQEL 264
Cdd:pfam15921 525 RVdLKLQelQHLKNEGDHLRNVQTECEA------LKLQMAEKDKVIEI--LRQQIENMTQLVGQHGRTAG---AMQVEKA 593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 265 LLEFESKMRKRE-HEFRLQADNmsNTALSRELKVKLLHKELEALK--EAGAKAAESLQRAEATNAELERKLQSRAGELQD 341
Cdd:pfam15921 594 QLEKEINDRRLElQEFKILKDK--KDAKIRELEARVSDLELEKVKlvNAGSERLRAVKDIKQERDQLLNEVKTSRNELNS 671
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 342 LEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRlAREKDAVLVAVKGAHVEQLQELQTRVLELQAHCETLEAQL 421
Cdd:pfam15921 672 LSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQ-TRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKI 750
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 422 RRAEWRQADTAKEKDAaidqLREDastvKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQ------------ 489
Cdd:pfam15921 751 QFLEEAMTNANKEKHF----LKEE----KNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEvaldkaslqfae 822
|
410 420
....*....|....*....|....*..
gi 1034599168 490 -QDIERYKQQLSLAVERERSLERDQVQ 515
Cdd:pfam15921 823 cQDIIQRQEQESVRLKLQHTLDVKELQ 849
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
287-520 |
1.40e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 287 SNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAmsraRVKDLEDKLHSVQLTRKK 366
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ----ELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 367 EEETFKRKHEELDRLAR------EKDAVLVAVKGAHVEQ----LQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKd 436
Cdd:COG4942 95 LRAELEAQKEELAELLRalyrlgRQPPLALLLSPEDFLDavrrLQYLKYLAPARREQAEELRADLAELAALRAELEAER- 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 437 AAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQL 516
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKG 253
|
....
gi 1034599168 517 GLDW 520
Cdd:COG4942 254 KLPW 257
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
409-641 |
4.26e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 4.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 409 ELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDastvksawDAQIAQLSKemvsrdlQIQTLQEEEVKLKAQVARS 488
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL--------ERRIAALAR-------RIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 489 QQDIERYKQQL--------SLAVERERSLERDQVQLGLDwQRRCDDIERDQI------QKSEALIQGLSMAKSQVAAKLQ 554
Cdd:COG4942 89 EKEIAELRAELeaqkeelaELLRALYRLGRQPPLALLLS-PEDFLDAVRRLQylkylaPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 555 ETEQALQEQEVVLKAVTLERDQAVQALRMHglprpgaQMLLRQHEEEISKDfpSSEIQRLREQNTSLRNAIAQMRKEMEA 634
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAER-------QKLLARLEKELAEL--AAELAELQQEAEELEALIARLEAEAAA 238
|
....*..
gi 1034599168 635 LSHQIPP 641
Cdd:COG4942 239 AAERTPA 245
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
260-495 |
4.35e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 47.70 E-value: 4.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 260 QRQEL---LLEFE--SKMRK----REHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELER 330
Cdd:PHA02562 151 ARRKLvedLLDISvlSEMDKlnkdKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAK 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 331 KLQSRAGELQD-LEAMsrarVKDLED------KLHSVQLTRKKEEETFKRKHEELdrlarEKDAVLVAVKGA---HVEQL 400
Cdd:PHA02562 231 TIKAEIEELTDeLLNL----VMDIEDpsaalnKLNTAAAKIKSKIEQFQKVIKMY-----EKGGVCPTCTQQiseGPDRI 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 401 QELQTRVLELQAHCETL-----EAQLRRAEWRQAD-TAKEKDAAIDQLREDAST-VKSAWDAQ--IAQLSKEMVSRDLQI 471
Cdd:PHA02562 302 TKIKDKLKELQHSLEKLdtaidELEEIMDEFNEQSkKLLELKNKISTNKQSLITlVDKAKKVKaaIEELQAEFVDNAEEL 381
|
250 260
....*....|....*....|....
gi 1034599168 472 QTLQEEEVKLKAQVARSQQDIERY 495
Cdd:PHA02562 382 AKLQDELDKIVKTKSELVKEKYHR 405
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
100-582 |
5.55e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.66 E-value: 5.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 100 LNELLLRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEDFVY-----NLQVLEERDLELERYDAAFAQAREW 174
Cdd:pfam02463 241 LLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLlakeeEELKSELLKLERRKVDDEEKLKESE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 175 EEARRAEVSELKIEAAKLRQ----ALAREARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKW------ 244
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELekelKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEeelelk 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 245 -------TLERKLEELDGELALQRQELLLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLH---KELEALKEAGAKA 314
Cdd:pfam02463 401 seeekeaQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDElelKKSEDLLKETQLV 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 315 AESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKrkhEELDRLAREKDAVLVAVKG 394
Cdd:pfam02463 481 KLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAV---ENYKVAISTAVIVEVSATA 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 395 AHVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMvsrDLQIQTL 474
Cdd:pfam02463 558 DEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEG---ILKDTEL 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 475 QEEEVKLKAQVARSQQDIERykqQLSLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQ 554
Cdd:pfam02463 635 TKLKESAKAKESGLRKGVSL---EEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEE 711
|
490 500
....*....|....*....|....*...
gi 1034599168 555 ETEQALQEQEVVLKAVTLERDQAVQALR 582
Cdd:pfam02463 712 LKKLKLEAEELLADRVQEAQDKINEELK 739
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
99-602 |
6.93e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.09 E-value: 6.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 99 ALNELLLRKEEEWRALQAHRTQLQeAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEAR 178
Cdd:pfam01576 500 SLQEQLEEEEEAKRNVERQLSTLQ-AQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRL 578
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 179 RAEVSELKIEAAKLRQ---ALAREARKVEELQQQQQLAFQEHRLELERVHSDKngeidhhREQyENLKWTLERKLEELDG 255
Cdd:pfam01576 579 QQELDDLLVDLDHQRQlvsNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEA-------REK-ETRALSLARALEEALE 650
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 256 ---ELALQRQELLLEFESKMR------KREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQraeATNA 326
Cdd:pfam01576 651 akeELERTNKQLRAEMEDLVSskddvgKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQ---ALKA 727
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 327 ELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAhVEQLQELQTR 406
Cdd:pfam01576 728 QFERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREEA-VKQLKKLQAQ 806
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 407 VLELQAHCEtlEAQLRRAEWRQADTAKEK-----DAAIDQLREDASTVKSA---WDAQIAQLSKEMVSRDLQIQTLQEEE 478
Cdd:pfam01576 807 MKDLQRELE--EARASRDEILAQSKESEKklknlEAELLQLQEDLAASERArrqAQQERDELADEIASGASGKSALQDEK 884
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 479 VKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRrcddiERDQIQKSEALIQGLSMAKSQVAAKLQETEQ 558
Cdd:pfam01576 885 RRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAA-----ERSTSQKSESARQQLERQNKELKAKLQEMEG 959
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 1034599168 559 ALQ-EQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEI 602
Cdd:pfam01576 960 TVKsKFKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKL 1004
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
102-389 |
1.02e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.89 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 102 ELLLRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAaFAQAREWEEARRAE 181
Cdd:pfam02463 728 QEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK-EEKLKAQEEELRAL 806
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 182 VSELKIEAAKLRQalaREARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKWTLERKLEELDGELALQR 261
Cdd:pfam02463 807 EEELKEEAELLEE---EQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQK 883
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 262 QEL---LLEFESKMRKREHEFRLQADNMSNTALSR------ELKVKLLHKELEALKEAGAKAAEslQRAEATNAELERKL 332
Cdd:pfam02463 884 LKDeleSKEEKEKEEKKELEEESQKLNLLEEKENEieerikEEAEILLKYEEEPEELLLEEADE--KEKEENNKEEEEER 961
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1034599168 333 QSRagELQDLEAMSRARVKDLEDKlhsvqltrKKEEETFKRKHEELDRLAREKDAVL 389
Cdd:pfam02463 962 NKR--LLLAKEELGKVNLMAIEEF--------EEKEERYNKDELEKERLEEEKKKLI 1008
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
133-461 |
2.18e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.73 E-value: 2.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 133 LEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQArEWEEARRAEVSELKIEAAKLRQalarEARKVEELQQQQQL 212
Cdd:pfam02463 176 KKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQ-LKEKLELEEEYLLYLDYLKLNE----ERIDLLQELLRDEQ 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 213 AFQEHRLELERVHSDKNGEIDHHREQYENLKWTLERKLEELDGELALQRQELLLEfesKMRKREHEFRLQADNMSNTALS 292
Cdd:pfam02463 251 EEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKL---ERRKVDDEEKLKESEKEKKKAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 293 RELK-----VKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEdKLHSVQLTRKKE 367
Cdd:pfam02463 328 KELKkekeeIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKE-EELELKSEEEKE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 368 EETFKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRVLELQAHCETLEaqLRRAEWRQADTAKEKDAAIDQLREDAS 447
Cdd:pfam02463 407 AQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQE--LKLLKDELELKKSEDLLKETQLVKLQE 484
|
330
....*....|....
gi 1034599168 448 TVKSAWDAQIAQLS 461
Cdd:pfam02463 485 QLELLLSRQKLEER 498
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
328-563 |
2.34e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 2.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 328 LERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQltrkKEEETFKRKHEELDrLAREKDAVLVAVKGAhVEQLQELQTRV 407
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAE----AALEEFRQKNGLVD-LSEEAKLLLQQLSEL-ESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 408 LELQAHCETLEAQLRRAEWRQADTAKekDAAIDQLREDASTVKsawdAQIAQLSK-------EMVSRDLQIQTLQEE--- 477
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPELLQ--SPVIQQLRAQLAELE----AELAELSArytpnhpDVIALRAQIAALRAQlqq 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 478 -----EVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLgldwqrrcDDIERDqIQKSEALIQGLsmaksqvAAK 552
Cdd:COG3206 310 eaqriLASLEAELEALQAREASLQAQLAQLEARLAELPELEAEL--------RRLERE-VEVARELYESL-------LQR 373
|
250
....*....|.
gi 1034599168 553 LQETEQALQEQ 563
Cdd:COG3206 374 LEEARLAEALT 384
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
131-587 |
2.69e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 45.28 E-value: 2.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 131 SQLEEAQGKLRCLQEDFVYNLQVLEERD------LELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQALAREARKVE 204
Cdd:PRK01156 322 NKYHAIIKKLSVLQKDYNDYIKKKSRYDdlnnqiLELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQE 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 205 ELQQQQQLAFQEHRLELERVHSD---KNGEIDHHREQYENLkwtlERKLEELDGELALQRQELLLEFESKMRKREHefrl 281
Cdd:PRK01156 402 IDPDAIKKELNEINVKLQDISSKvssLNQRIRALRENLDEL----SRNMEMLNGQSVCPVCGTTLGEEKSNHIINH---- 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 282 qadnMSNTALSRELKVKLLHKELEALKEagaKAAESLQRAEATNAELERKLQSRAGELQDLeamsRARVKDLEDKLhsvq 361
Cdd:PRK01156 474 ----YNEKKSRLEEKIREIEIEVKDIDE---KIVDLKKRKEYLESEEINKSINEYNKIESA----RADLEDIKIKI---- 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 362 lTRKKEEETfkrKHEELDRlarekdavlvAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRAewRQADTAKEKDAAIDQ 441
Cdd:PRK01156 539 -NELKDKHD---KYEEIKN----------RYKSLKLEDLDSKRTSWLNALAVISLIDIETNRS--RSNEIKKQLNDLESR 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 442 LREDAST---VKSAWDAQIAQLSKEMVSRDLQIQTLQEeevkLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLG- 517
Cdd:PRK01156 603 LQEIEIGfpdDKSYIDKSIREIENEANNLNNKYNEIQE----NKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINd 678
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034599168 518 ----LDWQR-RCDDIERDQIQKsEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTlERDQAVQALRMHGLP 587
Cdd:PRK01156 679 iednLKKSRkALDDAKANRARL-ESTIEILRTRINELSDRINDINETLESMKKIKKAIG-DLKRLREAFDKSGVP 751
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
249-699 |
2.80e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 2.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 249 KLEELDGELalqrqeLLLEFESKMRKrehefrlqaDNMSNtalsRELKVKLLHKELEALKEAGAKAAESLQRAEATNAEL 328
Cdd:TIGR04523 97 KINKLNSDL------SKINSEIKNDK---------EQKNK----LEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKL 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 329 ERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEE---------ETFKRKHEELdrlarEKDavLVAVKgahvEQ 399
Cdd:TIGR04523 158 NNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLklelllsnlKKKIQKNKSL-----ESQ--ISELK----KQ 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 400 LQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAwDAQIAQLSKEMVSRDLQIQTLQEE-- 477
Cdd:TIGR04523 227 NNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQN-NKKIKELEKQLNQLKSEISDLNNQke 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 478 -----EVK------------LKAQVARSQQDIERYKQQLSlavererSLERDQVQLGLDWQRRCDDIER--DQIQKSEAL 538
Cdd:TIGR04523 306 qdwnkELKselknqekkleeIQNQISQNNKIISQLNEQIS-------QLKKELTNSESENSEKQRELEEkqNEIEKLKKE 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 539 IQGLSMAKSQVAAKLQETEQALQEQEVVLKavtlERDQAVQALRmhglprpgaqmllrQHEEEISKdfpssEIQRLREQN 618
Cdd:TIGR04523 379 NQSYKQEIKNLESQINDLESKIQNQEKLNQ----QKDEQIKKLQ--------------QEKELLEK-----EIERLKETI 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 619 TSLRNAIAQMRKEMEALSHQIpppiqtaaESTDANQPDPEaggdaatpDYVLALEAEIRTLKHKFKTLEKHLEDVLDPLK 698
Cdd:TIGR04523 436 IKNNSEIKDLTNQDSVKELII--------KNLDNTRESLE--------TQLKVLSRSINKIKQNLEQKQKELKSKEKELK 499
|
.
gi 1034599168 699 M 699
Cdd:TIGR04523 500 K 500
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
434-582 |
4.83e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.99 E-value: 4.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 434 EKDAAIDQLREDASTVK---SAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAvererSLE 510
Cdd:COG1579 14 ELDSELDRLEHRLKELPaelAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNV-----RNN 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034599168 511 RDQVQLgldwQRRCDDIERdQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALR 582
Cdd:COG1579 89 KEYEAL----QKEIESLKR-RISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELE 155
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
226-698 |
4.91e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.24 E-value: 4.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 226 SDKNGEIDHHREQYENLK---WTLERKLEELDGElalQRQELLLEFESKMRKREHEFR---LQADNmSNTALSRelkvkl 299
Cdd:TIGR04523 270 SEKQKELEQNNKKIKELEkqlNQLKSEISDLNNQ---KEQDWNKELKSELKNQEKKLEeiqNQISQ-NNKIISQ------ 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 300 LHKELEALKEagakaaeSLQRAEATNAELERKLQSRAGELQDLEamsrarvKDLEDKLHSVQ-LTRKKEEetFKRKHEEL 378
Cdd:TIGR04523 340 LNEQISQLKK-------ELTNSESENSEKQRELEEKQNEIEKLK-------KENQSYKQEIKnLESQIND--LESKIQNQ 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 379 DRLAREKDavlvavkgahvEQLQELQTRVLELQAHCETLEAQlrraewrqadTAKEKDAaIDQLREDastvKSAWDAQIA 458
Cdd:TIGR04523 404 EKLNQQKD-----------EQIKKLQQEKELLEKEIERLKET----------IIKNNSE-IKDLTNQ----DSVKELIIK 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 459 QLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLgldwqrrcddieRDQIQKSEAL 538
Cdd:TIGR04523 458 NLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDL------------TKKISSLKEK 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 539 IQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDqavqalrmhglprpgaqmlLRQHEEEISKdfpsseiqrLREQN 618
Cdd:TIGR04523 526 IEKLESEKKEKESKISDLEDELNKDDFELKKENLEKE-------------------IDEKNKEIEE---------LKQTQ 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 619 TSLRNA-------IAQMRKEMEALSHQIPPPIQTAAESTD----ANQPDPEaggdaatpdyvlaLEAEIRTLKHKFKTLE 687
Cdd:TIGR04523 578 KSLKKKqeekqelIDQKEKEKKDLIKEIEEKEKKISSLEKelekAKKENEK-------------LSSIIKNIKSKKNKLK 644
|
490
....*....|.
gi 1034599168 688 KHLEDVLDPLK 698
Cdd:TIGR04523 645 QEVKQIKETIK 655
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
220-510 |
5.77e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.24 E-value: 5.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 220 ELERVHSDKNGEIDHHREQYENLKWTLERKLEELDgELALQRQELllefESKMRKREHEfrlqadnmsNTALSRELKVK- 298
Cdd:TIGR04523 353 NSESENSEKQRELEEKQNEIEKLKKENQSYKQEIK-NLESQINDL----ESKIQNQEKL---------NQQKDEQIKKLq 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 299 ----LLHKELEALKEAGAKAAESLQRAEATNAELERKLQsragELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRK 374
Cdd:TIGR04523 419 qekeLLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIK----NLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSK 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 375 HEELDRLAREKDAVlvavkgahVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQL-REDASTVKSAW 453
Cdd:TIGR04523 495 EKELKKLNEEKKEL--------EEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELkKENLEKEIDEK 566
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034599168 454 DAQIAQLSKEMVS-------RDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLE 510
Cdd:TIGR04523 567 NKEIEELKQTQKSlkkkqeeKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLS 630
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
247-677 |
5.91e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 44.18 E-value: 5.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 247 ERKLEELDGELALQRQELLL-EFESKMRKREH--EFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEA 323
Cdd:COG5185 150 EASYGEVETGIIKDIFGKLTqELNQNLKKLEIfgLTLGLLKGISELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEII 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 324 TNAELERKLQSRAGELQDLEAMSRA--RVKDLEDKLHSVQLTRKKEeeTFKRKHEELDRLAREKDAvlvavkgaHVEQLQ 401
Cdd:COG5185 230 NIEEALKGFQDPESELEDLAQTSDKleKLVEQNTDLRLEKLGENAE--SSKRLNENANNLIKQFEN--------TKEKIA 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 402 ELqTRVLELQAHCETLEAQLRRAEWRQ--ADTAKEKDAAIDQLredastvksawdaqIAQLSKEMVSRDLQIQTLQE--E 477
Cdd:COG5185 300 EY-TKSIDIKKATESLEEQLAAAEAEQelEESKRETETGIQNL--------------TAEIEQGQESLTENLEAIKEeiE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 478 EVKLKAQVARSQQDIERYKQQLslaverERSLERDQVQLGlDWQRRCDDIErdqiqksEALIQGLSMAKSQVAAKLQETE 557
Cdd:COG5185 365 NIVGEVELSKSSEELDSFKDTI------ESTKESLDEIPQ-NQRGYAQEIL-------ATLEDTLKAADRQIEELQRQIE 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 558 QALQE-QEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEIskdfpSSEIQRLREQNTSLRNAIAQMRKEMEALS 636
Cdd:COG5185 431 QATSSnEEVSKLLNELISELNKVMREADEESQSRLEEAYDEINRSV-----RSKKEDLNEELTQIESRVSTLKATLEKLR 505
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 1034599168 637 HQIPPPIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIR 677
Cdd:COG5185 506 AKLERQLEGVRSKLDQVAESLKDFMRARGYAHILALENLIP 546
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
105-360 |
6.17e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 6.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 105 LRKEEEWRALQAHRTQLQEAALQD--TRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAEV 182
Cdd:TIGR02169 763 LEARIEELEEDLHKLEEALNDLEArlSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR 842
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 183 SELKIEAAKLRQALAR-EARKVEELQQQQQLAFQEhrLELERVHSDKNGEIDHHREQYEN-------LKWTLERKlEELD 254
Cdd:TIGR02169 843 IDLKEQIKSIEKEIENlNGKKEELEEELEELEAAL--RDLESRLGDLKKERDELEAQLRElerkieeLEAQIEKK-RKRL 919
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 255 GELALQRQELLLEFESKMRKREHEFRLQADNMSNTALsrELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQS 334
Cdd:TIGR02169 920 SELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDV--QAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAK 997
|
250 260
....*....|....*....|....*.
gi 1034599168 335 RAGELQDLeamsRARVKDLEDKLHSV 360
Cdd:TIGR02169 998 LEEERKAI----LERIEEYEKKKREV 1019
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
428-678 |
6.48e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 6.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 428 QADT-AKEKDAAIDQLREDASTVKS---AWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSlav 503
Cdd:COG3883 13 FADPqIQAKQKELSELQAELEAAQAeldALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG--- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 504 ERERSLERDQVQLGL-----------DWQRRCDDIER------DQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVV 566
Cdd:COG3883 90 ERARALYRSGGSVSYldvllgsesfsDFLDRLSALSKiadadaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 567 LKAvtLERDQAVQALRMHGLPRPGAQMLLRQHEEEISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEALshQIPPPIQTA 646
Cdd:COG3883 170 KAE--LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAA--AAAAAAAAS 245
|
250 260 270
....*....|....*....|....*....|..
gi 1034599168 647 AESTDANQPDPEAGGDAATPDYVLALEAEIRT 678
Cdd:COG3883 246 AAGAGAAGAAGAAAGSAGAAGAAAGAAGAGAA 277
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
58-517 |
7.14e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.80 E-value: 7.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 58 AHEQSVLPQTRRVSFGSVPTPPAWREVRPQAATMLPLGSEPALNELLLRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQ 137
Cdd:TIGR00618 409 QATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRK 488
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 138 GKLRclqEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQALArEARKVEELQQQQQLAFQEH 217
Cdd:TIGR00618 489 KAVV---LARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEE-DVYHQLTSERKQRASLKEQ 564
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 218 RLELERVHSDKNGEIDHHREQYENLKWTLERKLEELDGELALQRQeLLLEFESKMRKREHEFRLQADNMSNTALSRELKV 297
Cdd:TIGR00618 565 MQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDM-LACEQHALLRKLQPEQDLQDVRLHLQQCSQELAL 643
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 298 KLLHKELEALKEAGAKAAESLQRaeaTNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEetfkrKHEE 377
Cdd:TIGR00618 644 KLTALHALQLTLTQERVREHALS---IRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELET-----HIEE 715
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 378 LDRLAREkdavlvavkgahveQLQELQTRVLELQAHCETLEAQLRRAEwRQADTAKEKDAAIDQLREDASTVKSAWDAQI 457
Cdd:TIGR00618 716 YDREFNE--------------IENASSSLGSDLAAREDALNQSLKELM-HQARTVLKARTEAHFNNNEEVTAALQTGAEL 780
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034599168 458 AQLSKEMVSRDLQIQTLQEEEVKLKAQ---------------VARSQQDIERYKQQLSLAVERERSLERDQVQLG 517
Cdd:TIGR00618 781 SHLAAEIQFFNRLREEDTHLLKTLEAEigqeipsdedilnlqCETLVQEEEQFLSRLEEKSATLGEITHQLLKYE 855
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
170-435 |
8.54e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 8.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 170 QAREWEEARRAEVSELKIEAAKLRQAlarearkveelqqqqqLAFQEHrlelERVHSDKNGEIDhhREQYENLKWTLERk 249
Cdd:pfam17380 308 KAREVERRRKLEEAEKARQAEMDRQA----------------AIYAEQ----ERMAMERERELE--RIRQEERKRELER- 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 250 leeldgelaLQRQELLLEFeSKMRKREhefRLQAD-NMSNTALSREL----KVKLLHKELEALKEAGAKAAESL--QRAE 322
Cdd:pfam17380 365 ---------IRQEEIAMEI-SRMRELE---RLQMErQQKNERVRQELeaarKVKILEEERQRKIQQQKVEMEQIraEQEE 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 323 ATNAELERKLQSRAGElqdleaMSRARVKDLEdKLHSVQLTRKKEEETfKRKHEELDRLAREKDAVLVAVKGAHVEQLQE 402
Cdd:pfam17380 432 ARQREVRRLEEERARE------MERVRLEEQE-RQQQVERLRQQEEER-KRKKLELEKEKRDRKRAEEQRRKILEKELEE 503
|
250 260 270
....*....|....*....|....*....|...
gi 1034599168 403 LQTRVLELQAHCETLEAQLrraEWRQADTAKEK 435
Cdd:pfam17380 504 RKQAMIEEERKRKLLEKEM---EERQKAIYEEE 533
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
94-516 |
9.78e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 43.19 E-value: 9.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 94 LGSEPALNELLLRKEEEWRALQAHRTQLQE--AALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQA 171
Cdd:pfam05557 23 LEHKRARIELEKKASALKRQLDRESDRNQElqKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKESQLADA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 172 REWEEARRAEVSELKIEAAKLRQALAREARKVEELQqqqqlafQEHRLELERVhsdkngeidhhrEQYENLKWTLERKle 251
Cdd:pfam05557 103 REVISCLKNELSELRRQIQRAELELQSTNSELEELQ-------ERLDLLKAKA------------SEAEQLRQNLEKQ-- 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 252 eldgelalqrQELLLEFESKMRKREHEFRLQADN--MSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELE 329
Cdd:pfam05557 162 ----------QSSLAEAEQRIKELEFEIQSQEQDseIVKNSKSELARIPELEKELERLREHNKHLNENIENKLLLKEEVE 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 330 rKLQSRAGELQDleamSRARVKDLEDKLHSVQLTRKKEEETFKRKHEEL---DRLARE------KDAVLVAVKGAHVEQL 400
Cdd:pfam05557 232 -DLKRKLEREEK----YREEAATLELEKEKLEQELQSWVKLAQDTGLNLrspEDLSRRieqlqqREIVLKEENSSLTSSA 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 401 QELQTRVLELQAHC--------------ETLEAQLRRAEWRQADTAKEKD---AAIDQLREDASTVKSAwdaqiAQLSKE 463
Cdd:pfam05557 307 RQLEKARRELEQELaqylkkiedlnkklKRHKALVRRLQRRVLLLTKERDgyrAILESYDKELTMSNYS-----PQLLER 381
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1034599168 464 MVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSlAVERERSLERDQVQL 516
Cdd:pfam05557 382 IEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQ-TLERELQALRQQESL 433
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
300-513 |
1.26e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 300 LHKELEAL-KEAGAKAAESLQRAEATNAELeRKLQSRAGELQDLeamsRARVKDLEDKLHSVQltrkKEEETFKRKHEEL 378
Cdd:COG4717 51 LEKEADELfKPQGRKPELNLKELKELEEEL-KEAEEKEEEYAEL----QEELEELEEELEELE----AELEELREELEKL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 379 DRLAREKDavLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADtAKEKDAAIDQLREDASTVKSawdaqia 458
Cdd:COG4717 122 EKLLQLLP--LYQELEALEAELAELPERLEELEERLEELRELEEELEELEAE-LAELQEELEELLEQLSLATE------- 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1034599168 459 qlsKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQ 513
Cdd:COG4717 192 ---EELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEE 243
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
99-534 |
1.73e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 99 ALNELLLRKEEEWRALQAHRTQ---LQEAALQDTRSQLEEAQGKLRCLQEDFVynlqvlEERDLELERYDAAFAQAREWE 175
Cdd:pfam12128 287 ELNQLLRTLDDQWKEKRDELNGelsAADAAVAKDRSELEALEDQHGAFLDADI------ETAAADQEQLPSWQSELENLE 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 176 EARRA-EVSELKIEAAKLRQALARE---ARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKWTL---ER 248
Cdd:pfam12128 361 ERLKAlTGKHQDVTAKYNRRRSKIKeqnNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFneeEY 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 249 KLEELDGELALQRQELLLEFESKMRKREHEFRLqaDNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEatnael 328
Cdd:pfam12128 441 RLKSRLGELKLRLNQATATPELLLQLENFDERI--ERAREEQEAANAEVERLQSELRQARKRRDQASEALRQAS------ 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 329 eRKLQSRAGELQDLEAMS-----------RARVKDLEDKLHSV----QLTR-----------KKEEETFKRKHEELDR-- 380
Cdd:pfam12128 513 -RRLEERQSALDELELQLfpqagtllhflRKEAPDWEQSIGKVispeLLHRtdldpevwdgsVGGELNLYGVKLDLKRid 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 381 ----------LAREKDAVLVAVKGAHvEQLQELQTRVLELQAHCETLEAQLRRAewRQADTAKEKDAA--IDQLREDAST 448
Cdd:pfam12128 592 vpewaaseeeLRERLDKAEEALQSAR-EKQAAAEEQLVQANGELEKASREETFA--RTALKNARLDLRrlFDEKQSEKDK 668
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 449 VKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIE 528
Cdd:pfam12128 669 KNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAE 748
|
....*.
gi 1034599168 529 RDQIQK 534
Cdd:pfam12128 749 LKALET 754
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
462-633 |
1.76e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 462 KEMVSRDLQIQTLQEEEVKLKAQVARSQQDIerYKQQLSLAVERERSLER---------------DQVQLGLDWQRRCDD 526
Cdd:pfam17380 305 KEEKAREVERRRKLEEAEKARQAEMDRQAAI--YAEQERMAMERERELERirqeerkrelerirqEEIAMEISRMRELER 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 527 IERDQIQKSEALIQGLSMAKSQvaaKLQETE--QALQEQEVVLKAVTLERDQAVQaLRMHGLPRPGAQMLLRQHEEEISK 604
Cdd:pfam17380 383 LQMERQQKNERVRQELEAARKV---KILEEErqRKIQQQKVEMEQIRAEQEEARQ-REVRRLEEERAREMERVRLEEQER 458
|
170 180
....*....|....*....|....*....
gi 1034599168 605 dfpSSEIQRLREQNTSLRNAIAQMRKEME 633
Cdd:pfam17380 459 ---QQQVERLRQQEEERKRKKLELEKEKR 484
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
229-515 |
1.83e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 41.82 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 229 NGEIDHHREQYENLKWTLERKLEELDgELALQRQELllefeskmRKREHEFRLQADNMsntalsRELKVKLLhKELEALK 308
Cdd:COG1340 14 EEKIEELREEIEELKEKRDELNEELK-ELAEKRDEL--------NAQVKELREEAQEL------REKRDELN-EKVKELK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 309 EAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRaRVKDLEDKLHSVQLTRKKEEETFkrkhEELDRLAREKDAV 388
Cdd:COG1340 78 EERDELNEKLNELREELDELRKELAELNKAGGSIDKLRK-EIERLEWRQQTEVLSPEEEKELV----EKIKELEKELEKA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 389 LVAVKGAhvEQLQELQTRVLELQAHCETLEAQLRRAewrqADTAKEKDAAIDQLREdastvksawdaQIAQLSKEMVSRD 468
Cdd:COG1340 153 KKALEKN--EKLKELRAELKELRKEAEEIHKKIKEL----AEEAQELHEEMIELYK-----------EADELRKEADELH 215
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1034599168 469 LQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQ 515
Cdd:COG1340 216 KEIVEAQEKADELHEEIIELQKELRELRKELKKLRKKQRALKREKEK 262
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
474-636 |
1.88e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 474 LQEEEVKLKAQVARSQQDIERYKQ---------QLSLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSM 544
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQknglvdlseEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 545 AKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRmhglprpgAQM--LLRQHEEEISKDFPS--SEIQRLREQNTS 620
Cdd:COG3206 260 LQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALR--------AQIaaLRAQLQQEAQRILASleAELEALQAREAS 331
|
170
....*....|....*.
gi 1034599168 621 LRNAIAQMRKEMEALS 636
Cdd:COG3206 332 LQAQLAQLEARLAELP 347
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
122-505 |
2.09e-03 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 42.32 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 122 QEAALQDTRSQLEEaqgkLRCLQEDFVynlQVLEERDLELERYDAAFAQAREWEEArraeVSELKIEAAKLRQAL--ARE 199
Cdd:pfam05701 133 HAAAVAELKSVKEE----LESLRKEYA---SLVSERDIAIKRAEEAVSASKEIEKT----VEELTIELIATKESLesAHA 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 200 A-RKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKwTLERKLEELDGELALQRQELLLEFESKMRKREHE 278
Cdd:pfam05701 202 AhLEAEEHRIGAALAREQDKLNWEKELKQAEEELQRLNQQLLSAK-DLKSKLETASALLLDLKAELAAYMESKLKEEADG 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 279 frlqADNMSNTALSRELKVKLLHKELEALKEAGAKA---AESLQRAEAT-NAELERKLQSRAgELQDLEAMSRARVKDLE 354
Cdd:pfam05701 281 ----EGNEKKTSTSIQAALASAKKELEEVKANIEKAkdeVNCLRVAAASlRSELEKEKAELA-SLRQREGMASIAVSSLE 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 355 DKLHSVQ----LTRKKEEETFKRKHE---ELDRLAREKDAVLVAVKGAHvEQLQELQTRVLELQAHCETLEAQLRRAEwR 427
Cdd:pfam05701 356 AELNRTKseiaLVQAKEKEAREKMVElpkQLQQAAQEAEEAKSLAQAAR-EELRKAKEEAEQAKAAASTVESRLEAVL-K 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 428 QADTAKEKD----AAIDQLREDASTV-----------------------KSAWDAQiaQLSKEMVSRDL-QIQTLQEEEV 479
Cdd:pfam05701 434 EIEAAKASEklalAAIKALQESESSAestnqedsprgvtlsleeyyelsKRAHEAE--ELANKRVAEAVsQIEEAKESEL 511
|
410 420
....*....|....*....|....*.
gi 1034599168 480 KLKAQVARSQQDIERYKQQLSLAVER 505
Cdd:pfam05701 512 RSLEKLEEVNREMEERKEALKIALEK 537
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
304-580 |
2.44e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 304 LEALKEAGAKAAESLQRAEAT--NAELERK---------------LQSRAGELQD-LEAMSRARVKDLEDKLHSVQLtrK 365
Cdd:COG3096 363 LEEQEEVVEEAAEQLAEAEARleAAEEEVDslksqladyqqaldvQQTRAIQYQQaVQALEKARALCGLPDLTPENA--E 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 366 KEEETFKRKHEELDRL---AREKDAVLVAVKGAHVEQLQELQTRVLEL---QAHcETLEAQLRRaeWR----QADTAKEK 435
Cdd:COG3096 441 DYLAAFRAKEQQATEEvleLEQKLSVADAARRQFEKAYELVCKIAGEVersQAW-QTARELLRR--YRsqqaLAQRLQQL 517
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 436 DAAIDQLREDASTVKSAwDAQIAQLSKEMvSRDLQIQTLQEEEVklkaqvARSQQDIERYKQQLSLAVERERSLERDQVQ 515
Cdd:COG3096 518 RAQLAELEQRLRQQQNA-ERLLEEFCQRI-GQQLDAAEELEELL------AELEAQLEELEEQAAEAVEQRSELRQQLEQ 589
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034599168 516 LGLDwQRRCDDIERDQIQKSEALIQgLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQA 580
Cdd:COG3096 590 LRAR-IKELAARAPAWLAAQDALER-LREQSGEALADSQEVTAAMQQLLEREREATVERDELAAR 652
|
|
| Rab5-bind |
pfam09311 |
Rabaptin-like protein; Members of this family are predominantly found in Rabaptin and allow ... |
302-582 |
2.50e-03 |
|
Rabaptin-like protein; Members of this family are predominantly found in Rabaptin and allow for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes.
Pssm-ID: 462752 [Multi-domain] Cd Length: 307 Bit Score: 41.49 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 302 KELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEE---ETFKRKHEEL 378
Cdd:pfam09311 9 KQLQAIQEQEAETRDQVKKLQEMLRQANDQLEKTMKDKKELEDKMNQLSEETSNQVSTLAKRNQKSEtllDELQQAFSQA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 379 DRLAREKDAVLVAVKGAHVEQLQELQTRVLELQAHcETLEAQLRRAE-WRQADTAKEKDAAIDQLREDASTVKSAWDAQI 457
Cdd:pfam09311 89 KRNFQDQLAVLMDSREQVSDELVRLQKDNESLQGK-HSLHVSLQQAEkFDMPDTVQELQELVLKYREELIEVRTAADHME 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 458 AQLSKEMVSRDLQIqtlQEEEVKLKAQVARSQQDIERYKQQL----SLAVERERS-LERDQVQLGLDWQRRcddierdQI 532
Cdd:pfam09311 168 EKLKAEILFLKEQI---QAEQCLKENLEETLQAEIENCKEEIasisSLKVELERIkAEKEQLENGLTEKIR-------QL 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1034599168 533 QKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALR 582
Cdd:pfam09311 238 EDLQTTKGSLETQLKKETNEKAAVEQLVFEEKNKAQRLQTELDVSEQVQR 287
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
300-510 |
2.98e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.42 E-value: 2.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 300 LHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQltrkkeeetfkRKHEEld 379
Cdd:pfam07888 46 LLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELS-----------ASSEE-- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 380 rLAREKDAvLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRAEwrqaDTAKEkdaAIDQLREDASTvKSAWDAQIAQ 459
Cdd:pfam07888 113 -LSEEKDA-LLAQRAAHEARIRELEEDIKTLTQRVLERETELERMK----ERAKK---AGAQRKEEEAE-RKQLQAKLQQ 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1034599168 460 LSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLE 510
Cdd:pfam07888 183 TEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENE 233
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
105-515 |
3.03e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 105 LRKEEEWRALQAHRTQLQeAALQDTRSQLEEAQGKLRCLQEDFvyNLQVLEERDLELERYDA----AFAQA--REWEEAR 178
Cdd:PRK04863 275 MRHANERRVHLEEALELR-RELYTSRRQLAAEQYRLVEMAREL--AELNEAESDLEQDYQAAsdhlNLVQTalRQQEKIE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 179 RAEVSELKIEAAKLRQALAR-EARKVEELQQQQQLAFQEHRLELERVHSDKNGEID--HHRE-QYENLKWTLER--KLEE 252
Cdd:PRK04863 352 RYQADLEELEERLEEQNEVVeEADEQQEENEARAEAAEEEVDELKSQLADYQQALDvqQTRAiQYQQAVQALERakQLCG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 253 LDgELALQRQELLLEfeskmrkrehEFRLQADNMSNTALSRELKVKLLhkelEALKEAGAKAAESLQ-------RAEATN 325
Cdd:PRK04863 432 LP-DLTADNAEDWLE----------EFQAKEQEATEELLSLEQKLSVA----QAAHSQFEQAYQLVRkiagevsRSEAWD 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 326 A--ELERKLQSRAGELQDLEAMsRARVKDLEDKLhsvqltrkkeeetfkRKHEELDRLAREKDAVLvavkGAHVEQLQEL 403
Cdd:PRK04863 497 VarELLRRLREQRHLAEQLQQL-RMRLSELEQRL---------------RQQQRAERLLAEFCKRL----GKNLDDEDEL 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 404 QTRVLELQAHCETLEAQLRRAEWRQADTAKEkdaaIDQLredastvksawDAQIAQLSKemvsRDLQIQTLQEEEVKLKA 483
Cdd:PRK04863 557 EQLQEELEARLESLSESVSEARERRMALRQQ----LEQL-----------QARIQRLAA----RAPAWLAAQDALARLRE 617
|
410 420 430
....*....|....*....|....*....|....
gi 1034599168 484 QVARSQQDIERYKQQLSLAVERERSL--ERDQVQ 515
Cdd:PRK04863 618 QSGEEFEDSQDVTEYMQQLLERERELtvERDELA 651
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
320-512 |
3.11e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.42 E-value: 3.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 320 RAEATNAELERKLQSRAGELQDLEAmsrarvkdledklhsVQLTRKKEEETFKRKHEELDRLAREKDavlvavkgahvEQ 399
Cdd:pfam07888 28 RAELLQNRLEECLQERAELLQAQEA---------------ANRQREKEKERYKRDREQWERQRRELE-----------SR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 400 LQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDaQIAQLSKEMVSRDLQIQTLQEEEV 479
Cdd:pfam07888 82 VAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELEE-DIKTLTQRVLERETELERMKERAK 160
|
170 180 190
....*....|....*....|....*....|...
gi 1034599168 480 KLKAQVARSQQDIERYKQQLSLAVERERSLERD 512
Cdd:pfam07888 161 KAGAQRKEEEAERKQLQAKLQQTEEELRSLSKE 193
|
|
| ASY3-like |
pfam20435 |
Meiosis-specific protein ASY3-like; This entry represents a group of plant meiosis-specific ... |
145-303 |
3.13e-03 |
|
Meiosis-specific protein ASY3-like; This entry represents a group of plant meiosis-specific proteins, such as AtASY3 from Arabidopsis and PAIR3 from rice. They are coiled-coil domain proteins required for normal meiosis. PAIR3 is an axial element and part of the synaptonemal complex (SC) that forms between homologous chromosomes during meiosis. Members of this family are homologs of SCYP2 from vertebrates and fungal Red1/Rec10.
Pssm-ID: 466584 [Multi-domain] Cd Length: 793 Bit Score: 41.80 E-value: 3.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 145 EDFVYNLQVLEERDLELERYDAAFAQA--------REWEEARRAEV-----SELKIEAAKLRQALAREARKVE----ELQ 207
Cdd:pfam20435 610 DSFQHCSEMDEDEDEGLGRAVALFAMAlqnferklKSAAEKKSSEIiasvsEEIHLELENIKSHIITEAGKTSnlakTKR 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 208 QQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKWTLERKLEELDGELALQR---QELLLEFESKMRKREHEFRLQAD 284
Cdd:pfam20435 690 KHAETRLQEQEEKMRMIHEKFKDDVSHHLEDFKSTIEELEANQSELKGSIKKQRtshQKLIAHFEGGIETKLDDATKRID 769
|
170
....*....|....*....
gi 1034599168 285 NMSNTALSRELKVKLLHKE 303
Cdd:pfam20435 770 SVNKSARGKMLQLKMIVAE 788
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
152-387 |
3.24e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 3.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 152 QVLEERDLELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQALAREARKVEelqqqqqlAFQEHRLELERVHSDKNGE 231
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR--------ALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 232 IDHHREQYENLKWTLERKLEELDGELALQRQELLLEFESKMRKREHEFRLQADNMSNTALSRELKVKLlhKELEALKEAG 311
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADL--AELAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034599168 312 AKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDA 387
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
398-578 |
3.32e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.54 E-value: 3.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 398 EQLQELQTRVLELQAHCETLEAQ---LRRAEWRQADTAKEKDAAIDQLREDASTVKSAWD---AQIAQLSKEMVSRDLQI 471
Cdd:PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYnknIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEeltDELLNLVMDIEDPSAAL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 472 QTLQEEEVKLKAQVARSQQDIERY---------KQQLSLAVERERSLERDQVQLgldwQRRCDDIE--RDQIQKSEALIQ 540
Cdd:PHA02562 258 NKLNTAAAKIKSKIEQFQKVIKMYekggvcptcTQQISEGPDRITKIKDKLKEL----QHSLEKLDtaIDELEEIMDEFN 333
|
170 180 190
....*....|....*....|....*....|....*...
gi 1034599168 541 GLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAV 578
Cdd:PHA02562 334 EQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ 371
|
|
| CENP-F_leu_zip |
pfam10473 |
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, ... |
313-443 |
5.99e-03 |
|
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance.
Pssm-ID: 463102 [Multi-domain] Cd Length: 140 Bit Score: 38.43 E-value: 5.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 313 KAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEdklhsvqlTRKKEEETFKRKHEELDRLAREKDAVLVAV 392
Cdd:pfam10473 7 HVLEKLKESERKADSLKDKVENLERELEMSEENQELAILEAE--------NSKAEVETLKAEIEEMAQNLRDLELDLVTL 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1034599168 393 KGAHVE---QLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLR 443
Cdd:pfam10473 79 RSEKENltkELQKKQERVSELESLNSSLENLLEEKEQEKVQMKEESKTAVEMLQ 132
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
278-433 |
6.76e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 40.71 E-value: 6.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 278 EFRLQADNmSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAmsrarvkDLEdkl 357
Cdd:PRK11448 133 PFVPPEDP-ENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEA-------QLE--- 201
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034599168 358 hsvQLtRKKEEETfkrkheELDRLAREKDAVLVAVKgahVEQLQELQTRVLelqahcetLEAQLRRAEWrQADTAK 433
Cdd:PRK11448 202 ---QL-QEKAAET------SQERKQKRKEITDQAAK---RLELSEEETRIL--------IDQQLRKAGW-EADSKT 255
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
525-692 |
6.93e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.61 E-value: 6.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 525 DDIERDQIqKSEaLIQGLSMAksQVAAKLQETEQALQEQEVVLKAVTLERDQAvqalrmhglprpgaqmllrQHEEEISK 604
Cdd:COG2433 361 PDVDRDEV-KAR-VIRGLSIE--EALEELIEKELPEEEPEAEREKEHEERELT-------------------EEEEEIRR 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 605 dfPSSEIQRLREQNTSLRNAIAQMRKEMEALShqipppiqtaAESTDANQpdpEAGGDAATPDYVLALEAEIRTLKHKFK 684
Cdd:COG2433 418 --LEEQVERLEAEVEELEAELEEKDERIERLE----------RELSEARS---EERREIRKDREISRLDREIERLERELE 482
|
....*...
gi 1034599168 685 TLEKHLED 692
Cdd:COG2433 483 EERERIEE 490
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
231-445 |
7.29e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 39.90 E-value: 7.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 231 EIDHHREQYENLKWTLERKLEELDGeLALQRQELLLEFESKMRKR---EHEFRLQADNMSNTALSR---ELKVKLLHKEL 304
Cdd:pfam00038 55 EIEDLRRQLDTLTVERARLQLELDN-LRLAAEDFRQKYEDELNLRtsaENDLVGLRKDLDEATLARvdlEAKIESLKEEL 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 305 EALKeagakaaeslqraeaTNAELE-RKLQSRAGELQDLEAMSRARVKDLEDKLHSV--------QLTRKKEEETFKRKH 375
Cdd:pfam00038 134 AFLK---------------KNHEEEvRELQAQVSDTQVNVEMDAARKLDLTSALAEIraqyeeiaAKNREEAEEWYQSKL 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 376 EELDRLAREKDAvlvAVKGAHVE------QLQELQTRVLELQAHCETLEAQLRRAEWRQA-------DTAKEKDAAIDQL 442
Cdd:pfam00038 199 EELQQAAARNGD---ALRSAKEEitelrrTIQSLEIELQSLKKQKASLERQLAETEERYElqladyqELISELEAELQET 275
|
...
gi 1034599168 443 RED 445
Cdd:pfam00038 276 RQE 278
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
169-384 |
7.91e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.15 E-value: 7.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 169 AQAREWEEARRAEVSELKIEAAKLRQALAREARKveelqqqqqlAFQEHRLELERVHSDKNGEIDHHREQYENLKWTLER 248
Cdd:PRK12704 31 AKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKE----------EIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 249 KLEELDgelalQRQELLLEFESKMRKREHEfrlqadnmsntalsrelkVKLLHKELEALKEagaKAAESLQRAEATNAEL 328
Cdd:PRK12704 101 KLELLE-----KREEELEKKEKELEQKQQE------------------LEKKEEELEELIE---EQLQELERISGLTAEE 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1034599168 329 ERKLQsrageLQDLEAMSRARvkdledklhSVQLTRKKEEETfkrkHEELDRLARE 384
Cdd:PRK12704 155 AKEIL-----LEKVEEEARHE---------AAVLIKEIEEEA----KEEADKKAKE 192
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
102-322 |
8.38e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 8.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 102 ELLLRKEEEWRALQAHRTQLQE--AALQDTRSQLEEAQGKLRCLQEDFVYNLQV------LEERDLELERYDAA---FAQ 170
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEErlEALEAELDALQERREALQRLAEYSWDEIDVasaereIAELEAELERLDASsddLAA 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 171 AREWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQ------YENLKW 244
Cdd:COG4913 690 LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAalgdavERELRE 769
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034599168 245 TLERKLEELDGELALQRQELllefESKMRKREHEFRLQADNMSNTALSRELKVKLLHK-ELEALKEAGAKAAESLQRAE 322
Cdd:COG4913 770 NLEERIDALRARLNRAEEEL----ERAMRAFNREWPAETADLDADLESLPEYLALLDRlEEDGLPEYEERFKELLNENS 844
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
97-425 |
9.02e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.32 E-value: 9.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 97 EPALNELLLRKEEEWRALQAHRTQLQEAALQdtRSQLEEAQGKLRCLQEDFVynlqVLEERDLElERYDAAFAQAREWEE 176
Cdd:COG3096 835 EAELAALRQRRSELERELAQHRAQEQQLRQQ--LDQLKEQLQLLNKLLPQAN----LLADETLA-DRLEELREELDAAQE 907
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 177 ARRaevselkiEAAKLRQALAREARKVEElqqqqqlafqehrlelerVHSDKngeidhhrEQYENLKWTLERKLEELDge 256
Cdd:COG3096 908 AQA--------FIQQHGKALAQLEPLVAV------------------LQSDP--------EQFEQLQADYLQAKEQQR-- 951
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 257 lALQRQELLLEFesKMRKREHEFRLQADNM--SNTALSRELKVKLLHKEL------EALKEAGAKAAESLQRAEATNAEL 328
Cdd:COG3096 952 -RLKQQIFALSE--VVQRRPHFSYEDAVGLlgENSDLNEKLRARLEQAEEarrearEQLRQAQAQYSQYNQVLASLKSSR 1028
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 329 ERK---LQSRAGELQDL--------EAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLARE--KDAVLVAVKGA 395
Cdd:COG3096 1029 DAKqqtLQELEQELEELgvqadaeaEERARIRRDELHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRlrKAERDYKQERE 1108
|
330 340 350
....*....|....*....|....*....|
gi 1034599168 396 HVEQLQELQTRVLELQAHcETLEAQLRRAE 425
Cdd:COG3096 1109 QVVQAKAGWCAVLRLARD-NDVERRLHRRE 1137
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
319-635 |
9.97e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 9.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 319 QRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVlvavkgaHVE 398
Cdd:pfam17380 303 QEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEIAM-------EIS 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 399 QLQELQTRVLELQAHCETLEAQLRRAEwRQADTAKEKDAAIDQLREDASTVKSawdaqiaqlsKEMVSRDLQIQTLQEEE 478
Cdd:pfam17380 376 RMRELERLQMERQQKNERVRQELEAAR-KVKILEEERQRKIQQQKVEMEQIRA----------EQEEARQREVRRLEEER 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 479 VKLKAQVarSQQDIERYKQqlslaVERERSLERDQvqlgldwQRRCDDIERDQIQKSEALIQglsmAKSQVAAKLQETEQ 558
Cdd:pfam17380 445 AREMERV--RLEEQERQQQ-----VERLRQQEEER-------KRKKLELEKEKRDRKRAEEQ----RRKILEKELEERKQ 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034599168 559 ALQEQEVVLKAVTLERDQAVQALrmhglprpGAQMLLRQHEEEISKDFPSSEIQRLREQ---NTSLRNAIAQMRKEMEAL 635
Cdd:pfam17380 507 AMIEEERKRKLLEKEMEERQKAI--------YEEERRREAEEERRKQQEMEERRRIQEQmrkATEERSRLEAMEREREMM 578
|
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