|
Name |
Accession |
Description |
Interval |
E-value |
| TBC |
smart00164 |
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and ... |
143-351 |
1.72e-82 |
|
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Pssm-ID: 214540 [Multi-domain] Cd Length: 216 Bit Score: 264.17 E-value: 1.72e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 143 VHKGIPHHFRAIVWQLLCSAQSMPI---KDQYSELLKMTSPCEKL----IRRDIARTYPEHNFFKEKDSLGQEVLFNVMK 215
Cdd:smart00164 1 VRKGVPPSLRGVVWKLLLNAQPMDTsadKDLYSRLLKETAPDDKSivhqIEKDLRRTFPEHSFFQDKEGPGQESLRRVLK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 216 AYSLVDREVGYCQGSAFIVGLLLMQMP-EEEAFCVFVKLMQDYRLReLFKPSMAELGLCMYQFECMIQEHLPELFVHFQS 294
Cdd:smart00164 81 AYALYNPEVGYCQGMNFLAAPLLLVMEdEEDAFWCLVKLMERYGPN-FYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKD 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1034561680 295 QSFHTSMYASSWFLTIFLTTFPLPIATRIFDIFMSEGLEIVFRVGLALLQMNQAELM 351
Cdd:smart00164 160 LGITPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGSDFLFRVALALLKLHRDVLL 216
|
|
| RabGAP-TBC |
pfam00566 |
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are ... |
183-351 |
3.84e-55 |
|
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases.
Pssm-ID: 459855 Cd Length: 178 Bit Score: 188.23 E-value: 3.84e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 183 KLIRRDIARTYPEHNFFKEKDslGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQ-MPEEEAFCVFVKLMQDYRLRE 261
Cdd:pfam00566 10 EQIEKDVPRTFPHSFFFDNGP--GQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVyLDEEDAFWCFVSLLENYLLRD 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 262 LFKPSMAELGLCMYQFECMIQEHLPELFVHFQSQSFHTSMYASSWFLTIFLTTFPLPIATRIFDIFMSEGLEIV-FRVGL 340
Cdd:pfam00566 88 FYTPDFPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFASQWFLTLFAREFPLSTVLRIWDYFFLEGEKFVlFRVAL 167
|
170
....*....|.
gi 1034561680 341 ALLQMNQAELM 351
Cdd:pfam00566 168 AILKRFREELL 178
|
|
| COG5210 |
COG5210 |
GTPase-activating protein [General function prediction only]; |
118-360 |
1.16e-43 |
|
GTPase-activating protein [General function prediction only];
Pssm-ID: 227535 [Multi-domain] Cd Length: 496 Bit Score: 165.75 E-value: 1.16e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 118 WVLYHHSQLCRFQVHYLKRSH-TEELVHKGIPHHFRAIVWQLLcsAQSMPIKDQ----YSELLKM-------TSPCEKLI 185
Cdd:COG5210 183 DKLWISYLDPNPLSFLPVQLSkLRELIRKGIPNELRGDVWEFL--LGIGFDLDKnpglYERLLNLhreakipTQEIISQI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 186 RRDIARTYPEHNFFKEKDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMPEEE-AFCVFVKLMQDYRLRELFK 264
Cdd:COG5210 261 EKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEqAFWCLVKLLKNYGLPGYFL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 265 PSMAELGLCMYQFECMIQEHLPELFVHFQSQSFHTSMYASSWFLTIFLTTFPLPIATRIFDIFMSEGLEIVFRVGLALLQ 344
Cdd:COG5210 341 KNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILK 420
|
250
....*....|....*.
gi 1034561680 345 MNQAELMQLDMEGMLQ 360
Cdd:COG5210 421 LLRDKLLKLDSDELLD 436
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
389-708 |
8.29e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.74 E-value: 8.29e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 389 KKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELATIKQQS 468
Cdd:COG1196 260 AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 469 DEASAKLEQAENTIRKLQHQQQwhkcssnynedfvlQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSLpdENNIA 548
Cdd:COG1196 340 EELEEELEEAEEELEEAEAELA--------------EAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL--AAQLE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 549 RLQEELIAVKLREAEAIMGLKELRQQVKDLEEhwqrhlarttgrwkdppkknAMNELQDELMTIRLREAETQAEIREIKQ 628
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAELEE--------------------EEEEEEEALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 629 RMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMAVRLREADSIAAVAELR 708
Cdd:COG1196 464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAA 543
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
407-720 |
6.54e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.70 E-value: 6.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 407 EEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQvtraqeaEENYLIKRELATIKQQSDEASAKLEQAENTIRKLQ 486
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELE-------EELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 487 HQQQWHKCSSNYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSLpdENNIARLQEELIAVKLREAEAIM 566
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL--REALDELRAELTLLNEEAANLRE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 567 GLKELRQQVKDleehWQRHLARTTGRWKDppKKNAMNELQDELMTIRLREAETQAEIREIKQRMMEMETQNQINSNHLRR 646
Cdd:TIGR02168 825 RLESLERRIAA----TERRLEDLEEQIEE--LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEE 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 647 AEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECK---NKEEVMAVRLREADSIAA--------VAELRQHIAELE 715
Cdd:TIGR02168 899 LSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRidnLQERLSEEYSLTLEEAEAlenkieddEEEARRRLKRLE 978
|
....*
gi 1034561680 716 IQKEE 720
Cdd:TIGR02168 979 NKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
385-757 |
1.83e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.96 E-value: 1.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 385 KYNSKK---MKKLEKeyttikTKEMEEQVEIkrLRTEnrlLKQRIETLEKEsaslADRLIQGQVTRAQEAE-ENYLIKRE 460
Cdd:COG1196 169 KYKERKeeaERKLEA------TEENLERLED--ILGE---LERQLEPLERQ----AEKAERYRELKEELKElEAELLLLK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 461 LATIKQQSDEASAKLEQAENTIRKLQHQQQwhkcssnynedfvlQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNS 540
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELA--------------ELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 541 LpdENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEhwqrhlarttgrwkdppkknAMNELQDELMTIRLREAETQ 620
Cdd:COG1196 300 L--EQDIARLEERRRELEERLEELEEELAELEEELEELEE--------------------ELEELEEELEEAEEELEEAE 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 621 AEIREIKQRmmemetqnqinsnhLRRAEQEVISLQEKvqyLSAQNKGLLTQLSEAKRKQAEIEckNKEEVMAVRLREADS 700
Cdd:COG1196 358 AELAEAEEA--------------LLEAEAELAEAEEE---LEELAEELLEALRAAAELAAQLE--ELEEAEEALLERLER 418
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1034561680 701 I-AAVAELRQHIAELEIQKEEGKLQGQLNKSDSNQYIGELKDQIAELNHEGELGREGR 757
Cdd:COG1196 419 LeEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
435-676 |
4.70e-10 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 63.50 E-value: 4.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 435 SLADRLIQGQVTRAQEAEENYL--IKRELATIKQQSDEASAKLE--QAENTIRKLQHQQQwhkcssnYNEDFVLQLEKEL 510
Cdd:COG3206 156 ALAEAYLEQNLELRREEARKALefLEEQLPELRKELEEAEAALEefRQKNGLVDLSEEAK-------LLLQQLSELESQL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 511 VQARLSEAESQCALKEMQDKVLDIEKRNNSLPDENNIARLQEELIAVKLREAEAIMGL-------KELRQQVKDLEEHWQ 583
Cdd:COG3206 229 AEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYtpnhpdvIALRAQIAALRAQLQ 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 584 RHLARttgrwkdppkknAMNELQDELMTIRLREAETQAEIREIKQRMMEmetqnqinsnhLRRAEQEVISLQEKVQYLSA 663
Cdd:COG3206 309 QEAQR------------ILASLEAELEALQAREASLQAQLAQLEARLAE-----------LPELEAELRRLEREVEVARE 365
|
250
....*....|...
gi 1034561680 664 QNKGLLTQLSEAK 676
Cdd:COG3206 366 LYESLLQRLEEAR 378
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
389-745 |
7.21e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 7.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 389 KKMKKLEKEY-TTIKTKEMEEQVEIKRLRtenrLLKQRIETLEKESASLadrliQGQVTRAQEAEENylIKRELATIKQQ 467
Cdd:TIGR02168 200 RQLKSLERQAeKAERYKELKAELRELELA----LLVLRLEELREELEEL-----QEELKEAEEELEE--LTAELQELEEK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 468 SDEASAKLEQAENTIRKLQHQQQwhkcssnynedfvlqlekeLVQARLSEAESQcalKEMQDkvldiEKRNNSlpdENNI 547
Cdd:TIGR02168 269 LEELRLEVSELEEEIEELQKELY-------------------ALANEISRLEQQ---KQILR-----ERLANL---ERQL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 548 ARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRhlarttgrwkdppKKNAMNELQDELMTIRLREAETQAEIREIK 627
Cdd:TIGR02168 319 EELEAQLEELESKLDELAEELAELEEKLEELKEELES-------------LEAELEELEAELEELESRLEELEEQLETLR 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 628 QRMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMA-VRLREADSIAAVAE 706
Cdd:TIGR02168 386 SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEeLQEELERLEEALEE 465
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1034561680 707 LRQHIAELE--IQKEEGKLQGQLNKSDSNQYIGELKDQIAE 745
Cdd:TIGR02168 466 LREELEEAEqaLDAAERELAQLQARLDSLERLQENLEGFSE 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
535-749 |
1.64e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 1.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 535 EKRNNSLPDENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEhwQRHLARTTGRWKDPPKKNAMNELQDELMTIRL 614
Cdd:TIGR02168 667 KTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEE--ELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 615 RE---AETQAEIREIKQRMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIecknKEEVM 691
Cdd:TIGR02168 745 LEeriAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL----NEEAA 820
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1034561680 692 AVRLREADSIAAVAELRQHIAELEIQKEEGKLQGQLNksdsNQYIGELKDQIAELNHE 749
Cdd:TIGR02168 821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIESL----AAEIEELEELIEELESE 874
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
383-747 |
4.23e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.97 E-value: 4.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 383 QVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELA 462
Cdd:PRK02224 343 EAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERD 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 463 TIKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNEdfvlqLEKELVQARLSEAESQCA-----LKEMQDKVLDIEKR 537
Cdd:PRK02224 423 ELREREAELEATLRTARERVEEAEALLEAGKCPECGQP-----VEGSPHVETIEEDRERVEeleaeLEDLEEEVEEVEER 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 538 NNSLPD----ENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGrwkdppKKNAMNELQDELMTIR 613
Cdd:PRK02224 498 LERAEDlveaEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEE------KREAAAEAEEEAEEAR 571
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 614 LREAETQAEIREIKQRMMEMETQNQINSNhLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEevmav 693
Cdd:PRK02224 572 EEVAELNSKLAELKERIESLERIRTLLAA-IADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDE----- 645
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1034561680 694 rlreadsiAAVAELRQHIAELE--IQKEEGKLQGQLNKSDSNQ-YIGELKDQIAELN 747
Cdd:PRK02224 646 --------ARIEEAREDKERAEeyLEQVEEKLDELREERDDLQaEIGAVENELEELE 694
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
388-690 |
9.44e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 9.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 388 SKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELATIKQQ 467
Cdd:TIGR02169 680 RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 468 SDEASAKLEQAENTIRKLQHQqqwhkcssnynedfVLQLEKELVQARLSEAESQcaLKEMQDKVLDIEKRNNSLPDENNi 547
Cdd:TIGR02169 760 LKELEARIEELEEDLHKLEEA--------------LNDLEARLSHSRIPEIQAE--LSKLEEEVSRIEARLREIEQKLN- 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 548 ARLQEELIAVKLREaeaimglkELRQQVKDLEEhwqrhlarttgrwkdppkKNAMNELQDELMTIRLRE-----AETQAE 622
Cdd:TIGR02169 823 RLTLEKEYLEKEIQ--------ELQEQRIDLKE------------------QIKSIEKEIENLNGKKEEleeelEELEAA 876
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1034561680 623 IREIKQRMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEV 690
Cdd:TIGR02169 877 LRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
389-707 |
1.01e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 1.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 389 KKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADrliqgqvtraqeaeenylikrELATIKQQS 468
Cdd:TIGR02168 274 LEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEA---------------------QLEELESKL 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 469 DEASAKLEQAENTIrklqhqqqwhkcssnynedFVLQLEKELVQARLSEAESQcaLKEMQDKVLDIEKRNNSLPDENNIA 548
Cdd:TIGR02168 333 DELAEELAELEEKL-------------------EELKEELESLEAELEELEAE--LEELESRLEELEEQLETLRSKVAQL 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 549 RLQEELIAVKLREAEAimglkelrqQVKDLEEHWQRHLARTTGRWKDpPKKNAMNELQDELMTIRLREAETQAEIREIKQ 628
Cdd:TIGR02168 392 ELQIASLNNEIERLEA---------RLERLEDRRERLQQEIEELLKK-LEEAELKELQAELEELEEELEELQEELERLEE 461
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034561680 629 RMMEMETQnqinsnhLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIecknkEEVMAVRLREADSIAAVAEL 707
Cdd:TIGR02168 462 ALEELREE-------LEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV-----KALLKNQSGLSGILGVLSEL 528
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
376-751 |
1.43e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 1.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 376 KLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASL--ADRLIQG--QVTRAQEA 451
Cdd:PTZ00121 1357 DEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKkkADEAKKKaeEKKKADEA 1436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 452 EENYLIKRELATIKQQSDEAsaklEQAENTIRKLQHQQQWHkcssnynedfvlQLEKELVQARLSEaESQCALKEMQDKV 531
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAEEA----KKAEEAKKKAEEAKKAD------------EAKKKAEEAKKAD-EAKKKAEEAKKKA 1499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 532 LDIEKRNNSLPDENNIARLQEELIAVKLREAEAIMGLKELR--QQVKDLEEHWQRHLARTTGRWKDPPKKNAMNElqDEL 609
Cdd:PTZ00121 1500 DEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKkaEEKKKADELKKAEELKKAEEKKKAEEAKKAEE--DKN 1577
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 610 MTIRLREAETQAEIREIKQRMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEE 689
Cdd:PTZ00121 1578 MALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEE 1657
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034561680 690 VMAVRlreADSIAAVAELRQHIAElEIQKEE----GKLQGQLNKSDSNQYIGELKDQIAELNHEGE 751
Cdd:PTZ00121 1658 ENKIK---AAEEAKKAEEDKKKAE-EAKKAEedekKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
393-724 |
2.83e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.30 E-value: 2.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 393 KLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQ--EAEENYLIKR---ELATIKQQ 467
Cdd:PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGREltEEHRKELLEEytaELKRIEKE 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 468 SDEASAKLEQAENTIRKLQHQQQWHKCSSNYNE--DFVLQLEKELVQARLSEAESQCA-LKEMQDKVLDIEKRNNSLPDE 544
Cdd:PRK03918 468 LKEIEEKERKLRKELRELEKVLKKESELIKLKElaEQLKELEEKLKKYNLEELEKKAEeYEKLKEKLIKLKGEIKSLKKE 547
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 545 -NNIARLQEELIAV--KLREAEAIMG-------------LKELRQQVKDLEEHWQRHLARTTGRWKDPPKKNAMNELQDE 608
Cdd:PRK03918 548 lEKLEELKKKLAELekKLDELEEELAellkeleelgfesVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEE 627
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 609 LMTIRLREAETQAEIREIKQRMMEMEtqNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIEcKNKE 688
Cdd:PRK03918 628 LDKAFEELAETEKRLEELRKELEELE--KKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLK-EELE 704
|
330 340 350
....*....|....*....|....*....|....*....
gi 1034561680 689 EVMAVRLREAD---SIAAVAELRQHIAELEIQKEEGKLQ 724
Cdd:PRK03918 705 EREKAKKELEKlekALERVEELREKVKKYKALLKERALS 743
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
344-718 |
6.18e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.58 E-value: 6.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 344 QMNQAELMQLDMEGMLQHFQKVIphqfdgvpdkliqaayqVKYNSKKMKKLEKE--YTTIKTKEMEEQVE--IKRLRTEN 419
Cdd:pfam15921 171 QIEQLRKMMLSHEGVLQEIRSIL-----------------VDFEEASGKKIYEHdsMSTMHFRSLGSAISkiLRELDTEI 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 420 RLLKQRI-------ETLEKESASLADRLIQGQVTRAQEaeenyLIKRELATIKQQSDEASAKLEQAeNTIRKlqhqqqwh 492
Cdd:pfam15921 234 SYLKGRIfpvedqlEALKSESQNKIELLLQQHQDRIEQ-----LISEHEVEITGLTEKASSARSQA-NSIQS-------- 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 493 kcssnynedfvlQLEKELVQARLSEAESQCALKEMQDKV--LDIEKRNNSLPDENNIARLQEELIAVKLREAEAIMGLKE 570
Cdd:pfam15921 300 ------------QLEIIQEQARNQNSMYMRQLSDLESTVsqLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQ 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 571 LRQQVKDLEEHWQRHLArttgrwkdppkknamnelqdelmTIRLREAETQAEiREIKQRMMEMETQNQINSNHLRRaeqE 650
Cdd:pfam15921 368 FSQESGNLDDQLQKLLA-----------------------DLHKREKELSLE-KEQNKRLWDRDTGNSITIDHLRR---E 420
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034561680 651 VISLQEKVQYLSAQNKGLLTQLS-EAKRKQAEIECKNKEevmavrLREADSIAAVAE-----LRQHIAELEIQK 718
Cdd:pfam15921 421 LDDRNMEVQRLEALLKAMKSECQgQMERQMAAIQGKNES------LEKVSSLTAQLEstkemLRKVVEELTAKK 488
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
389-749 |
1.02e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 389 KKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKEsASLADRLIQGQVTRAQEAEENYLIKRELATIKQQS 468
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKL-LQLLPLYQELEALEAELAELPERLEELEERLEELR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 469 dEASAKLEQAENTIRKLQHQ-QQWHKCSSNYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSLPDENNI 547
Cdd:COG4717 160 -ELEEELEELEAELAELQEElEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEA 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 548 ARLQEEL--IAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTG-----RWKDPPKKNAMNELQDELMTIRLREAETQ 620
Cdd:COG4717 239 AALEERLkeARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGllallFLLLAREKASLGKEAEELQALPALEELEE 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 621 AEIREIKQR-MMEMETQNQINSNHLRRAEQevisLQEKVQYLSAQNKGLLTQLSEAKRKQ--AEIECKNKEEVMAVRLRE 697
Cdd:COG4717 319 EELEELLAAlGLPPDLSPEELLELLDRIEE----LQELLREAEELEEELQLEELEQEIAAllAEAGVEDEEELRAALEQA 394
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1034561680 698 ADSIAAVAELRQHIAELE-IQKEEGKLQGQLNKSDSNQYIGELKDQIAELNHE 749
Cdd:COG4717 395 EEYQELKEELEELEEQLEeLLGELEELLEALDEEELEEELEELEEELEELEEE 447
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
407-629 |
1.04e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 1.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 407 EEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEaeenylikrELATIKQQSDEASAKLEQAENTIRKLQ 486
Cdd:COG4913 259 ELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRA---------ELARLEAELERLEARLDALREELDELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 487 HQQQwhkcSSNYNEdfVLQLEKELVQARLSEAESqcalkemqdkvldiekrnnslpdENNIARLQEELIAVKLREAEAIM 566
Cdd:COG4913 330 AQIR----GNGGDR--LEQLEREIERLERELEER-----------------------ERRRARLEALLAALGLPLPASAE 380
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034561680 567 GLKELRQQVKDLEEHWQRHLARTTgrwkdppkkNAMNELQDELMTIRLREAETQAEIREIKQR 629
Cdd:COG4913 381 EFAALRAEAAALLEALEEELEALE---------EALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
458-751 |
2.22e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 2.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 458 KRELATIKQQSDEASAKLEQAENTIRKLQHQQqwhkcssnynedfvLQLEK-ELVQARLSEAESQCALKEMQDKVLDIEK 536
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIDEKRQQLERLRRER--------------EKAERyQALLKEKREYEGYELLKEKEALERQKEA 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 537 RNNSLPD-ENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEhwqrhlarttgrwkdppkkNAMNELQDELMTIRLR 615
Cdd:TIGR02169 242 IERQLASlEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE-------------------EEQLRVKEKIGELEAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 616 EAETQAEIREIKQRMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMAVRL 695
Cdd:TIGR02169 303 IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAE 382
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034561680 696 READSIAAVAELRQHIAEL-EIQKEEGKLQGQLNK-----SDSNQYIGELKDQIAELNHEGE 751
Cdd:TIGR02169 383 TRDELKDYREKLEKLKREInELKRELDRLQEELQRlseelADLNAAIAGIEAKINELEEEKE 444
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
379-564 |
3.15e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 3.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 379 QAAYQVKYNSKK--MKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYL 456
Cdd:TIGR02169 324 LAKLEAEIDKLLaeIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 457 IKRELATIKQQSDEASAKLEQAENTIRKLQHQQqwhkcssnyNEdfvLQLEKELVQARLSEAESQcaLKEMQDKVLDIEK 536
Cdd:TIGR02169 404 LKRELDRLQEELQRLSEELADLNAAIAGIEAKI---------NE---LEEEKEDKALEIKKQEWK--LEQLAADLSKYEQ 469
|
170 180 190
....*....|....*....|....*....|
gi 1034561680 537 RNNSLpdENNIARLQEELIAV--KLREAEA 564
Cdd:TIGR02169 470 ELYDL--KEEYDRVEKELSKLqrELAEAEA 497
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
365-755 |
4.11e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 50.51 E-value: 4.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 365 VIPHQFDGVPDKLiqAAYQVKYNSKKMKKLEKEYTTIkTKEMEEQVEIKRLrTENRLLKQRIEtlekesasladrLIQGQ 444
Cdd:pfam17380 218 VAPKEVQGMPHTL--APYEKMERRKESFNLAEDVTTM-TPEYTVRYNGQTM-TENEFLNQLLH------------IVQHQ 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 445 VTRAQEAEENYLIKRELATIKQQSDEASAKLEQAentiRKLQH-----QQQWHKCSSNYNEDFVLQLEKELVQARLSEAE 519
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEKAREVERR----RKLEEaekarQAEMDRQAAIYAEQERMAMERERELERIRQEE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 520 SQCALKEMQDKVLDIEkrnnsLPDENNIARLQEEliavKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGRWKDPPKK 599
Cdd:pfam17380 358 RKRELERIRQEEIAME-----ISRMRELERLQME----RQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 600 namnelQDELMTIRLREAETQAEIREIKQRMMEMETQNQI-----NSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSE 674
Cdd:pfam17380 429 ------QEEARQREVRRLEEERAREMERVRLEEQERQQQVerlrqQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELE 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 675 AkRKQAEIECKNKEEVMAVRLREADSiAAVAELRQHIAELEIQK-----EEGKLQGQLNKSDsnqyigELKDQIAELNHE 749
Cdd:pfam17380 503 E-RKQAMIEEERKRKLLEKEMEERQK-AIYEEERRREAEEERRKqqemeERRRIQEQMRKAT------EERSRLEAMERE 574
|
....*.
gi 1034561680 750 GELGRE 755
Cdd:pfam17380 575 REMMRQ 580
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
546-761 |
6.20e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 6.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 546 NIARLQEELIavKLREAEAIMglKELRQQVKDLE---EHWQRHLArttgrwkdppKKNAMNELQDELMTIRLREAET--- 619
Cdd:COG4913 226 AADALVEHFD--DLERAHEAL--EDAREQIELLEpirELAERYAA----------ARERLAELEYLRAALRLWFAQRrle 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 620 --QAEIREIKQRMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEiECKNKEEVMAVRLRE 697
Cdd:COG4913 292 llEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELE-ERERRRARLEALLAA 370
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034561680 698 -----ADSIAAVAELRQHIAEL--EIQKEEGKLQGQLNKSDSNQYigELKDQIAELNHEGELGREGRNVIP 761
Cdd:COG4913 371 lglplPASAEEFAALRAEAAALleALEEELEALEEALAEAEAALR--DLRRELRELEAEIASLERRKSNIP 439
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
423-629 |
6.30e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 6.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 423 KQRIETLEKESASLADRL--IQGQVTRAQEAEENYLIKRELATIKQQSDEASAKLEQAENTIRKLQHQQQwhKCSSNYNE 500
Cdd:COG4913 609 RAKLAALEAELAELEEELaeAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELE--RLDASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 501 dfVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKRnnslpdennIARLQEELIAVKLREAEAIMGLKElrQQVKDLEE 580
Cdd:COG4913 687 --LAALEEQLEELEAELEELEEELDELKGEIGRLEKE---------LEQAEEELDELQDRLEAAEDLARL--ELRALLEE 753
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1034561680 581 HWQRHLARTTGRwkdppkkNAMNELQDELMTIRLREAETQAEIREIKQR 629
Cdd:COG4913 754 RFAAALGDAVER-------ELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
342-739 |
8.24e-06 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 49.51 E-value: 8.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 342 LLQMNQAELMQLDMEGMLQHFQKVIphqfdgvpdKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEikRLRTENRL 421
Cdd:pfam07888 23 LLVVPRAELLQNRLEECLQERAELL---------QAQEAANRQREKEKERYKRDREQWERQRRELESRVA--ELKEELRQ 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 422 LKQRIETLE---KESASLADRLIQGQVTRAQEAEENYLIKREL----ATIKQQSDEASAKLEQAENTIRKLQHQQQwhkc 494
Cdd:pfam07888 92 SREKHEELEekyKELSASSEELSEEKDALLAQRAAHEARIRELeediKTLTQRVLERETELERMKERAKKAGAQRK---- 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 495 ssnynEDfvlQLEKELVQARL--SEAESQCALKEMQD-KVLDIEKRNNSLPDENNIARLQEELIAVKLREAEAIMGLKEL 571
Cdd:pfam07888 168 -----EE---EAERKQLQAKLqqTEEELRSLSKEFQElRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEEL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 572 R--QQVKDLEEHWQRHLAR---TTGRWKDppkknamnELQDELMTIRLREAETQAEIREIKQRMMEMETQ-NQINSNHLR 645
Cdd:pfam07888 240 RslQERLNASERKVEGLGEelsSMAAQRD--------RTQAELHQARLQAAQLTLQLADASLALREGRARwAQERETLQQ 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 646 RAEQEvislQEKVQYLSAQNKGLLTQLSEAK--RKQAEIECKNKEEVMAVRLREADSiaavaELRQHIAELEI-QKEegK 722
Cdd:pfam07888 312 SAEAD----KDRIEKLSAELQRLEERLQEERmeREKLEVELGREKDCNRVQLSESRR-----ELQELKASLRVaQKE--K 380
|
410
....*....|....*..
gi 1034561680 723 LQGQLNKSDSNQYIGEL 739
Cdd:pfam07888 381 EQLQAEKQELLEYIRQL 397
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
549-754 |
9.19e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 9.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 549 RLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHlarttgRWKDPPKKNAMNELQDELMTIRLREAETQAEIREIKQ 628
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEEL------RLEVSELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 629 RMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIEckNKEEVMAVRLREADsiAAVAELR 708
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE--AELEELESRLEELE--EQLETLR 385
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1034561680 709 QHIAELEiqKEEGKLQGQLN-----KSDSNQYIGELKDQIAELNHEGELGR 754
Cdd:TIGR02168 386 SKVAQLE--LQIASLNNEIErlearLERLEDRRERLQQEIEELLKKLEEAE 434
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
404-757 |
9.76e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 9.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 404 KEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQE------AEENYLIKRELATIKQQSDEASAKLEQ 477
Cdd:pfam02463 177 KLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEeyllylDYLKLNEERIDLLQELLRDEQEEIESS 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 478 AENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSLPDENN----------- 546
Cdd:pfam02463 257 KQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKaekelkkekee 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 547 IARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGRWKDPPKKNAMNELQDELMTIRLREAETQAEIREi 626
Cdd:pfam02463 337 IEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELAR- 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 627 KQRMMEMETQNQInsnhlrraEQEVISLQEKVQYLSAQnkglLTQLSEAKRKQAEIECKNKEEVMAVRlREADSIAAVAE 706
Cdd:pfam02463 416 QLEDLLKEEKKEE--------LEILEEEEESIELKQGK----LTEEKEELEKQELKLLKDELELKKSE-DLLKETQLVKL 482
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1034561680 707 LRQHIAELEIQKEEGKLQGQLNKSDSNQYIGELKDQIAELNHEGELGREGR 757
Cdd:pfam02463 483 QEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGD 533
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
407-757 |
1.23e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.27 E-value: 1.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 407 EEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELA-------TIKQQSDEASAKLEQAE 479
Cdd:PRK02224 248 ERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGlddadaeAVEARREELEDRDEELR 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 480 NTIRKLQHQQQWHKCSSNYNEDFVLQLE--------------KELVQARLSEAESQCALKEMQDKVLDIEKRNNSLPD-- 543
Cdd:PRK02224 328 DRLEECRVAAQAHNEEAESLREDADDLEeraeelreeaaeleSELEEAREAVEDRREEIEELEEEIEELRERFGDAPVdl 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 544 ---ENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGR-WKDPPKKNAMNELQDELMTIRLREAET 619
Cdd:PRK02224 408 gnaEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQpVEGSPHVETIEEDRERVEELEAELEDL 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 620 QAEIREIKQRMMEMETqnqinsnhLRRAEQEVISLQEK----VQYLSAQNKGLltqlsEAKRKQAEIECKNKEEVMAvRL 695
Cdd:PRK02224 488 EEEVEEVEERLERAED--------LVEAEDRIERLEERredlEELIAERRETI-----EEKRERAEELRERAAELEA-EA 553
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034561680 696 READSIAAVAELRQHIAELEIQKEEGKLQGQLNKSDSNQYIGELKDQIAELNHEGELGREGR 757
Cdd:PRK02224 554 EEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKR 615
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
471-732 |
1.62e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 1.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 471 ASAKLEQAENTIRKLQHQQQwhkcssnynedfvlQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSLpdENNIARL 550
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIA--------------ELEKELAALKKEEKALLKQLAALERRIAALARRIRAL--EQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 551 QEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRhlarttgrwkdppkknamNELQDELMTIRLREAETQAEIREIKQRM 630
Cdd:COG4942 82 EAELAELEKEIAELRAELEAQKEELAELLRALYR------------------LGRQPPLALLLSPEDFLDAVRRLQYLKY 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 631 MEMETQNQINSnhLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMAVRLREADSIAAVAELRQH 710
Cdd:COG4942 144 LAPARREQAEE--LRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
250 260
....*....|....*....|....
gi 1034561680 711 IAELE--IQKEEGKLQGQLNKSDS 732
Cdd:COG4942 222 AEELEalIARLEAEAAAAAERTPA 245
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
418-729 |
1.82e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.80 E-value: 1.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 418 ENRL--LKQRIETLEKESASLA-------------DRLIQGQVTRAQEAEENylikRELATIKQQSDEASAKLEQAENTI 482
Cdd:PRK04863 785 EKRIeqLRAEREELAERYATLSfdvqklqrlhqafSRFIGSHLAVAFEADPE----AELRQLNRRRVELERALADHESQE 860
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 483 RklQHQQQWHK----CSS-NYNEDFVLQLEKELVQARLSEAESQcaLKEMQDKVLDIEKRNNSLPD-ENNIARLQ---EE 553
Cdd:PRK04863 861 Q--QQRSQLEQakegLSAlNRLLPRLNLLADETLADRVEEIREQ--LDEAEEAKRFVQQHGNALAQlEPIVSVLQsdpEQ 936
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 554 LIAVKLREAEAIMGLKELRQQVKDLEEHWQR--HLArttgrWKDPPKK-NAMNELQDELMTiRLREAETQAeiREIKQRM 630
Cdd:PRK04863 937 FEQLKQDYQQAQQTQRDAKQQAFALTEVVQRraHFS-----YEDAAEMlAKNSDLNEKLRQ-RLEQAEQER--TRAREQL 1008
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 631 MEMETQnqinsnhLRRAEQEVISLQEkvqylSAQNKglLTQLSEAKRKQAEI---ECKNKEEVMAVRLREADSIAAVAEL 707
Cdd:PRK04863 1009 RQAQAQ-------LAQYNQVLASLKS-----SYDAK--RQMLQELKQELQDLgvpADSGAEERARARRDELHARLSANRS 1074
|
330 340
....*....|....*....|..
gi 1034561680 708 RQHIAELEIQKEEGKLQGQLNK 729
Cdd:PRK04863 1075 RRNQLEKQLTFCEAEMDNLTKK 1096
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
392-746 |
2.03e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.39 E-value: 2.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 392 KKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEEnyLIKRELATIKQQSDEA 471
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA--LEEAAEEEAELEEEEE 459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 472 SAKLEQAENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEK--------------- 536
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGavavligveaayeaa 539
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 537 ---------RNNSLPDENNIARLQEELIAVKLREAE-----AIMGLKELRQQVKDLEEHWQRHLARTTGRWKDPPKKNAM 602
Cdd:COG1196 540 leaalaaalQNIVVEDDEVAAAAIEYLKAAKAGRATflpldKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG 619
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 603 NELQDELM-------------TIRLREAETQAEIREIKQRMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLL 669
Cdd:COG1196 620 DTLLGRTLvaarleaalrravTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL 699
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 670 TQLSEAKRKQAEIE---CKNKEEVMAVRLREADSIAAVAELRQHIAELEIQKEEGKLQGQLNKSDSNQYIGELKDQIAEL 746
Cdd:COG1196 700 LAEEEEERELAEAEeerLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
404-710 |
2.32e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 48.28 E-value: 2.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 404 KEMEEQV---EIKRLRTENRLLKQRIETLEKE----SASLADRLIQGQVTRAQEAEENYLIKRELATIKQQSDEASAkle 476
Cdd:pfam10174 459 REREDRErleELESLKKENKDLKEKVSALQPEltekESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSK--- 535
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 477 qAENTIRKLQHQQQWHKCSSNYNeDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSlpDENNIARLqEELIA 556
Cdd:pfam10174 536 -LENQLKKAHNAEEAVRTNPEIN-DRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKND--KDKKIAEL-ESLTL 610
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 557 VKLREAEAIMGLKELRQQVKDLEEHWQRHLARttgRWKDPPKKNAMNELQDELMTIRLReaeTQAEIREIKQRMMEMETQ 636
Cdd:pfam10174 611 RQMKEQNKKVANIKHGQQEMKKKGAQLLEEAR---RREDNLADNSQQLQLEELMGALEK---TRQELDATKARLSSTQQS 684
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 637 NQINSNHL------RRAEQEVIsLQEKVQYLSA------QNKGLLtQLSEAKRKqaeiecKNKEEVMAVRlREADSIaaV 704
Cdd:pfam10174 685 LAEKDGHLtnlraeRRKQLEEI-LEMKQEALLAaisekdANIALL-ELSSSKKK------KTQEEVMALK-REKDRL--V 753
|
....*.
gi 1034561680 705 AELRQH 710
Cdd:pfam10174 754 HQLKQQ 759
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
379-750 |
4.91e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.26 E-value: 4.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 379 QAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRL--------IQGQVTRAQE 450
Cdd:PRK04863 276 RHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLnlvqtalrQQEKIERYQA 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 451 AEENYLIKRE-----LATIKQQSDEASAKLEQAENTIRKLQHQQqwhkcsSNYNEDFVLQLEKEL-----VQArLSEAES 520
Cdd:PRK04863 356 DLEELEERLEeqnevVEEADEQQEENEARAEAAEEEVDELKSQL------ADYQQALDVQQTRAIqyqqaVQA-LERAKQ 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 521 QCAL-------------------KEMQDKVLDIEKRNNSLPDenniARLQEELIAVKLREAEAIMGLKELRQQVKDLEEH 581
Cdd:PRK04863 429 LCGLpdltadnaedwleefqakeQEATEELLSLEQKLSVAQA----AHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRR 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 582 W--QRHLARTTgrwkdPPKKNAMNELQDELMtirlREAETQAEIREIKQRMMEMETQNQINSNHLRRAEQEVISLQEKVQ 659
Cdd:PRK04863 505 LreQRHLAEQL-----QQLRMRLSELEQRLR----QQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVS 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 660 YLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMA----VRLRE------ADSiAAVAELRQHIAELEIQKeegklqgQLNK 729
Cdd:PRK04863 576 EARERRMALRQQLEQLQARIQRLAARAPAWLAAqdalARLREqsgeefEDS-QDVTEYMQQLLEREREL-------TVER 647
|
410 420
....*....|....*....|.
gi 1034561680 730 SDSNQYIGELKDQIAELNHEG 750
Cdd:PRK04863 648 DELAARKQALDEEIERLSQPG 668
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
375-749 |
5.45e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.94 E-value: 5.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 375 DKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLL-------KQRIETLEKESASLAdrliqgqvtr 447
Cdd:TIGR04523 61 KNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKInseikndKEQKNKLEVELNKLE---------- 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 448 aQEAEENyliKRELATIKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQARLSEAESQCAL--- 524
Cdd:TIGR04523 131 -KQKKEN---KKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLsnl 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 525 -------KEMQDKVLDIEKRNNSLpdENNIARLQEELIAVKL---REAEAIMGLKELRQQVKDLEEHWQRHLARTTGRWK 594
Cdd:TIGR04523 207 kkkiqknKSLESQISELKKQNNQL--KDNIEKKQQEINEKTTeisNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 595 DppKKNAMNELQDELMTIRLREA-----ETQAEIREIKQRMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLL 669
Cdd:TIGR04523 285 E--LEKQLNQLKSEISDLNNQKEqdwnkELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQ 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 670 TQLSEaKRKQAEIECKNKEEVMAVRLREADSIAAVAELRQHIAELEIQKEEGKLQGQLNKSDSNQYIGELKDQIAELNHE 749
Cdd:TIGR04523 363 RELEE-KQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSE 441
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
376-715 |
5.53e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 5.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 376 KLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENY 455
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 456 LIKRELATIKQQSD---EASAKLEQAENTIRKLQHQQQ-------------WHKCSSNYNEDFVLQLEKELVQARLSEAE 519
Cdd:COG1196 481 ELLEELAEAAARLLlllEAEADYEGFLEGVKAALLLAGlrglagavavligVEAAYEAALEAALAAALQNIVVEDDEVAA 560
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 520 SQCA-LKEMQDK-----VLDIEKRNNSLPDENNIARLQEE--LIAVKLREAEA----IMGLKELRQQVKDLEEHWQRHLA 587
Cdd:COG1196 561 AAIEyLKAAKAGratflPLDKIRARAALAAALARGAIGAAvdLVASDLREADAryyvLGDTLLGRTLVAARLEAALRRAV 640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 588 RTTGRWKDppKKNAMNELQDELMTIRLR-------EAETQAEIREIKQRMMEMETQNQINSNHLRRAEQEVISLQEKVQY 660
Cdd:COG1196 641 TLAGRLRE--VTLEGEGGSAGGSLTGGSrrellaaLLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLE 718
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1034561680 661 LSAQNKGLLTQLSEAKRKQAEIECKNKEEVMAVRLREADSIAAVAELRQHIAELE 715
Cdd:COG1196 719 EELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
379-642 |
7.05e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 7.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 379 QAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQgqvtraqeaeenylIK 458
Cdd:TIGR02168 793 QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES--------------LA 858
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 459 RELATIKQQSDEASAKLEQAENtiRKLQHQQQWHKCSSNYNEdfvlqLEKELVQARLSEAESQCALKEMQDKVLDIEKRN 538
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLN--ERASLEEALALLRSELEE-----LSEELRELESKRSELRRELEELREKLAQLELRL 931
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 539 NSLpdENNIARLQEELIAVKLREAEAIMGLKELrqqVKDLEEHWQRHLARTTGRWKD--PPKKNAMNELQDElmTIRLRE 616
Cdd:TIGR02168 932 EGL--EVRIDNLQERLSEEYSLTLEEAEALENK---IEDDEEEARRRLKRLENKIKElgPVNLAAIEEYEEL--KERYDF 1004
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1034561680 617 AETQAE------------IREIKQRMME--METQNQINSN 642
Cdd:TIGR02168 1005 LTAQKEdlteaketleeaIEEIDREARErfKDTFDQVNEN 1044
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
374-580 |
7.71e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 7.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 374 PDKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRL----IQGQVTRAQ 449
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELaeleKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 450 EAEENYLIKRELATIKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQARLSEAESQCALKEMQD 529
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1034561680 530 KVLDIEKRNNSLpdENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEE 580
Cdd:COG4942 179 LLAELEEERAAL--EALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
518-711 |
1.02e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.92 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 518 AESQCALKEMQD---KVLDIEKRNNSLPDEnnIARLQEELIAVKLREAEAIMGLKELRQQVKDLE---EHWQRHLARTTG 591
Cdd:COG1579 3 PEDLRALLDLQEldsELDRLEHRLKELPAE--LAELEDELAALEARLEAAKTELEDLEKEIKRLEleiEEVEARIKKYEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 592 RWKDPPKKNAMNELQDELMTIRLREAETQAEIREIKQRMMEMETQNQINSNHLRRAEQEvisLQEKVQYLSAQNKGLLTQ 671
Cdd:COG1579 81 QLGNVRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAE---LEEKKAELDEELAELEAE 157
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1034561680 672 LSEAKRKQAEIECKNKEEVMAV--RLREADSIAAVAELRQHI 711
Cdd:COG1579 158 LEELEAEREELAAKIPPELLALyeRIRKRKNGLAVVPVEGGA 199
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
422-639 |
1.26e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 422 LKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELATIKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNED 501
Cdd:COG4717 51 LEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 502 FvlqLEKELVQARLSEAESQcaLKEMQDKVLDIEKRNNSLPD-ENNIARLQEELiaVKLREAEAIMGLKELRQQVKDLEE 580
Cdd:COG4717 131 Y---QELEALEAELAELPER--LEELEERLEELRELEEELEElEAELAELQEEL--EELLEQLSLATEEELQDLAEELEE 203
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1034561680 581 HWQRhlarttgrwkdppkknaMNELQDELMTIRLREAETQAEIREIKQRMMEMETQNQI 639
Cdd:COG4717 204 LQQR-----------------LAELEEELEEAQEELEELEEELEQLENELEAAALEERL 245
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
568-759 |
1.46e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 568 LKELRQQVKDLEEHWQRHlarttgrwkdppkknamNELQDELMTIRLREAETQAEIREIKQRMMEMETQNQINSNH--LR 645
Cdd:COG4717 73 LKELEEELKEAEEKEEEY-----------------AELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYqeLE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 646 RAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEevmAVRLREADSIAAVAELRQHIAELE-IQKEEGKLQ 724
Cdd:COG4717 136 ALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEE---LEELLEQLSLATEEELQDLAEELEeLQQRLAELE 212
|
170 180 190
....*....|....*....|....*....|....*
gi 1034561680 725 GQLNKSDsnQYIGELKDQIAELNHEGELGREGRNV 759
Cdd:COG4717 213 EELEEAQ--EELEELEEELEQLENELEAAALEERL 245
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
389-720 |
1.52e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 389 KKMKKLEKEYTTIKtkemEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENY-LIKRELATIKQQ 467
Cdd:COG4717 146 ERLEELEERLEELR----ELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLaELEEELEEAQEE 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 468 SDEASAKLEQAENTIRKLQHQQQWHKCSSNYN-----------------------------------EDFVLQLEKELVQ 512
Cdd:COG4717 222 LEELEEELEQLENELEAAALEERLKEARLLLLiaaallallglggsllsliltiagvlflvlgllalLFLLLAREKASLG 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 513 ARLSEAESQCALKEMQDKVLDIEKRNNSLPDENNIARLQEELIAVKlreaeaimGLKELRQQVKDLEEHWQRHLARTTgr 592
Cdd:COG4717 302 KEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIE--------ELQELLREAEELEEELQLEELEQE-- 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 593 wkdppKKNAMNELQDELMTIRLREAETQAEIREIKQRMMEMETQ--NQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLT 670
Cdd:COG4717 372 -----IAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQleELLGELEELLEALDEEELEEELEELEEELEELEE 446
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1034561680 671 QLSEAKRKQAEIEcknkeevmaVRLREADSIAAVAELRQHIAELEIQKEE 720
Cdd:COG4717 447 ELEELREELAELE---------AELEQLEEDGELAELLQELEELKAELRE 487
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
411-580 |
1.59e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 411 EIKRLRTENRLLKQRIETLEKESASLADRLIQgqvtraqeaeenylIKRELATIKQQSDEASAKLEQAENTIRKLQHQQQ 490
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEA--------------AKTELEDLEKEIKRLELEIEEVEARIKKYEEQLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 491 whkcSSNYNEDFV-LQLEKELVQARLSEAESQcaLKEMQDKVLDIEKRNNSLpdENNIARLQEELIAVKlREAEAImgLK 569
Cdd:COG1579 84 ----NVRNNKEYEaLQKEIESLKRRISDLEDE--ILELMERIEELEEELAEL--EAELAELEAELEEKK-AELDEE--LA 152
|
170
....*....|.
gi 1034561680 570 ELRQQVKDLEE 580
Cdd:COG1579 153 ELEAELEELEA 163
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
376-749 |
2.28e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 376 KLIQAAYQVKynsKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKesasLADRLIQGQVTRAQEAEENY 455
Cdd:PRK03918 183 KFIKRTENIE---ELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE----LKEEIEELEKELESLEGSKR 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 456 LIKRELATIKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNEdFVLQLEKEL--VQARLSEAESQcaLKEMQDKVLD 533
Cdd:PRK03918 256 KLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSE-FYEEYLDELreIEKRLSRLEEE--INGIEERIKE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 534 IEKRNNSLpdeNNIARLQEELiavkLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGRWKDppkknamnELQDELMTIR 613
Cdd:PRK03918 333 LEEKEERL---EELKKKLKEL----EKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPE--------KLEKELEELE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 614 LREAETQAEIREIKQRMMEMETQnqinsnhlrraeqevislqekvqylSAQNKGLLTQLSEAKRK----QAEIECKNKEE 689
Cdd:PRK03918 398 KAKEEIEEEISKITARIGELKKE-------------------------IKELKKAIEELKKAKGKcpvcGRELTEEHRKE 452
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034561680 690 VMAVRLREADSIAA-VAELRQHIAELEiqKEEGKLQGQLNKSDSNQYIGELKDQIAELNHE 749
Cdd:PRK03918 453 LLEEYTAELKRIEKeLKEIEEKERKLR--KELRELEKVLKKESELIKLKELAEQLKELEEK 511
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
412-724 |
2.32e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.03 E-value: 2.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 412 IKRLR--TENRLLKQRIETLEKESASLADRLiqgQVTRAQEAEenylIKRELATIKQQSDEASAKLEQAENTIRKLQHQQ 489
Cdd:PRK02224 178 VERVLsdQRGSLDQLKAQIEEKEEKDLHERL---NGLESELAE----LDEEIERYEEQREQARETRDEADEVLEEHEERR 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 490 QwhkcssnynEDFVLQLEKELVQARLSEAESQC-----ALKEMQDKVLDIEKRNNSLPDENNIARLQEELIAVKL----- 559
Cdd:PRK02224 251 E---------ELETLEAEIEDLRETIAETEREReelaeEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARReeled 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 560 REAEAIMGLKELRQQVKDLEEHWQRHLARTT---GRWKDppKKNAMNELQDELMTIR--LREAETQ-----AEIREIKQR 629
Cdd:PRK02224 322 RDEELRDRLEECRVAAQAHNEEAESLREDADdleERAEE--LREEAAELESELEEAReaVEDRREEieeleEEIEELRER 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 630 MMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEvmavRLREADSIAAVAELRQ 709
Cdd:PRK02224 400 FGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQ----PVEGSPHVETIEEDRE 475
|
330
....*....|....*
gi 1034561680 710 HIAELEIQKEEGKLQ 724
Cdd:PRK02224 476 RVEELEAELEDLEEE 490
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
547-761 |
2.67e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 547 IARLQEELIAVKLREAEAIMGLKELRQQVKDLEehwqrhlarttgrwKDPPKKNAMNELQDElmtirLREAETQAEIREI 626
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLR--------------REREKAERYQALLKE-----KREYEGYELLKEK 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 627 KqrmmEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKqaeIECKNKEEVMAVRLREADSIAAVAE 706
Cdd:TIGR02169 233 E----ALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKK---IKDLGEEEQLRVKEKIGELEAEIAS 305
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1034561680 707 LRQHIAELEIQKEEgkLQGQLNKSDSNqyIGELKDQIAELnhEGELGREGRNVIP 761
Cdd:TIGR02169 306 LERSIAEKERELED--AEERLAKLEAE--IDKLLAEIEEL--EREIEEERKRRDK 354
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
547-747 |
2.85e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 2.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 547 IARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGRWKD---PPKKNAMNELQDE----------LMTIR 613
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEidvASAEREIAELEAElerldassddLAALE 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 614 LREAETQAEIREIKQRMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIEC--------- 684
Cdd:COG4913 692 EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAverelrenl 771
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 685 ----------KNKEEVMAVRLREA-------------DSIAAVAELRQHIAELE----IQKEEgKLQGQLNKSdSNQYIG 737
Cdd:COG4913 772 eeridalrarLNRAEEELERAMRAfnrewpaetadldADLESLPEYLALLDRLEedglPEYEE-RFKELLNEN-SIEFVA 849
|
250 260
....*....|....*....|.
gi 1034561680 738 EL-----------KDQIAELN 747
Cdd:COG4913 850 DLlsklrraireiKERIDPLN 870
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
383-752 |
4.02e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 4.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 383 QVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRliqGQVTRAQEAEENYLIKR--E 460
Cdd:TIGR00618 436 QQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVV---LARLLELQEEPCPLCGSciH 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 461 LATIKQQSDEASA---KLEQAENTIRKLQHQQQ--WHKCSSNYNEDFVLQLEKELVQARLSEAESQ-CALKEMQDKVLDI 534
Cdd:TIGR00618 513 PNPARQDIDNPGPltrRMQRGEQTYAQLETSEEdvYHQLTSERKQRASLKEQMQEIQQSFSILTQCdNRSKEDIPNLQNI 592
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 535 EKRNNSLPDENNIARLQ-EELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGRWKDPPKKNAMNEL----QDEL 609
Cdd:TIGR00618 593 TVRLQDLTEKLSEAEDMlACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHAlsirVLPK 672
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 610 MTIRLREAETQAEIREIKQRMMEMETQNQINSNhLRRAEQEVISLQEKVQYLS----------AQNKGLLTQLSEAKRKQ 679
Cdd:TIGR00618 673 ELLASRQLALQKMQSEKEQLTYWKEMLAQCQTL-LRELETHIEEYDREFNEIEnassslgsdlAAREDALNQSLKELMHQ 751
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034561680 680 AEIECKNKEEVMAVR-LREADSIAAVAELRQHIAELEIQKEEGKLQGQLNKSDSNQYIGELKDQIAELNHEGEL 752
Cdd:TIGR00618 752 ARTVLKARTEAHFNNnEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCET 825
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
387-758 |
5.15e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 5.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 387 NSKKMKKLEKEYTTIKTKEMEeqveikrLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELatikq 466
Cdd:pfam15921 312 NSMYMRQLSDLESTVSQLRSE-------LREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQL----- 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 467 QSDEASAKLEQAENTIRKLQHQQQWHKCSSnyNEDFVLQLEKEL---------VQARLSEAESQCAlKEMQDKVLDIEKR 537
Cdd:pfam15921 380 QKLLADLHKREKELSLEKEQNKRLWDRDTG--NSITIDHLRRELddrnmevqrLEALLKAMKSECQ-GQMERQMAAIQGK 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 538 NNSLpdeNNIARLQEELIAVK--LREAeaimgLKELRQQVKDLEEHwQRHLARTTGRWKDppKKNAMNELQDELMTIRLR 615
Cdd:pfam15921 457 NESL---EKVSSLTAQLESTKemLRKV-----VEELTAKKMTLESS-ERTVSDLTASLQE--KERAIEATNAEITKLRSR 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 616 EAETQAEIREIKQRmmemetqnqinSNHLRRAEQEVISL------QEKVQYLSAQNKGLLTQLS----------EAKRKQ 679
Cdd:pfam15921 526 VDLKLQELQHLKNE-----------GDHLRNVQTECEALklqmaeKDKVIEILRQQIENMTQLVgqhgrtagamQVEKAQ 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 680 AEIECKNKE-EVMAVRLREADSIAAVAELRQHIAELEIQKEEGKLQGQLN-------KSDSNQYIGELKDQIAELNHEGE 751
Cdd:pfam15921 595 LEKEINDRRlELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERlravkdiKQERDQLLNEVKTSRNELNSLSE 674
|
410
....*....|.
gi 1034561680 752 ----LGREGRN 758
Cdd:pfam15921 675 dyevLKRNFRN 685
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
389-751 |
5.22e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.74 E-value: 5.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 389 KKMKKLEKEYTTIKTKEMEEQVEIKRLRTenrlLKQRIETLEKESASLADRLIQGQVTRAQEAEEnylIKRELATIKQQS 468
Cdd:PRK01156 346 SRYDDLNNQILELEGYEMDYNSYLKSIES----LKKKIEEYSKNIERMSAFISEILKIQEIDPDA---IKKELNEINVKL 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 469 DEASAKLEQAENTIRKL-QHQQQWHK-------------CSSNYNEDFVLQLEKELVQ--ARLSEA--ESQCALKEMQDK 530
Cdd:PRK01156 419 QDISSKVSSLNQRIRALrENLDELSRnmemlngqsvcpvCGTTLGEEKSNHIINHYNEkkSRLEEKirEIEIEVKDIDEK 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 531 VLDIEKR---------NNSLPDENNIARLQEELIAVKLREAEaimgLKELRQQVKDLEEHWQR-HLARTTGRWKDPPKKN 600
Cdd:PRK01156 499 IVDLKKRkeyleseeiNKSINEYNKIESARADLEDIKIKINE----LKDKHDKYEEIKNRYKSlKLEDLDSKRTSWLNAL 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 601 AMNELQDeLMTIRLREAETQAEIREIKQRMMEMETQ----NQINSNHLRRAEQEVISLQEKVqylsaqnkglltQLSEAK 676
Cdd:PRK01156 575 AVISLID-IETNRSRSNEIKKQLNDLESRLQEIEIGfpddKSYIDKSIREIENEANNLNNKY------------NEIQEN 641
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 677 RKQAEiECKNKEEVMAVRLREADSIA-AVAELRQHIaeLEIQKEEGKLQGQLNKSDSNQY------------IGELKDQI 743
Cdd:PRK01156 642 KILIE-KLRGKIDNYKKQIAEIDSIIpDLKEITSRI--NDIEDNLKKSRKALDDAKANRArlestieilrtrINELSDRI 718
|
....*...
gi 1034561680 744 AELNHEGE 751
Cdd:PRK01156 719 NDINETLE 726
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
368-747 |
6.87e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 6.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 368 HQFDGVPDKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLL-------KQRIETLEKESASLADRL 440
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLndklkknKDKINKLNSDLSKINSEI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 441 -IQGQVTRAQEAEENYL------IKRELATIKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQA 513
Cdd:TIGR04523 113 kNDKEQKNKLEVELNKLekqkkeNKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKI 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 514 RLSEAESQCAL----------KEMQDKVLDIEKRNNSLpdENNIARLQEELIAVKL---REAEAIMGLKELRQQVKDLEE 580
Cdd:TIGR04523 193 KNKLLKLELLLsnlkkkiqknKSLESQISELKKQNNQL--KDNIEKKQQEINEKTTeisNTQTQLNQLKDEQNKIKKQLS 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 581 HWQRHLARTTGRWKDppKKNAMNELQDELMTI---------------------RLREAETQ------------AEIREIK 627
Cdd:TIGR04523 271 EKQKELEQNNKKIKE--LEKQLNQLKSEISDLnnqkeqdwnkelkselknqekKLEEIQNQisqnnkiisqlnEQISQLK 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 628 QRMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKeevmavrlreadsiaavaEL 707
Cdd:TIGR04523 349 KELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQ------------------QK 410
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1034561680 708 RQHIAELEIQKEEGKLQGQLNKS---DSNQYIGELKDQIAELN 747
Cdd:TIGR04523 411 DEQIKKLQQEKELLEKEIERLKEtiiKNNSEIKDLTNQDSVKE 453
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
395-489 |
6.98e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 43.31 E-value: 6.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 395 EKEYTTIKTKEMEEQV-----EIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEA----------EENYLIKR 459
Cdd:COG2433 400 EKEHEERELTEEEEEIrrleeQVERLEAEVEELEAELEEKDERIERLERELSEARSEERREIrkdreisrldREIERLER 479
|
90 100 110
....*....|....*....|....*....|
gi 1034561680 460 ELATIKQQSDEASAKLEQAEnTIRKLQHQQ 489
Cdd:COG2433 480 ELEEERERIEELKRKLERLK-ELWKLEHSG 508
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
374-633 |
7.02e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 7.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 374 PDKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQvtRAQEAEE 453
Cdd:COG4913 684 SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEER--FAAALGD 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 454 NYLiKRELATIKQQSDEASAKLEQAENTIRKL--QHQQQWHKCSSN------YNEDFVLQLEKeLVQARLSEAESQcaLK 525
Cdd:COG4913 762 AVE-RELRENLEERIDALRARLNRAEEELERAmrAFNREWPAETADldadleSLPEYLALLDR-LEEDGLPEYEER--FK 837
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 526 EMQdkvldieKRNNslpdENNIARLQEELiavkLREAEAIMG-LKELRQQVKDLEEHWQRHLARTTGRWKDPpkknAMNE 604
Cdd:COG4913 838 ELL-------NENS----IEFVADLLSKL----RRAIREIKErIDPLNDSLKRIPFGPGRYLRLEARPRPDP----EVRE 898
|
250 260 270
....*....|....*....|....*....|...
gi 1034561680 605 LQDELMTIRLREAETQAEIREIK----QRMMEM 633
Cdd:COG4913 899 FRQELRAVTSGASLFDEELSEARfaalKRLIER 931
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
392-709 |
9.00e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.89 E-value: 9.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 392 KKLE--KEYTTIKTKEMEEQVE-IKRLRTENRLLKQRIETLEkESASLADRLI-----QGQVTRAQEAEENYLIKRELAT 463
Cdd:pfam10174 401 KKIEnlQEQLRDKDKQLAGLKErVKSLQTDSSNTDTALTTLE-EALSEKERIIerlkeQREREDRERLEELESLKKENKD 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 464 IKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQAR-------------LSEAESQCALKEMQDK 530
Cdd:pfam10174 480 LKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKeecsklenqlkkaHNAEEAVRTNPEINDR 559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 531 VLDIEKRNNSLPDENNIARLQEELIAVKLREAEAIMGLKElrQQVKDLEEHWQRHLarttgrwKDPPKKNAMNELQDELM 610
Cdd:pfam10174 560 IRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKD--KKIAELESLTLRQM-------KEQNKKVANIKHGQQEM 630
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 611 tiRLREAETQAEIREIKQRMMEMETQNQINS--NHLRRAEQEVISLQEKV---QYLSAQNKGLLTQLSEAKRKQAEIECK 685
Cdd:pfam10174 631 --KKKGAQLLEEARRREDNLADNSQQLQLEElmGALEKTRQELDATKARLsstQQSLAEKDGHLTNLRAERRKQLEEILE 708
|
330 340
....*....|....*....|....
gi 1034561680 686 NKEEVMAVRLREADSIAAVAELRQ 709
Cdd:pfam10174 709 MKQEALLAAISEKDANIALLELSS 732
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
506-724 |
1.16e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 506 LEKEL--VQARLSEAESqcALKEMQDK--VLDIEKRNNSLpdENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEeh 581
Cdd:COG3206 180 LEEQLpeLRKELEEAEA--ALEEFRQKngLVDLSEEAKLL--LQQLSELESQLAEARAELAEAEARLAALRAQLGSGP-- 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 582 wqrhlarttgrwkdppkkNAMNELQD--ELMTIRLREAETQAEIREIKQRMMEmetqnqinsNHlrraeQEVISLQEKVQ 659
Cdd:COG3206 254 ------------------DALPELLQspVIQQLRAQLAELEAELAELSARYTP---------NH-----PDVIALRAQIA 301
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034561680 660 YLSAQNKglltqlSEAKRKQAEIEcknkEEVMAVRLREADSIAAVAELRQHIAEL-EIQKEEGKLQ 724
Cdd:COG3206 302 ALRAQLQ------QEAQRILASLE----AELEALQAREASLQAQLAQLEARLAELpELEAELRRLE 357
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
389-747 |
1.26e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.70 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 389 KKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRL--IQGQV--TRAQEAEENYLI------- 457
Cdd:TIGR04523 131 KQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKlnIQKNIdkIKNKLLKLELLLsnlkkki 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 458 -------------KRELATIKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQA--RLSEAESQC 522
Cdd:TIGR04523 211 qknkslesqiselKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNnkKIKELEKQL 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 523 ALKEMQDKVLDIEKRNNSLPD-ENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHwqrhlaRTTGRWKDPPKKNA 601
Cdd:TIGR04523 291 NQLKSEISDLNNQKEQDWNKElKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKE------LTNSESENSEKQRE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 602 MNELQDELMTIRLREAETQAEIREIKQRMMEMETQ-------NQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSE 674
Cdd:TIGR04523 365 LEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKiqnqeklNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKD 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 675 AKRKQAEIECKNK---------EEVMAVRLREADSIAAvaELRQHIAELEIQKEEGKlqgQLN--KSDSNQYIGELKDQI 743
Cdd:TIGR04523 445 LTNQDSVKELIIKnldntreslETQLKVLSRSINKIKQ--NLEQKQKELKSKEKELK---KLNeeKKELEEKVKDLTKKI 519
|
....
gi 1034561680 744 AELN 747
Cdd:TIGR04523 520 SSLK 523
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
473-653 |
1.30e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 473 AKLEQAENTIRKLQHQQQwhkcssNYNEdfvLQLEKELVQARLSEAESQcaLKEMQDKVLDIEKRNNSLPDENNIARLQE 552
Cdd:COG4717 71 KELKELEEELKEAEEKEE------EYAE---LQEELEELEEELEELEAE--LEELREELEKLEKLLQLLPLYQELEALEA 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 553 ELIAVKLREAEAIMGLKELRQQVKDLE------EHWQRHLARTTGRWkDPPKKNAMNELQDELMTIRLREAETQAEIREI 626
Cdd:COG4717 140 ELAELPERLEELEERLEELRELEEELEeleaelAELQEELEELLEQL-SLATEEELQDLAEELEELQQRLAELEEELEEA 218
|
170 180
....*....|....*....|....*...
gi 1034561680 627 KQRMMEMETQ-NQINSNHLRRAEQEVIS 653
Cdd:COG4717 219 QEELEELEEElEQLENELEAAALEERLK 246
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
389-745 |
1.75e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 389 KKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELATIKQQS 468
Cdd:TIGR04523 349 KELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEI 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 469 DEASAKLEQAENTIRKLQhqqqwhkcssnyNEDFVLQLE-KELVQARLSEaesqcalkEMQDKVLDIEKRNNslpdENNI 547
Cdd:TIGR04523 429 ERLKETIIKNNSEIKDLT------------NQDSVKELIiKNLDNTRESL--------ETQLKVLSRSINKI----KQNL 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 548 ARLQEELiavKLREAEaimgLKELRQQVKDLEEhwqrhlarttgRWKDPPKKNAMNELQDELMTIRLREAETqaEIREIK 627
Cdd:TIGR04523 485 EQKQKEL---KSKEKE----LKKLNEEKKELEE-----------KVKDLTKKISSLKEKIEKLESEKKEKES--KISDLE 544
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 628 QRMMEMETQNqiNSNHLrraEQEVISLQEKVQYLSAQNKGLltqlsEAKRKQAEIECKNKE-EVMAVRLREADSIAAVAE 706
Cdd:TIGR04523 545 DELNKDDFEL--KKENL---EKEIDEKNKEIEELKQTQKSL-----KKKQEEKQELIDQKEkEKKDLIKEIEEKEKKISS 614
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1034561680 707 LRQHIAelEIQKEEGKLQGQLNKSDS-----NQYIGELKDQIAE 745
Cdd:TIGR04523 615 LEKELE--KAKKENEKLSSIIKNIKSkknklKQEVKQIKETIKE 656
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
369-570 |
1.76e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 369 QFDGVPDKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLiqGQVTRA 448
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL--GERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 449 ---QEAEENYL------------IKReLATIKQQSDEASAKLEQAENTIRKLQHQQQwhkcssnynedfvlQLEKELVQA 513
Cdd:COG3883 95 lyrSGGSVSYLdvllgsesfsdfLDR-LSALSKIADADADLLEELKADKAELEAKKA--------------ELEAKLAEL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1034561680 514 RLSEAESQCALKEMQDKVLDIEKRNNSLPDENNIARLQEELIAVKLREAEAIMGLKE 570
Cdd:COG3883 160 EALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAA 216
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
455-622 |
1.85e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 455 YLIKRELATIKQQSDEASAK--LEQAE---NTIRK---LQHQQQWHKCSSnynedfvlQLEKELVQAR--LSEAESQCAL 524
Cdd:PRK12704 22 YFVRKKIAEAKIKEAEEEAKriLEEAKkeaEAIKKealLEAKEEIHKLRN--------EFEKELRERRneLQKLEKRLLQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 525 KEMQ--DKVLDIEKRNNSLPD-ENNIARLQEEliavklreaeaimgLKELRQQVKDLEEHWQRHLARTTGRWKDPPKKNA 601
Cdd:PRK12704 94 KEENldRKLELLEKREEELEKkEKELEQKQQE--------------LEKKEEELEELIEEQLQELERISGLTAEEAKEIL 159
|
170 180
....*....|....*....|....
gi 1034561680 602 MNELQDEL---MTIRLREAETQAE 622
Cdd:PRK12704 160 LEKVEEEArheAAVLIKEIEEEAK 183
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
599-760 |
2.65e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 599 KNAMNELQDELMTIR--LREAEtqAEIREIKQR--MMEMETQNQINSNHLRRAEQEVISLQekvqylsaqnkgllTQLSE 674
Cdd:COG3206 174 RKALEFLEEQLPELRkeLEEAE--AALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEAR--------------AELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 675 AKRKQAEIECKNKEEVMAVRLREADSiaAVAELRQHIAELEIQKEEgkLQGQLnkSDSNQYIGELKDQIAELnhEGELGR 754
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPELLQSP--VIQQLRAQLAELEAELAE--LSARY--TPNHPDVIALRAQIAAL--RAQLQQ 309
|
....*.
gi 1034561680 755 EGRNVI 760
Cdd:COG3206 310 EAQRIL 315
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
389-664 |
3.24e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 3.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 389 KKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADR-----------------LIQGQVTRAQEA 451
Cdd:COG4717 192 EELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEerlkearlllliaaallALLGLGGSLLSL 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 452 EEN----------------YLIKRELATIKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQARL 515
Cdd:COG4717 272 ILTiagvlflvlgllallfLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 516 SEAESQCALKEMQdkVLDIEKRNNSLPDENNIArlQEELIAVKLREAEAimgLKELRQQVKDLEEHWQRHLARTTGRWKD 595
Cdd:COG4717 352 LLREAEELEEELQ--LEELEQEIAALLAEAGVE--DEEELRAALEQAEE---YQELKEELEELEEQLEELLGELEELLEA 424
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034561680 596 PPKKNAMNELQDELMTIRLREAET---QAEIREIKQRMMEMETQNQinsnhLRRAEQEVISLQEKVQYLSAQ 664
Cdd:COG4717 425 LDEEELEEELEELEEELEELEEELeelREELAELEAELEQLEEDGE-----LAELLQELEELKAELRELAEE 491
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
389-690 |
5.59e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.39 E-value: 5.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 389 KKMKKLEKEY-TTIKTKEMEEQV---EIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELATI 464
Cdd:TIGR04523 401 QNQEKLNQQKdEQIKKLQQEKELlekEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKI 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 465 KQQSDEASAKLEQAENTIRKLQHQQqwhKCSSNYNEDFVLQLEKELVQARLSEAEsqcaLKEMQDKVLDIEKRNNSLPDE 544
Cdd:TIGR04523 481 KQNLEQKQKELKSKEKELKKLNEEK---KELEEKVKDLTKKISSLKEKIEKLESE----KKEKESKISDLEDELNKDDFE 553
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 545 NNIARLQEELIAVKLReaeaimgLKELRQQVKDLEEhwqrhlarttgrwKDPPKKNAMNELQDELMTIRLREAETQAEIR 624
Cdd:TIGR04523 554 LKKENLEKEIDEKNKE-------IEELKQTQKSLKK-------------KQEEKQELIDQKEKEKKDLIKEIEEKEKKIS 613
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034561680 625 EIKQRMMEMETQNqinsnhlRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEV 690
Cdd:TIGR04523 614 SLEKELEKAKKEN-------EKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESK 672
|
|
| DUF1129 |
pfam06570 |
Protein of unknown function (DUF1129); This family consists of several hypothetical bacterial ... |
496-536 |
5.63e-03 |
|
Protein of unknown function (DUF1129); This family consists of several hypothetical bacterial proteins of unknown function.
Pssm-ID: 429008 Cd Length: 200 Bit Score: 39.18 E-value: 5.63e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1034561680 496 SNYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEK 536
Cdd:pfam06570 3 TKKNQDYIFRLTKQLIKDGKSDEEIKEILDEMLPEILEGQK 43
|
|
| Fibrinogen_BP |
pfam08017 |
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family ... |
507-738 |
5.75e-03 |
|
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation.
Pssm-ID: 311808 [Multi-domain] Cd Length: 393 Bit Score: 40.23 E-value: 5.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 507 EKELVQARLSEAESQCALKEMQDKVLDIEKRN--NSLPDENNIARLQEELIAVKLREAEAimglkELRQQVKDLEEHWQR 584
Cdd:pfam08017 75 QGNVLERRQRDAENRSQGNVLERRQRDAENRSqgNVLERRQRDAENKSQGNVLERRQRDA-----ENRSQGNVLERRQRD 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 585 HLARTTGRWKDPPKKNAMNELQDELMTIRLREAE--TQAEIREIKQRMMEMETQNQINSNHLRRAEQEVISLQEKVQYLS 662
Cdd:pfam08017 150 AENRSQGNVLERRQRDAENRSQGNVLERRQRDAEnkSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRD 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 663 AQNKgllTQLSEAKRKQAEIECKNKEEVMAVRLREAD--SIAAVAELRQHIAELEIQKE--EGKLQGQLNKSDSNQYIGE 738
Cdd:pfam08017 230 AENR---SQGNVLERRQRDAENKSQGNVLERRQRDAEnrSQGNVLERRQRDAENRSQGNvlERRQRDAENKSQVGQLIGK 306
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
422-651 |
5.99e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 40.28 E-value: 5.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 422 LKQRIETLEK-ESASLADRLIQGQVTRAQEaeenYL-----IKRELATIKQQSDEASAKLEQAENTIRKLQHQQQwhkcs 495
Cdd:PRK11281 41 VQAQLDALNKqKLLEAEDKLVQQDLEQTLA----LLdkidrQKEETEQLKQQLAQAPAKLRQAQAELEALKDDND----- 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 496 SNYNEDF----VLQLEKEL---------VQARLSEAES------------QCALKEMQDKVLDIEKRNNSLPDENN---- 546
Cdd:PRK11281 112 EETRETLstlsLRQLESRLaqtldqlqnAQNDLAEYNSqlvslqtqperaQAALYANSQRLQQIRNLLKGGKVGGKalrp 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 547 --IARLQEELIAVKL------REAEAIMGLKELRQQVKDLEEHWQRHLARTTgrwkdppkknamNELQDELMTIRLREAE 618
Cdd:PRK11281 192 sqRVLLQAEQALLNAqndlqrKSLEGNTQLQDLLQKQRDYLTARIQRLEHQL------------QLLQEAINSKRLTLSE 259
|
250 260 270
....*....|....*....|....*....|....*.
gi 1034561680 619 TQAEireikqrmmEMETQ---NQINSNHLRRAEQEV 651
Cdd:PRK11281 260 KTVQ---------EAQSQdeaARIQANPLVAQELEI 286
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
544-751 |
6.39e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 6.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 544 ENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGrwkdppKKNAMNELQDELmtirlreAETQAEI 623
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEA------LQAEIDKLQAEI-------AEAEAEI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 624 REIKQRMMEMETQNQINSNHLRRAE--------QEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEvmavrl 695
Cdd:COG3883 82 EERREELGERARALYRSGGSVSYLDvllgsesfSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAK------ 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1034561680 696 rEADSIAAVAELRQHIAELEIQKEEgkLQGQLNKSDSNQyiGELKDQIAELNHEGE 751
Cdd:COG3883 156 -LAELEALKAELEAAKAELEAQQAE--QEALLAQLSAEE--AAAEAQLAELEAELA 206
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
500-758 |
7.34e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.16 E-value: 7.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 500 EDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSLPD----ENNIARLQEEL---IAVKLREAEAIMG----- 567
Cdd:pfam01576 4 EEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEqlqaETELCAEAEEMrarLAARKQELEEILHelesr 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 568 --------------LKELRQQVKDLEEHW-QRHLARTTGRWKDPPKKNAMNELQDELMTIRLREAETQAEIREIKQRMME 632
Cdd:pfam01576 84 leeeeersqqlqneKKKMQQHIQDLEEQLdEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 633 METQnqinsnhLRRAEQEVISLQEkvqyLSAQNKGLLTQLS-----EAKRKQAEIECKNKEEVMAVRLREadsiaAVAEL 707
Cdd:pfam01576 164 FTSN-------LAEEEEKAKSLSK----LKNKHEAMISDLEerlkkEEKGRQELEKAKRKLEGESTDLQE-----QIAEL 227
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034561680 708 RQHIAELEIQ--KEEGKLQGQLNKSDSNQ--------YIGELKDQIAELNHEGELGREGRN 758
Cdd:pfam01576 228 QAQIAELRAQlaKKEEELQAALARLEEETaqknnalkKIRELEAQISELQEDLESERAARN 288
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
505-752 |
9.61e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 39.82 E-value: 9.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 505 QLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSLpdENNIARLQ---------EELIAVKLREAEAimGLKELRQQV 575
Cdd:pfam12128 217 RLNRQQVEHWIRDIQAIAGIMKIRPEFTKLQQEFNTL--ESAELRLShlhfgyksdETLIASRQEERQE--TSAELNQLL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 576 KDLEEHWQRHLARTTGRWKDPPKKNAMNELQDELMTIRLReaetQAEIREIKQRMMEMETQNQINSNhlrraeqevISLQ 655
Cdd:pfam12128 293 RTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHG----AFLDADIETAAADQEQLPSWQSE---------LENL 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561680 656 EKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMAVRL----READSIAAVAE--LRQHIAELEIQKEEGKLQGQLNK 729
Cdd:pfam12128 360 EERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLakirEARDRQLAVAEddLQALESELREQLEAGKLEFNEEE 439
|
250 260
....*....|....*....|...
gi 1034561680 730 SDSNQYIGELKDQIAELNHEGEL 752
Cdd:pfam12128 440 YRLKSRLGELKLRLNQATATPEL 462
|
|
| BicD |
pfam09730 |
Microtubule-associated protein Bicaudal-D; BicD proteins consist of three coiled-coiled ... |
600-793 |
9.77e-03 |
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Microtubule-associated protein Bicaudal-D; BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER). For full functioning they bind with GSK-3beta pfam05350 to maintain the anchoring of microtubules to the centromere. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells.
Pssm-ID: 462863 [Multi-domain] Cd Length: 717 Bit Score: 39.46 E-value: 9.77e-03
10 20 30 40 50 60 70 80
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gi 1034561680 600 NAMNELQDELMTIRLREAETQAEIREIKQRMMEMETQNQ---INSNHLR------------------RAEQEVISLQEKV 658
Cdd:pfam09730 34 QRILELQNELKQARAVLSNTQAENERLASLSQELKEECEcveLQRGRMRdeikeykvrearllqdysELEEENISLQKQV 113
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90 100 110 120 130 140 150 160
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gi 1034561680 659 QYLSaQNKGLLTQLS-EAKRKQAEIECKNKEEVMAVRLREadsiaaVAElRQHIAELEIQKEEGKLQGQLNKSDSNQ--- 734
Cdd:pfam09730 114 SVLK-QNQVEFEGLKhEITRKEEETELLNSQLEEAIRLRE------IAE-RQLDEALETLKTEREQKNSLRKELSHYmtl 185
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170 180 190 200 210 220
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gi 1034561680 735 ----YIGELKDQIAELNHEGELGREGRnvipdwhsPHAEGNLMSGKQHSSPTLRCLKGQRGFS 793
Cdd:pfam09730 186 ndfdYVSHLSISLDGLKFSEDEGAGTE--------PNNDGEAMDGGENGGGGLKNSGLDNRTS 240
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