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Conserved domains on  [gi|158288817|ref|XP_001688307|]
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AGAP000447-PA [Anopheles gambiae str. PEST]

Protein Classification

RAP domain-containing protein( domain architecture ID 10658821)

RAP domain-containing protein binds RNA, similar to Arabidopsis thaliana RAP domain-containing protein (AtRAP) that binds to the 16S rRNA precursor, is involved in its 5'-end processing, and is required for chloroplast 16S rRNA maturation, an important process which supports chloroplast gene expression and biogenesis

Gene Ontology:  GO:0003723
PubMed:  15501674

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RAP smart00952
This domain is found in various eukaryotic species, particularly in apicomplexans; In ...
 574-630 6.46e-12

This domain is found in various eukaryotic species, particularly in apicomplexans; In Plasmodium falciparum, the domain is found in proteins that are important in various parasite-host cell interactions. It is thought to be an RNA-binding domain.


:

Pssm-ID: 214932  Cd Length: 58  Bit Score: 60.71  E-value: 6.46e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 158288817   574 IVVGSWNCYVRDERRRTGGYAMKLEQLRRLHYDTLEIPWYEWPVY-SRDDMRRYLEAK 630
Cdd:smart00952   1 IEVDGPSHFCRNSRHLLGRLALKKRHLEALGYKVISIPYYEWNKLkSEDEKVEYLKEK 58
 
Name Accession Description Interval E-value
RAP smart00952
This domain is found in various eukaryotic species, particularly in apicomplexans; In ...
 574-630 6.46e-12

This domain is found in various eukaryotic species, particularly in apicomplexans; In Plasmodium falciparum, the domain is found in proteins that are important in various parasite-host cell interactions. It is thought to be an RNA-binding domain.


Pssm-ID: 214932  Cd Length: 58  Bit Score: 60.71  E-value: 6.46e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 158288817   574 IVVGSWNCYVRDERRRTGGYAMKLEQLRRLHYDTLEIPWYEWPVY-SRDDMRRYLEAK 630
Cdd:smart00952   1 IEVDGPSHFCRNSRHLLGRLALKKRHLEALGYKVISIPYYEWNKLkSEDEKVEYLKEK 58
RAP pfam08373
RAP domain; This domain is found in various eukaryotic species, where it is found in proteins ...
 580-630 1.62e-05

RAP domain; This domain is found in various eukaryotic species, where it is found in proteins that are important in various parasite-host cell interactions. It is thought to be an RNA-binding domain. The domain is involved in plant defence in response to bacterial infection.


Pssm-ID: 429953  Cd Length: 58  Bit Score: 42.57  E-value: 1.62e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 158288817  580 NCYVRDERRRTGGYAMKLEQLRRLHYDTLEIPWYEW-PVYSRDDMRRYLEAK 630
Cdd:pfam08373   7 SHFYRNSKQLTGSTKLKHRLLSALGYKVISIPYYEWnQLKTKEEKVEYLKKK 58
 
Name Accession Description Interval E-value
RAP smart00952
This domain is found in various eukaryotic species, particularly in apicomplexans; In ...
 574-630 6.46e-12

This domain is found in various eukaryotic species, particularly in apicomplexans; In Plasmodium falciparum, the domain is found in proteins that are important in various parasite-host cell interactions. It is thought to be an RNA-binding domain.


Pssm-ID: 214932  Cd Length: 58  Bit Score: 60.71  E-value: 6.46e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 158288817   574 IVVGSWNCYVRDERRRTGGYAMKLEQLRRLHYDTLEIPWYEWPVY-SRDDMRRYLEAK 630
Cdd:smart00952   1 IEVDGPSHFCRNSRHLLGRLALKKRHLEALGYKVISIPYYEWNKLkSEDEKVEYLKEK 58
RAP pfam08373
RAP domain; This domain is found in various eukaryotic species, where it is found in proteins ...
 580-630 1.62e-05

RAP domain; This domain is found in various eukaryotic species, where it is found in proteins that are important in various parasite-host cell interactions. It is thought to be an RNA-binding domain. The domain is involved in plant defence in response to bacterial infection.


Pssm-ID: 429953  Cd Length: 58  Bit Score: 42.57  E-value: 1.62e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 158288817  580 NCYVRDERRRTGGYAMKLEQLRRLHYDTLEIPWYEW-PVYSRDDMRRYLEAK 630
Cdd:pfam08373   7 SHFYRNSKQLTGSTKLKHRLLSALGYKVISIPYYEWnQLKTKEEKVEYLKKK 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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