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Conserved domains on  [gi|299890805|ref|NP_001177750|]
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mothers against decapentaplegic homolog 7 isoform 2 [Homo sapiens]

Protein Classification

MH1_SMAD_7 and MH2_SMAD_7 domain-containing protein( domain architecture ID 10180373)

MH1_SMAD_7 and MH2_SMAD_7 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MH2_SMAD_7 cd10500
C-terminal Mad Homology 2 (MH2) domain in SMAD7; The MH2 domain is located at the C-terminus ...
 253-423 9.07e-131

C-terminal Mad Homology 2 (MH2) domain in SMAD7; The MH2 domain is located at the C-terminus of the SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. The MH2 domain is responsible for type I receptor interaction, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain, which prevents it from forming a complex with SMAD4. SMAD7, an inhibitory or antagonistic SMAD (I-SMAD), acts as a negative regulator of signaling mediated by the TGF-beta superfamily of ligands, by blocking TGF-beta type 1 and activin association with the receptor as well as access to SMAD2. SMAD7 enhances muscle differentiation, playing pivotal roles in embryonic development and adult homoeostasis. SMAD7 and SMAD6 act as critical mediators for effective TGF-beta I-mediated suppression of Interleukin-1/Toll-like receptor (IL-1R/TLR) signaling through simultaneous binding to Pellino-1, an adaptor protein of interleukin-1 receptor associated kinase 1(IRAK1), via their MH2 domains. Altered expression of SMAD7 is often associated with cancer, tissue fibrosis and inflammatory diseases.


:

Pssm-ID: 199825  Cd Length: 171  Bit Score: 373.61  E-value: 9.07e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805 253 EPGDRSHWCVVAYWEEKTRVGRLYCVQEPSLDIFYDLPQGNGFCLGQLNSDNKSQLVQKVRSKIGCGIQLTREVDGVWVY 332
Cdd:cd10500    1 ERGDQSHWCVVAYWEEKTRVGRLYSVQEPSLDIFYDLPQGNGFCLGQLNSDNKSQLVQKVRSKIGYGIQLTREVDGVWVY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805 333 NRSSYPIFIKSATLDNPDSRTLLVHKVFPGFSIKAFDYEKAYSLQRPNDHEFMQQPWTGFTVQISFVKGWGQCYTRQFIS 412
Cdd:cd10500   81 NRSSYPIFIKSATLDNPDSRTLLVHKVFPGFSIKAFDYEKAYSLQRPNDHEFMQQPWTGFTVQISFVKGWGQCYTRQFIS 160

                        170
                 ....*....|.
gi 299890805 413 SCPCWLEVIFN 423
Cdd:cd10500  161 SCPCWLEVIFN 171
MH1_SMAD_7 cd10494
N-terminal Mad Homology 1 (MH1) domain in SMAD7; The MH1 is a small DNA-binding domain present ...
 60-205 1.65e-65

N-terminal Mad Homology 1 (MH1) domain in SMAD7; The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins. It binds to the major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. This MH1 belongs to SMAD7, an inhibitory SMAD (I-SMAD) or antagonistic SMAD, which acts as a negative regulator of signaling mediated by TGF-beta superfamily ligands, by blocking TGF-beta type 1 and activin association with the receptor as well as access to SMAD2. SMAD7 enhances muscle differentiation, playing pivotal roles in embryonic development and adult homoeostasis. Altered expression of SMAD7 is often associated with cancer, tissue fibrosis and inflammatory diseases.


:

Pssm-ID: 199818  Cd Length: 123  Bit Score: 205.50  E-value: 1.65e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805  60 CCLGKAVRGAKGHHHphppaagagaaggaEADLKALTHSVLKKLKERQLELLLQAVESRGGTRTACLLLPGRLDCRLGPG 139
Cdd:cd10494    2 CCLAKPPRGGGGGAA--------------EAELKALTHSVLKKLKERQLEGLLQAVESRGGARTPCLLLPARLDARLGQQ 67

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 299890805 140 apagaqpaqppsSYSLPLLLCKVFRWPDLRHSSEVKRLCCCESYGKINPELVCCNPHHLSRLCELE 205
Cdd:cd10494   68 ------------SYSLPLLLCKVFRWPDLRHSSEVKRLSCCESYGKINPELVCCNPHHLSRLCELE 121
 
Name Accession Description Interval E-value
MH2_SMAD_7 cd10500
C-terminal Mad Homology 2 (MH2) domain in SMAD7; The MH2 domain is located at the C-terminus ...
 253-423 9.07e-131

C-terminal Mad Homology 2 (MH2) domain in SMAD7; The MH2 domain is located at the C-terminus of the SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. The MH2 domain is responsible for type I receptor interaction, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain, which prevents it from forming a complex with SMAD4. SMAD7, an inhibitory or antagonistic SMAD (I-SMAD), acts as a negative regulator of signaling mediated by the TGF-beta superfamily of ligands, by blocking TGF-beta type 1 and activin association with the receptor as well as access to SMAD2. SMAD7 enhances muscle differentiation, playing pivotal roles in embryonic development and adult homoeostasis. SMAD7 and SMAD6 act as critical mediators for effective TGF-beta I-mediated suppression of Interleukin-1/Toll-like receptor (IL-1R/TLR) signaling through simultaneous binding to Pellino-1, an adaptor protein of interleukin-1 receptor associated kinase 1(IRAK1), via their MH2 domains. Altered expression of SMAD7 is often associated with cancer, tissue fibrosis and inflammatory diseases.


Pssm-ID: 199825  Cd Length: 171  Bit Score: 373.61  E-value: 9.07e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805 253 EPGDRSHWCVVAYWEEKTRVGRLYCVQEPSLDIFYDLPQGNGFCLGQLNSDNKSQLVQKVRSKIGCGIQLTREVDGVWVY 332
Cdd:cd10500    1 ERGDQSHWCVVAYWEEKTRVGRLYSVQEPSLDIFYDLPQGNGFCLGQLNSDNKSQLVQKVRSKIGYGIQLTREVDGVWVY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805 333 NRSSYPIFIKSATLDNPDSRTLLVHKVFPGFSIKAFDYEKAYSLQRPNDHEFMQQPWTGFTVQISFVKGWGQCYTRQFIS 412
Cdd:cd10500   81 NRSSYPIFIKSATLDNPDSRTLLVHKVFPGFSIKAFDYEKAYSLQRPNDHEFMQQPWTGFTVQISFVKGWGQCYTRQFIS 160

                        170
                 ....*....|.
gi 299890805 413 SCPCWLEVIFN 423
Cdd:cd10500  161 SCPCWLEVIFN 171
DWB smart00524
Domain B in dwarfin family proteins;
259-423 1.42e-77

Domain B in dwarfin family proteins;


Pssm-ID: 197770  Cd Length: 171  Bit Score: 237.98  E-value: 1.42e-77
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805   259 HWCVVAYWEEKTRVGRLYCVQEPS--LDIFYDLPQGNGFCLGQLNSDNKSQLVQKVRSKIGCGIQLTREVDGVWVYNRSS 336
Cdd:smart00524   1 SWCKIAYYELNTRVGETFKVSSPSvtVDGFTDPSDGNRFCLGQLSNVNRNEATELIRKHIGKGVQLSYENGDVWLYNRSD 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805   337 YPIFIKSATLDNPDSRTL-LVHKVFPGFSIKAFDYEKAYSLQRPNDHEFMQQPWTGF---TVQISFVKGWGQCYTRQFIS 412
Cdd:smart00524  81 SPIFVQSPYLDEPGGRTLdTVHKLPPGYSIKVFDMEKFAQLLARELAKGFEGVYDLArmcTIRISFVKGWGPDYSRQTIT 160

                          170
                   ....*....|.
gi 299890805   413 SCPCWLEVIFN 423
Cdd:smart00524 161 STPCWIEVHLN 171
MH2 pfam03166
MH2 domain; This is the MH2 (MAD homology 2) domain found at the carboxy terminus of MAD ...
 258-423 6.09e-75

MH2 domain; This is the MH2 (MAD homology 2) domain found at the carboxy terminus of MAD related proteins such as Smads. This domain is separated from the MH1 domain by a non-conserved linker region. The MH2 domain mediates interaction with a wide variety of proteins and provides specificity and selectivity to Smad function and also is critical for mediating interactions in Smad oligomers. Unlike MH1, MH2 does not bind DNA. The well-studied MH2 domain of Smad4 is composed of five alpha helices and three loops enclosing a beta sandwich. Smads are involved in the propagation of TGF-beta signals by direct association with the TGF-beta receptor kinase which phosphorylates the last two Ser of a conserved 'SSXS' motif located at the C-terminus of MH2.


Pssm-ID: 460834  Cd Length: 172  Bit Score: 231.36  E-value: 6.09e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805  258 SHWCVVAYWEEKTRVGRLYCVQEPSldIFYDLP----QGNGFCLGQLNSDNKSQLVQKVRSKIGCGIQLTREVDGVWVYN 333
Cdd:pfam03166   1 EIWCSVAYYELNTRVGEAFKVSSPN--VTVDGFtdpsDGNRFCLGLLSNVNRNEAVEKVRKHIGKGVRLSYDGGEVWIYN 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805  334 RSSYPIFIKSATLDNPDSRTL-LVHKVFPGFSIKAFDYEKAYS-LQRPNDHEFM--QQPWTGFTVQISFVKGWGQCYTRQ 409
Cdd:pfam03166  79 LSDHPVFVQSPYLNREAGRAPdTVHKVPPGESLKVFDMRKFQQlLSQELRRARLgpQDANKLCSVRISFVKGWGPDYSRQ 158

                         170
                  ....*....|....
gi 299890805  410 FISSCPCWLEVIFN 423
Cdd:pfam03166 159 DITSTPCWIEIHLH 172
MH1_SMAD_7 cd10494
N-terminal Mad Homology 1 (MH1) domain in SMAD7; The MH1 is a small DNA-binding domain present ...
 60-205 1.65e-65

N-terminal Mad Homology 1 (MH1) domain in SMAD7; The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins. It binds to the major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. This MH1 belongs to SMAD7, an inhibitory SMAD (I-SMAD) or antagonistic SMAD, which acts as a negative regulator of signaling mediated by TGF-beta superfamily ligands, by blocking TGF-beta type 1 and activin association with the receptor as well as access to SMAD2. SMAD7 enhances muscle differentiation, playing pivotal roles in embryonic development and adult homoeostasis. Altered expression of SMAD7 is often associated with cancer, tissue fibrosis and inflammatory diseases.


Pssm-ID: 199818  Cd Length: 123  Bit Score: 205.50  E-value: 1.65e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805  60 CCLGKAVRGAKGHHHphppaagagaaggaEADLKALTHSVLKKLKERQLELLLQAVESRGGTRTACLLLPGRLDCRLGPG 139
Cdd:cd10494    2 CCLAKPPRGGGGGAA--------------EAELKALTHSVLKKLKERQLEGLLQAVESRGGARTPCLLLPARLDARLGQQ 67

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 299890805 140 apagaqpaqppsSYSLPLLLCKVFRWPDLRHSSEVKRLCCCESYGKINPELVCCNPHHLSRLCELE 205
Cdd:cd10494   68 ------------SYSLPLLLCKVFRWPDLRHSSEVKRLSCCESYGKINPELVCCNPHHLSRLCELE 121
DWA smart00523
Domain A in dwarfin family proteins;
89-205 2.10e-44

Domain A in dwarfin family proteins;


Pssm-ID: 214708  Cd Length: 109  Bit Score: 150.22  E-value: 2.10e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805    89 EADLKALTHSVLKKLKERQLELLLQAVESRGGTRTACLLLPGRLDCRLGPGapagaqpaqpPSSYSLPLLLCKVFRWPDL 168
Cdd:smart00523   3 EKWAKKATESLLKKLKKKQLEELLQAVESKGGPPTRCVLIPRSLDGRLQVA----------HRKGLPHVLYCRLFRWPDL 72

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 299890805   169 RHSSEVKRLCCCESYGKINPELVCCNPHHLSRLCELE 205
Cdd:smart00523  73 QSPHELKALPTCEHAFESKSDEVCCNPYHYSRVERPE 109
MH1 pfam03165
MH1 domain; The MH1 (MAD homology 1) domain is found at the amino terminus of MAD related ...
 92-202 2.57e-37

MH1 domain; The MH1 (MAD homology 1) domain is found at the amino terminus of MAD related proteins such as Smads. This domain is separated from the MH2 domain by a non-conserved linker region. The crystal structure of the MH1 domain shows that a highly conserved 11 residue beta hairpin is used to bind the DNA consensus sequence GNCN in the major groove, shown to be vital for the transcriptional activation of target genes. Not all examples of MH1 can bind to DNA however. Smad2 cannot bind DNA and has a large insertion within the hairpin that presumably abolishes DNA binding. A basic helix (H2) in MH1 with the nuclear localization signal KKLKK has been shown to be essential for Smad3 nuclear import. Smads also use the MH1 domain to interact with transcription factors such as Jun, TFE3, Sp1, and Runx.


Pssm-ID: 460833  Cd Length: 103  Bit Score: 131.34  E-value: 2.57e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805   92 LKALTHSVLKKLKER--QLELLLQAVESRGGTRTACLLLPGRLDCRLgpgapagaqpaQPPSSYSLP-LLLCKVFRWPDL 168
Cdd:pfam03165   1 LKKAVESLLKKLKKKiqQLEELELAVESRGDPPTGCVTIPRSLDGRL-----------QVAGRKGLPhVIYCRLWRWPDL 69

                          90       100       110
                  ....*....|....*....|....*....|....
gi 299890805  169 RHSSEVKRLCCCESYGKINPELVCCNPHHLSRLC 202
Cdd:pfam03165  70 QSQHELKAIPTCETAFESKKDEVCINPYHYSRVE 103
 
Name Accession Description Interval E-value
MH2_SMAD_7 cd10500
C-terminal Mad Homology 2 (MH2) domain in SMAD7; The MH2 domain is located at the C-terminus ...
 253-423 9.07e-131

C-terminal Mad Homology 2 (MH2) domain in SMAD7; The MH2 domain is located at the C-terminus of the SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. The MH2 domain is responsible for type I receptor interaction, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain, which prevents it from forming a complex with SMAD4. SMAD7, an inhibitory or antagonistic SMAD (I-SMAD), acts as a negative regulator of signaling mediated by the TGF-beta superfamily of ligands, by blocking TGF-beta type 1 and activin association with the receptor as well as access to SMAD2. SMAD7 enhances muscle differentiation, playing pivotal roles in embryonic development and adult homoeostasis. SMAD7 and SMAD6 act as critical mediators for effective TGF-beta I-mediated suppression of Interleukin-1/Toll-like receptor (IL-1R/TLR) signaling through simultaneous binding to Pellino-1, an adaptor protein of interleukin-1 receptor associated kinase 1(IRAK1), via their MH2 domains. Altered expression of SMAD7 is often associated with cancer, tissue fibrosis and inflammatory diseases.


Pssm-ID: 199825  Cd Length: 171  Bit Score: 373.61  E-value: 9.07e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805 253 EPGDRSHWCVVAYWEEKTRVGRLYCVQEPSLDIFYDLPQGNGFCLGQLNSDNKSQLVQKVRSKIGCGIQLTREVDGVWVY 332
Cdd:cd10500    1 ERGDQSHWCVVAYWEEKTRVGRLYSVQEPSLDIFYDLPQGNGFCLGQLNSDNKSQLVQKVRSKIGYGIQLTREVDGVWVY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805 333 NRSSYPIFIKSATLDNPDSRTLLVHKVFPGFSIKAFDYEKAYSLQRPNDHEFMQQPWTGFTVQISFVKGWGQCYTRQFIS 412
Cdd:cd10500   81 NRSSYPIFIKSATLDNPDSRTLLVHKVFPGFSIKAFDYEKAYSLQRPNDHEFMQQPWTGFTVQISFVKGWGQCYTRQFIS 160

                        170
                 ....*....|.
gi 299890805 413 SCPCWLEVIFN 423
Cdd:cd10500  161 SCPCWLEVIFN 171
MH2_I-SMAD cd10496
C-terminal Mad Homology 2 (MH2) domain in Inhibitory SMADs; The MH2 domain is located at the ...
 260-423 1.41e-102

C-terminal Mad Homology 2 (MH2) domain in Inhibitory SMADs; The MH2 domain is located at the C-terminus of the SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. The MH2 domain is responsible for type I receptor interaction, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain, which prevents it from forming a complex with SMAD4. SMAD6 and SMAD7 are inhibitory SMADs (I-SMADs) that function as negative regulators of signaling mediated by the TGF-beta superfamily. SMAD6 specifically inhibits bone morphogenetic protein (BMP) type I receptor mediated signaling, while SMAD7 enhances muscle differentiation and is often associated with cancer, tissue fibrosis and inflammatory diseases.


Pssm-ID: 199821  Cd Length: 165  Bit Score: 301.58  E-value: 1.41e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805 260 WCVVAYWEEKTRVGRLYCVQEPSLDIFYDLPQGNGFCLGQLNSD-NKSQLVQKVRSKIGCGIQLTREVDGVWVYNRSSYP 338
Cdd:cd10496    1 WCTIAYWELRERVGRLYPVKQPAVNIFDDLPKGDGFCLGALNRQgNASEAVARVRSKIGLGVTLSREPDGVWIYNRSEYP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805 339 IFIKSATLDNPDSRTLLVHKVFPGFSIKAFDYEKAYSLQRPNDHEFMQQPWTGFTVQISFVKGWGQCYTRQFISSCPCWL 418
Cdd:cd10496   81 IFVNSPTLDSPPSRNLLVTKVPPGYSLKVFDYERAALLQRRDDHFSPQGPVDPNSVRISFVKGWGPNYSRQFITSCPCWL 160


                 ....*
gi 299890805 419 EVIFN 423
Cdd:cd10496  161 EILLN 165
MH2_SMAD_6 cd10499
C-terminal Mad Homology 2 (MH2) domain in SMAD6; The MH2 domain is located at the C-terminus ...
 255-423 7.00e-91

C-terminal Mad Homology 2 (MH2) domain in SMAD6; The MH2 domain is located at the C-terminus of the SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. The MH2 domain is responsible for type I receptor interaction, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain, which prevents it from forming a complex with SMAD4. SMAD6, an inhibitory or antagonistic SMAD (I-SMAD), acts as a negative regulator of signaling mediated by the TGF-beta superfamily of ligands, by competing with SMAD4 and preventing the transcription of SMAD4's gene products. SMAD6 specifically inhibits bone morphogenetic protein (BMP) type I receptor mediated signaling. SMAD6 and SMAD7 act as critical mediators for effective TGF-beta I-mediated suppression of Interleukin-1/Toll-like receptor (IL-1R/TLR) signaling through simultaneous binding to Pellino-1, an adaptor protein of interleukin-1 receptor associated kinase 1 (IRAK1), via their MH2 domains.


Pssm-ID: 199824  Cd Length: 174  Bit Score: 272.08  E-value: 7.00e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805 255 GDRSHWCVVAYWEEKTRVGRLYCVQEPSLDIFYDLPQGNGFCLGQLNSDNKSQLVQKVRSKIGCGIQLTREVDGVWVYNR 334
Cdd:cd10499    5 TKRSHWCSVAYWEHRTRVGRLYAVYDQSVSIFYDLPQGSGFCLGQLNLEQRSESVRRTRSKIGYGILLSKEPDGVWAYNR 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805 335 SSYPIFIKSATLDNPDSRTLLVHKVFPGFSIKAFDYEKAYSLQRPNDHEFMQQPWTGFTVQISFVKGWGQCYTRQFISSC 414
Cdd:cd10499   85 SEHPIFVNSPTLDIPGSRTLVVRKVPPGYSIKVFDYERSCLLQHTAEPELADGPYDPNSVRISFAKGWGPCYSRQFITSC 164


                 ....*....
gi 299890805 415 PCWLEVIFN 423
Cdd:cd10499  165 PCWLEILLN 173
DWB smart00524
Domain B in dwarfin family proteins;
259-423 1.42e-77

Domain B in dwarfin family proteins;


Pssm-ID: 197770  Cd Length: 171  Bit Score: 237.98  E-value: 1.42e-77
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805   259 HWCVVAYWEEKTRVGRLYCVQEPS--LDIFYDLPQGNGFCLGQLNSDNKSQLVQKVRSKIGCGIQLTREVDGVWVYNRSS 336
Cdd:smart00524   1 SWCKIAYYELNTRVGETFKVSSPSvtVDGFTDPSDGNRFCLGQLSNVNRNEATELIRKHIGKGVQLSYENGDVWLYNRSD 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805   337 YPIFIKSATLDNPDSRTL-LVHKVFPGFSIKAFDYEKAYSLQRPNDHEFMQQPWTGF---TVQISFVKGWGQCYTRQFIS 412
Cdd:smart00524  81 SPIFVQSPYLDEPGGRTLdTVHKLPPGYSIKVFDMEKFAQLLARELAKGFEGVYDLArmcTIRISFVKGWGPDYSRQTIT 160

                          170
                   ....*....|.
gi 299890805   413 SCPCWLEVIFN 423
Cdd:smart00524 161 STPCWIEVHLN 171
MH2 pfam03166
MH2 domain; This is the MH2 (MAD homology 2) domain found at the carboxy terminus of MAD ...
 258-423 6.09e-75

MH2 domain; This is the MH2 (MAD homology 2) domain found at the carboxy terminus of MAD related proteins such as Smads. This domain is separated from the MH1 domain by a non-conserved linker region. The MH2 domain mediates interaction with a wide variety of proteins and provides specificity and selectivity to Smad function and also is critical for mediating interactions in Smad oligomers. Unlike MH1, MH2 does not bind DNA. The well-studied MH2 domain of Smad4 is composed of five alpha helices and three loops enclosing a beta sandwich. Smads are involved in the propagation of TGF-beta signals by direct association with the TGF-beta receptor kinase which phosphorylates the last two Ser of a conserved 'SSXS' motif located at the C-terminus of MH2.


Pssm-ID: 460834  Cd Length: 172  Bit Score: 231.36  E-value: 6.09e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805  258 SHWCVVAYWEEKTRVGRLYCVQEPSldIFYDLP----QGNGFCLGQLNSDNKSQLVQKVRSKIGCGIQLTREVDGVWVYN 333
Cdd:pfam03166   1 EIWCSVAYYELNTRVGEAFKVSSPN--VTVDGFtdpsDGNRFCLGLLSNVNRNEAVEKVRKHIGKGVRLSYDGGEVWIYN 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805  334 RSSYPIFIKSATLDNPDSRTL-LVHKVFPGFSIKAFDYEKAYS-LQRPNDHEFM--QQPWTGFTVQISFVKGWGQCYTRQ 409
Cdd:pfam03166  79 LSDHPVFVQSPYLNREAGRAPdTVHKVPPGESLKVFDMRKFQQlLSQELRRARLgpQDANKLCSVRISFVKGWGPDYSRQ 158

                         170
                  ....*....|....
gi 299890805  410 FISSCPCWLEVIFN 423
Cdd:pfam03166 159 DITSTPCWIEIHLH 172
MH1_SMAD_7 cd10494
N-terminal Mad Homology 1 (MH1) domain in SMAD7; The MH1 is a small DNA-binding domain present ...
 60-205 1.65e-65

N-terminal Mad Homology 1 (MH1) domain in SMAD7; The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins. It binds to the major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. This MH1 belongs to SMAD7, an inhibitory SMAD (I-SMAD) or antagonistic SMAD, which acts as a negative regulator of signaling mediated by TGF-beta superfamily ligands, by blocking TGF-beta type 1 and activin association with the receptor as well as access to SMAD2. SMAD7 enhances muscle differentiation, playing pivotal roles in embryonic development and adult homoeostasis. Altered expression of SMAD7 is often associated with cancer, tissue fibrosis and inflammatory diseases.


Pssm-ID: 199818  Cd Length: 123  Bit Score: 205.50  E-value: 1.65e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805  60 CCLGKAVRGAKGHHHphppaagagaaggaEADLKALTHSVLKKLKERQLELLLQAVESRGGTRTACLLLPGRLDCRLGPG 139
Cdd:cd10494    2 CCLAKPPRGGGGGAA--------------EAELKALTHSVLKKLKERQLEGLLQAVESRGGARTPCLLLPARLDARLGQQ 67

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 299890805 140 apagaqpaqppsSYSLPLLLCKVFRWPDLRHSSEVKRLCCCESYGKINPELVCCNPHHLSRLCELE 205
Cdd:cd10494   68 ------------SYSLPLLLCKVFRWPDLRHSSEVKRLSCCESYGKINPELVCCNPHHLSRLCELE 121
MH2 cd00050
C-terminal Mad Homology 2 (MH2) domain; The MH2 domain is found in the SMAD (small mothers ...
 260-423 1.90e-58

C-terminal Mad Homology 2 (MH2) domain; The MH2 domain is found in the SMAD (small mothers against decapentaplegic) family of proteins and is responsible for type I receptor interactions, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain which prevents it from forming a complex with SMAD4. The MH2 domain is multifunctional and provides SMADs with their specificity and selectivity, as well as transcriptional activity. Several transcriptional co-activators and repressors have also been reported to regulate SMAD signaling by interacting with the MH2 domain. Mutations in the MH2 domains of SMAD2 and especially SMAD4 have been detected in colorectal and other human cancers.


Pssm-ID: 199819  Cd Length: 170  Bit Score: 188.97  E-value: 1.90e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805 260 WCVVAYWEEKTRVGRLYCVQEPS--LDIFYDLPQGNGFCLGQLNSDNKSQLVQKVRSKIGCGIQLTREVDGVWVYNRSSY 337
Cdd:cd00050    1 WCSIAYYELNTRVGELFHVYSPSvaVDGFTDPSNGDRFCLGQLSNVNRNETIERTRRHIGKGVHLYYVGGEVWAECLSDH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805 338 PIFIKSATLDNPDSRT-LLVHKVFPGFSIKAFDYEKAYSLQRpndhefmQQPWTGF----------TVQISFVKGWGQCY 406
Cdd:cd00050   81 AIFVQSRNLDYPHGRHpLTVCKIPPGCSIKVFDNQEFAQLLH-------QSVNTGFegvyeltkmcTIRMSFVKGWGPEY 153

                        170
                 ....*....|....*..
gi 299890805 407 TRQFISSCPCWLEVIFN 423
Cdd:cd00050  154 HRQDITSTPCWIEIHLH 170
DWA smart00523
Domain A in dwarfin family proteins;
89-205 2.10e-44

Domain A in dwarfin family proteins;


Pssm-ID: 214708  Cd Length: 109  Bit Score: 150.22  E-value: 2.10e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805    89 EADLKALTHSVLKKLKERQLELLLQAVESRGGTRTACLLLPGRLDCRLGPGapagaqpaqpPSSYSLPLLLCKVFRWPDL 168
Cdd:smart00523   3 EKWAKKATESLLKKLKKKQLEELLQAVESKGGPPTRCVLIPRSLDGRLQVA----------HRKGLPHVLYCRLFRWPDL 72

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 299890805   169 RHSSEVKRLCCCESYGKINPELVCCNPHHLSRLCELE 205
Cdd:smart00523  73 QSPHELKALPTCEHAFESKSDEVCCNPYHYSRVERPE 109
MH1_SMAD_6_7 cd10489
N-terminal Mad Homology 1 (MH1) domain in SMAD6 and SMAD7; The MH1 is a small DNA-binding ...
 89-205 9.55e-39

N-terminal Mad Homology 1 (MH1) domain in SMAD6 and SMAD7; The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. MH1 binds to the DNA major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. This MH1 domain is found in SMAD6 and SMAD7, both inhibitory SMADs (I-SMADs) and negative regulators of signaling mediated by TGF-beta superfamily. SMAD6 specifically inhibits bone morphogenetic protein (BMP) type I receptor mediated signaling while SMAD7 enhances muscle differentiation and is often associated with cancer, tissue fibrosis and inflammatory diseases.


Pssm-ID: 199813  Cd Length: 119  Bit Score: 135.59  E-value: 9.55e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805  89 EADLKALTHSVLKKLKERQLELLLQAVESRGGTRTACLLLPgrldCRLGPGAPagaqpaqppssYSLPLLLCKVFRWPDL 168
Cdd:cd10489   20 ERDLRAAFHALLKRLKEKQLELLLQAVESRGGDYLACVLLP----RRDPRSMP-----------QDPHVLCCQLFRWPDL 84

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 299890805 169 RHSSEVKRLCCCESYGKinPELVCCNPHHLSRLCELE 205
Cdd:cd10489   85 RHSSELKRLPTCESAKD--PVYVCCNPYHWSRLCRPE 119
MH1 pfam03165
MH1 domain; The MH1 (MAD homology 1) domain is found at the amino terminus of MAD related ...
 92-202 2.57e-37

MH1 domain; The MH1 (MAD homology 1) domain is found at the amino terminus of MAD related proteins such as Smads. This domain is separated from the MH2 domain by a non-conserved linker region. The crystal structure of the MH1 domain shows that a highly conserved 11 residue beta hairpin is used to bind the DNA consensus sequence GNCN in the major groove, shown to be vital for the transcriptional activation of target genes. Not all examples of MH1 can bind to DNA however. Smad2 cannot bind DNA and has a large insertion within the hairpin that presumably abolishes DNA binding. A basic helix (H2) in MH1 with the nuclear localization signal KKLKK has been shown to be essential for Smad3 nuclear import. Smads also use the MH1 domain to interact with transcription factors such as Jun, TFE3, Sp1, and Runx.


Pssm-ID: 460833  Cd Length: 103  Bit Score: 131.34  E-value: 2.57e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805   92 LKALTHSVLKKLKER--QLELLLQAVESRGGTRTACLLLPGRLDCRLgpgapagaqpaQPPSSYSLP-LLLCKVFRWPDL 168
Cdd:pfam03165   1 LKKAVESLLKKLKKKiqQLEELELAVESRGDPPTGCVTIPRSLDGRL-----------QVAGRKGLPhVIYCRLWRWPDL 69

                          90       100       110
                  ....*....|....*....|....*....|....
gi 299890805  169 RHSSEVKRLCCCESYGKINPELVCCNPHHLSRLC 202
Cdd:pfam03165  70 QSQHELKAIPTCETAFESKKDEVCINPYHYSRVE 103
MH1_SMAD_6 cd10493
N-terminal Mad Homology 1 (MH1) domain in SMAD6; The MH1 is a small DNA-binding domain present ...
 89-205 2.54e-36

N-terminal Mad Homology 1 (MH1) domain in SMAD6; The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. MH1 binds to the DNA major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. This MH1 belongs to SMAD6, an inhibitory SMAD (I-SMAD) or antagonistic SMAD, which acts as a negative regulator of signaling mediated by TGF-beta superfamily ligands, by competing with SMAD4 and preventing the transcription of SMAD4's gene products. SMAD6 specifically inhibits bone morphogenetic protein (BMP) type I receptor mediated signaling.


Pssm-ID: 199817  Cd Length: 113  Bit Score: 129.12  E-value: 2.54e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805  89 EADLKALTHSVLKKLKERQLELLLQAVESRGGTRTACLLLPgRLDCRLGpgapagAQPAQPPssyslpLLLCKVFRWPDL 168
Cdd:cd10493   10 EQELKSVTYALLKRLKERSLDVLLEAVESRGGLPSGCVMVP-RTELRLG------GRRVPPQ------LLLCRLFRWPDL 76

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 299890805 169 RHSSEVKRLCCCESYGKINPELVCCNPHHLSRLCELE 205
Cdd:cd10493   77 QHPAQLKALCHCQSFGAQDGPTVCCNPYHYSRLCGPE 113
MH1 cd00049
N-terminal Mad Homology 1 (MH1) domain; The MH1 is a small DNA-binding domain present in SMAD ...
 89-202 1.50e-26

N-terminal Mad Homology 1 (MH1) domain; The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. MH1 binds to the DNA major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. Receptor-regulated SMAD proteins (R-SMADs, including SMAD1, SMAD2, SMAD3, SMAD5, and SMAD9) are activated by phosphorylation by transforming growth factor (TGF)-beta type I receptors. The active R-SMAD associates with a common mediator SMAD (Co-SMAD or SMAD4) and other cofactors, which together translocate to the nucleus to regulate gene expression. The inhibitory or antagonistic SMADs (I-SMADs, including SMAD6 and SMAD7) negatively regulate TGF-beta signaling by competing with R-SMADs for type I receptor or Co-SMADs. MH1 domains of R-SMAD and SMAD4 contain a nuclear localization signal as well as DNA-binding activity. The activated R-SMAD/SMAD4 complex then binds with very low affinity to a DNA sequence CAGAC called SMAD-binding element (SBE) via the MH1 domain.


Pssm-ID: 199811  Cd Length: 121  Bit Score: 103.05  E-value: 1.50e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805  89 EADLKALTHSVLKKLKER-QLELLLQAVESRGGTRTACLLLPGRLDCRLGPGAPAGaqpaqPPSsyslpLLLCKVFRWPD 167
Cdd:cd00049   16 EKWAKKAVKSLVKKLKEKkQLDSLEKAITTQGGVPSKCVTIPRSLDGRLQVAHRKG-----LPH-----VIYCRLWRWPD 85

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 299890805 168 LRHSSEVKRLCCCESYGKINPELVCCNPHHLSRLC 202
Cdd:cd00049   86 LHSHHELKALELCQFAFNMKKDEVCVNPYHYQRVE 120
MH2_R-SMAD cd10495
C-terminal Mad Homology 2 (MH2) domain in receptor regulated SMADs; The MH2 domain is located ...
 260-420 1.60e-25

C-terminal Mad Homology 2 (MH2) domain in receptor regulated SMADs; The MH2 domain is located at the C-terminus of the SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. The MH2 domain is responsible for type I receptor interaction, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain. Receptor regulated SMADs (R-SMADs) include SMAD1, SMAD2, SMAD3, SMAD5 and SMAD9. SMAD1 plays an essential role in bone development and postnatal bone formation through activation by bone morphogenetic protein (BMP) type 1 receptor kinase. SMAD2 regulates multiple cellular processes, such as cell proliferation, apoptosis and differentiation, while SMAD3 modulates signals of activin and TGF-beta. SMAD5 is involved in BMP signal modulation, possibly playing a role in the pathway involving inhibition of hematopoietic progenitor cells by TGF-beta. SMAD9 (also known as SMAD8) can mediate the differentiation of mesenchymal stem cells into tendon-like cells by inhibiting the osteogenic pathway.


Pssm-ID: 199820  Cd Length: 182  Bit Score: 102.46  E-value: 1.60e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805 260 WCVVAYWEEKTRVGRLYCVQEPSL--DIFYDlPQGNG--FCLGQLNSDNKSQLVQKVRSKIGCGIQLTREVDGVWVYNRS 335
Cdd:cd10495    1 WCSISYYELNSRVGEQFKASNPSIivDGFTD-PSNNSdrFCLGLLSNVNRNATIENTRRHIGRGVHLFYVGGEVYAECLS 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805 336 SYPIFIKSATLD---NPDSRTllVHKVFPGFSIKAFD---------------YEKAYSLQRpndhefMqqpwtgFTVQIS 397
Cdd:cd10495   80 DSAIFVQSRNCNlrhGFHPAT--VCKIPPGCSLKIFNnqsfaqlleqsvnrgFEAVYELTK------M------CTIRIS 145

                        170       180
                 ....*....|....*....|...
gi 299890805 398 FVKGWGQCYTRQFISSCPCWLEV 420
Cdd:cd10495  146 FVKGWGAEYHRQDVTSTPCWIEI 168
MH2_SMAD_4 cd10498
C-terminal Mad Homology 2 (MH2) domain in SMAD4; The MH2 domain is located at the C-terminus ...
 259-420 2.61e-24

C-terminal Mad Homology 2 (MH2) domain in SMAD4; The MH2 domain is located at the C-terminus of the SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. The MH2 domain is responsible for type I receptor interaction, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain. SMAD4, which belongs to the Dwarfin family of proteins, is involved in many cell functions such as differentiation, apoptosis, gastrulation, embryonic development and the cell cycle. SMAD4 binds receptor regulated SMADs (R-SMADs) such as SMAD1 or SMAD2, and forms an oligomeric complex that binds to DNA and serves as a transcription factor. SMAD4 is often mutated in several cancers, such as multiploid colorectal cancer, cervical cancer and pancreatic carcinoma, as well as in juvenile polyposis syndrome.


Pssm-ID: 199823  Cd Length: 222  Bit Score: 100.24  E-value: 2.61e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805 259 HWCVVAYWEEKTRVGRLYCVQEP----SLDIFYDLPQGNGFCLGQLNSDNKSQLVQKVRSKIGCGIQLTREVDG-VWVYN 333
Cdd:cd10498    3 YWCSIAYFELDTQVGETFKVPSScptvTVDGYVDPSGGNRFCLGQLSNVHRTEASERARLHIGKGVQLDCKGEGdVWLRC 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805 334 RSSYPIFIKSATLDNPDSRT--LLVHKVFPGFSIKAFDYEKAYSLQR----------------------PNDHEFMQQPW 389
Cdd:cd10498   83 LSDHSVFVQSYYLDREAGRApgDAVHKIYPSAYIKVFDLRQCHRQMQqqaataqaaaaaqaaavagnipGPGSVGGIAPA 162

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 299890805 390 TGFT---------------VQISFVKGWGQCYTRQFISSCPCWLEV 420
Cdd:cd10498  163 ISLSaaagigvddlrrlciLRMSFVKGWGPDYPRQSIKETPCWIEI 208
MH2_SMAD_2_3 cd10985
C-terminal Mad Homology 2 (MH2) domain in SMAD2 and SMAD3; The MH2 domain is located at the ...
 260-423 4.01e-22

C-terminal Mad Homology 2 (MH2) domain in SMAD2 and SMAD3; The MH2 domain is located at the C-terminus of the SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. The MH2 domain is responsible for type I receptor interaction, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain. SMAD2 and SMAD3 are receptor regulated SMADs (R-SMADs). SMAD2 regulates multiple cellular processes, such as cell proliferation, apoptosis and differentiation, while SMAD3 modulates signals of activin and TGF-beta.


Pssm-ID: 199826  Cd Length: 191  Bit Score: 93.07  E-value: 4.01e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805 260 WCVVAYWEEKTRVGRLYCVQEPSL--DIFYDLPQGNGFCLGQLNSDNKSQLVQKVRSKIGCGIQLTREVDGVWVYNRSSY 337
Cdd:cd10985    9 WCSISYYEMNTRVGETFHASQPSLtvDGFTDPSNSERFCLGLLSNVNRNPQVELTRRHIGKGVRLYYIGGEVFAECLSDS 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805 338 PIFIKSATLDN-----PDSrtllVHKVFPGFSIKAF---DYEKAYSLQRPNDHEFMQQPWTGFTVQISFVKGWGQCYTRQ 409
Cdd:cd10985   89 AIFVQSPNCNQrygwhPAT----VCKIPPGCNLKIFnnqEFAALLSQSVNQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQ 164

                        170
                 ....*....|....
gi 299890805 410 FISSCPCWLEVIFN 423
Cdd:cd10985  165 TVTSTPCWIELHLN 178
MH2_SMAD_1_5_9 cd10497
C-terminal Mad Homology 2 (MH2) domain in SMAD1, SMAD5 and SMAD9; The MH2 domain is located at ...
 259-423 4.46e-20

C-terminal Mad Homology 2 (MH2) domain in SMAD1, SMAD5 and SMAD9; The MH2 domain is located at the C-terminus of the SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. The MH2 domain is responsible for type I receptor interaction, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain, which prevents it from forming a complex with SMAD4. SMAD1, SMAD5 and SMAD9 (also known as SMAD8), are receptor regulated SMADs (R-SMADs). SMAD1 plays an essential role in bone development and postnatal bone formation through activation by bone morphogenetic protein (BMP) type 1 receptor kinase. SMAD5 is involved in BMP signal modulation and may also play a role in the pathway involving inhibition of hematopoietic progenitor cells by TGF-beta. SMAD9 mediates the differentiation of mesenchymal stem cells (MSCs) into tendon-like cells by inhibiting the osteogenic pathway.


Pssm-ID: 199822  Cd Length: 201  Bit Score: 87.63  E-value: 4.46e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805 259 HWCVVAYWEEKTRVGRLYCVQEPSL--DIFYDlPQGNG--FCLGQLNSDNKSQLVQKVRSKIGCGIQLTREVDGVWVYNR 334
Cdd:cd10497    6 YWCSIAYYELNNRVGEAFHASSTSIivDGFTD-PSNNSdrFCLGLLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805 335 SSYPIFIKSATLD-----NPDSrtllVHKVFPGFSIKAFD-YEKAYSLQRPNDHEF--MQQPWTGFTVQISFVKGWGQCY 406
Cdd:cd10497   85 SDSSIFVQSRNCNyhhgfHPTT----VCKIPPGCSLKIFNnQEFAQLLSQSVNHGFeaVYELTKMCTIRMSFVKGWGAEY 160

                        170
                 ....*....|....*..
gi 299890805 407 TRQFISSCPCWLEVIFN 423
Cdd:cd10497  161 HRQDVTSTPCWIEIHLH 177
MH1_R-SMAD cd10488
N-terminal Mad Homology 1 (MH1) domain of receptor regulated SMADs; The MH1 is a small ...
 98-201 2.35e-11

N-terminal Mad Homology 1 (MH1) domain of receptor regulated SMADs; The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. It binds to the major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. This MH1 domain is found in all receptor regulated SMADs (R-SMADs) including SMAD1, SMAD2, SMAD3, SMAD5 and SMAD9. SMAD1 plays an essential role in bone development and postnatal bone formation through activation by bone morphogenetic protein (BMP) type 1 receptor kinase. SMAD2 regulates multiple cellular processes, such as cell proliferation, apoptosis and differentiation, while SMAD3 modulates signals of activin and TGF-beta. SMAD4, a common mediator SMAD (co-SMAD) binds R-SMADs, forming an oligomeric complex that binds to DNA and serves as a transcription factor. SMAD5 is involved in bone morphogenetic proteins (BMP) signal modulation, possibly playing a role in the pathway involving inhibition of hematopoietic progenitor cells by TGF-beta. SMAD9 (also known as SMAD8) can mediate the differentiation of mesenchymal stem cells (MSCs) into tendon-like cells by inhibiting the osteogenic pathway


Pssm-ID: 199812  Cd Length: 123  Bit Score: 60.67  E-value: 2.35e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805  98 SVLKKLKER-QLELLLQAVeSRGGTRTACLLLPGRLDCRLGPGAPAGaqpaqppssysLP-LLLCKVFRWPDLRHSSEVK 175
Cdd:cd10488   28 SLVKKLKKKgQLEELEKAI-STQNVNTRCVTIPRSLDGRLQVSHRKG-----------LPhVIYCRLWRWPDLQSHHELK 95

                         90       100
                 ....*....|....*....|....*.
gi 299890805 176 RLCCCESYGKINPELVCCNPHHLSRL 201
Cdd:cd10488   96 PLELCEFAFNMKKEEVCINPYHYKRV 121
MH1_SMAD_4 cd10492
N-terminal Mad Homology 1 (MH1) domain in SMAD4; The MH1 is a small DNA-binding domain present ...
 98-200 3.97e-10

N-terminal Mad Homology 1 (MH1) domain in SMAD4; The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. MH1 binds to the DNA major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. This MH1 belongs to SMAD4, a common mediator SMAD (co-SMAD), which belongs to the Dwarfin family of proteins and is involved in many cell functions such as differentiation, apoptosis, gastrulation, embryonic development and cell cycle. SMAD4 binds receptor regulated SMADs (R-SMADs) such as SMAD1 or SMAD2, and forms an oligomeric complex that binds to DNA and serves as a transcription factor. SMAD4 is often mutated in several cancers, such as multiploid colorectal cancer and pancreatic carcinoma, as well as in juvenile polyposis syndrome (JPS).


Pssm-ID: 199816  Cd Length: 125  Bit Score: 57.46  E-value: 3.97e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805  98 SVLKKLKERQLEL--LLQAVESRGGTRTACLLLPGRLDCRLGPGAPAGAqpaqPPSSYSlplllcKVFRWPDLrHSSEVK 175
Cdd:cd10492   29 SLVKKLKDKRDELdsLITAITSNGAHPSKCVTIQRTLDGRLQVAGRKGF----PHVIYA------RIWRWPDL-HKNELK 97

                         90       100
                 ....*....|....*....|....*
gi 299890805 176 RLCCCESYGKINPELVCCNPHHLSR 200
Cdd:cd10492   98 HVKFCQYAFDLKCDSVCVNPYHYER 122
MH1_SMAD_2_3 cd10491
N-terminal Mad Homology 1 (MH1) domain in SMAD2 and SMAD3; The MH1 is a small DNA-binding ...
 98-201 8.15e-10

N-terminal Mad Homology 1 (MH1) domain in SMAD2 and SMAD3; The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. MH1 binds to the DNA major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. This MH1 is found in SMAD2 as well as SMAD3. SMAD2 mediates the signal of the transforming growth factor (TGF)-beta, and thereby regulates multiple cellular processes, such as cell proliferation, apoptosis, and differentiation. It plays a role in the transmission of extracellular signals from ligands of the TGF-beta superfamily growth factors into the cell nucleus. SMAD3 modulates signals of activin and TGF-beta. It binds SMAD4, enabling its transmigration into the nucleus where it forms complexes with other proteins and acts as a transcription factor. Increased SMAD3 activity has been implicated in the pathogenesis of scleroderma.


Pssm-ID: 199815  Cd Length: 124  Bit Score: 56.38  E-value: 8.15e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805  98 SVLKKLKER-QLELLLQAVESRGGTrTACLLLPGRLDCRLgpgapagaqpaQPPSSYSLP-LLLCKVFRWPDLRHSSEVK 175
Cdd:cd10491   29 SLVKKLKKTgGLDELEKAITTQNSN-TKCITIPRSLDGRL-----------QVSHRKGLPhVIYCRLWRWPDLQSHHELR 96

                         90       100
                 ....*....|....*....|....*.
gi 299890805 176 RLCCCESYGKINPELVCCNPHHLSRL 201
Cdd:cd10491   97 AIETCEYAFNLKKDEVCVNPYHYQRV 122
MH1_SMAD_1_5_9 cd10490
N-terminal Mad Homology 1 (MH1) domain in SMAD1, SMAD5 and SMAD9 (also known as SMAD8); The ...
 98-201 1.24e-09

N-terminal Mad Homology 1 (MH1) domain in SMAD1, SMAD5 and SMAD9 (also known as SMAD8); The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. MH1 binds to the DNA major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. This MH1 domain is found in SMAD1, SMAD5 and SMAD9, all closely related receptor regulated SMADs (R-SMADs). SMAD1 plays an essential role in bone development and postnatal bone formation through activation by bone morphogenetic protein (BMP) type 1 receptor kinase. SMAD5 is involved in bone morphogenetic proteins (BMP) signal modulation and may also play a role in the pathway involving inhibition of hematopoietic progenitor cells by TGF-beta. SMAD9 mediates the differentiation of mesenchymal stem cells (MSCs) into tendon-like cells by inhibiting the osteogenic pathway.


Pssm-ID: 199814  Cd Length: 124  Bit Score: 55.97  E-value: 1.24e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299890805  98 SVLKKLKERQ--LELLLQAVeSRGGTRTACLLLPGRLDCRLgpgapagaqpaQPPSSYSLP-LLLCKVFRWPDLRHSSEV 174
Cdd:cd10490   28 SLVKKLKKKKgaLEELEKAL-SCPGQPSKCVTIPRSLDGRL-----------QVSHRKGLPhVIYCRVWRWPDLQSHHEL 95

                         90       100
                 ....*....|....*....|....*..
gi 299890805 175 KRLCCCESYGKINPELVCCNPHHLSRL 201
Cdd:cd10490   96 KPLECCEFPFGSKQKEVCINPYHYKRV 122
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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