|
Name |
Accession |
Description |
Interval |
E-value |
| Filament |
pfam00038 |
Intermediate filament protein; |
83-396 |
1.52e-120 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 354.23 E-value: 1.52e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 83 NEKVTMQNLNDRLASYLENVRALEEANADLEQKIKGWYEKFGPGSCRgldhDYSRYFPIIDELKNQIISATTSNAHVVLQ 162
Cdd:pfam00038 1 NEKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKKGAEPSR----LYSLYEKEIEDLRRQLDTLTVERARLQLE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 163 NDNARLTADDFRLKFENELALHQSVEADINGLRRVLDELTLCRTDLEIQLETLSEELAYLKKNHEEEMKALQC-AAGGNV 241
Cdd:pfam00038 77 LDNLRLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAqVSDTQV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 242 NVEMNAAPGVDLTVLLNNMRAEYEALAEQNRRDAEAWFNEKSASLQQQISDDAGATTSARNELTEMKRTLQTLEIELQSL 321
Cdd:pfam00038 157 NVEMDAARKLDLTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSL 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 119581082 322 LATKHSLECSLTETESNYCAQLAQIQAQIGALEEQLHQVRTETEGQKLEYEQLLDIKVHLEKEIETYCLLIDGED 396
Cdd:pfam00038 237 KKQKASLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEE 311
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
142-386 |
3.99e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 3.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 142 IDELKNQIISATTSNAHVVLQNDNARLTADDFRLKFENELALHQSVEADINGLRRVLDELTLCRTDLEIQLETLSEELAY 221
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 222 LKKNHEEEMKALQCAAGGNVNVEMNAApgvDLTVLLNNMRAEYEALAEQNRRDAEAWFNEKSASLQQQisddaGATTSAR 301
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELE---EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL-----RAAAELA 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 302 NELTEMKRTLQTLEIELQSLLATKHSLEcsltetesnycAQLAQIQAQIGALEEQLHQVRTETEGQKLEYEQLLDIKVHL 381
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEELEELE-----------EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468
|
....*
gi 119581082 382 EKEIE 386
Cdd:COG1196 469 LEEAA 473
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
142-376 |
1.85e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 1.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 142 IDELKNQIISATTSNAHVVLQNDNARLTADDFRLKFENELALHQSVEADINGLRRVLDELTLCRTDLEIQLETLSEELAY 221
Cdd:TIGR02168 693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 222 L---KKNHEEEMKALQcaagGNVNVEMNAApgVDLTVLLNNMRAEYEAL----------AEQNRRDAEAWfnEKSAS-LQ 287
Cdd:TIGR02168 773 AeeeLAEAEAEIEELE----AQIEQLKEEL--KALREALDELRAELTLLneeaanlrerLESLERRIAAT--ERRLEdLE 844
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 288 QQISDDAGATTSARNELTEMKRTLQTLEIELQSLLATKHSLECSLTETESNYCAQLAQIQ----------AQIGALEEQL 357
Cdd:TIGR02168 845 EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELReleskrselrRELEELREKL 924
|
250
....*....|....*....
gi 119581082 358 HQVRTETEGQKLEYEQLLD 376
Cdd:TIGR02168 925 AQLELRLEGLEVRIDNLQE 943
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
87-387 |
4.28e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 39.64 E-value: 4.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 87 TMQNLNDRLASY---LENVRALEEANADLEQKIKGWYEKFgpgscrgldhdysryfpiiDELKNQIISATTSNAHVVLQN 163
Cdd:PRK02224 235 TRDEADEVLEEHeerREELETLEAEIEDLRETIAETERER-------------------EELAEEVRDLRERLEELEEER 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 164 DNARLTADDFRLKFENELALHQSVEADINGLRRVLDELTLCRTDLEIQLETLSEELaylkKNHEEEMKALQCAAGgNVNV 243
Cdd:PRK02224 296 DDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDA----DDLEERAEELREEAA-ELES 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 244 EMNAApgvdlTVLLNNMRAEYEALAEQnRRDAEAWFN------EKSASLQQQISDDAGAttsARNELTEMKRTLQTLE-- 315
Cdd:PRK02224 371 ELEEA-----REAVEDRREEIEELEEE-IEELRERFGdapvdlGNAEDFLEELREERDE---LREREAELEATLRTARer 441
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 119581082 316 -IELQSLLATKHSLECSLTETESNYCAQLAQIQAQIGALEEQLHQVRTETEGQKLEYEQLLDIkVHLEKEIET 387
Cdd:PRK02224 442 vEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDL-VEAEDRIER 513
|
|
| SPEC |
cd00176 |
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ... |
178-375 |
9.36e-03 |
|
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Pssm-ID: 238103 [Multi-domain] Cd Length: 213 Bit Score: 37.43 E-value: 9.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 178 ENELALHQSVEADINGLRRVLDeltlcrtDLEIQLETLSEELAYLKKNHEEEMKALqcaaggNVNVEMNAAPGVDLTVLL 257
Cdd:cd00176 36 EALLKKHEALEAELAAHEERVE-------ALNELGEQLIEEGHPDAEEIQERLEEL------NQRWEELRELAEERRQRL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 258 NNMRAEYEALAEQnrRDAEAWFNEKSASLQQQ-ISDDAGATTSARNELTEMKRTLQTLEIELQSLLATKHSLEcsltetE 336
Cdd:cd00176 103 EEALDLQQFFRDA--DDLEQWLEEKEAALASEdLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELL------E 174
|
170 180 190
....*....|....*....|....*....|....*....
gi 119581082 337 SNYCAQLAQIQAQIGALEEQLHQVRTETEGQKLEYEQLL 375
Cdd:cd00176 175 EGHPDADEEIEEKLEELNERWEELLELAEERQKKLEEAL 213
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| Filament |
pfam00038 |
Intermediate filament protein; |
83-396 |
1.52e-120 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 354.23 E-value: 1.52e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 83 NEKVTMQNLNDRLASYLENVRALEEANADLEQKIKGWYEKFGPGSCRgldhDYSRYFPIIDELKNQIISATTSNAHVVLQ 162
Cdd:pfam00038 1 NEKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKKGAEPSR----LYSLYEKEIEDLRRQLDTLTVERARLQLE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 163 NDNARLTADDFRLKFENELALHQSVEADINGLRRVLDELTLCRTDLEIQLETLSEELAYLKKNHEEEMKALQC-AAGGNV 241
Cdd:pfam00038 77 LDNLRLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAqVSDTQV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 242 NVEMNAAPGVDLTVLLNNMRAEYEALAEQNRRDAEAWFNEKSASLQQQISDDAGATTSARNELTEMKRTLQTLEIELQSL 321
Cdd:pfam00038 157 NVEMDAARKLDLTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSL 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 119581082 322 LATKHSLECSLTETESNYCAQLAQIQAQIGALEEQLHQVRTETEGQKLEYEQLLDIKVHLEKEIETYCLLIDGED 396
Cdd:pfam00038 237 KKQKASLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEE 311
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
142-386 |
3.99e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 3.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 142 IDELKNQIISATTSNAHVVLQNDNARLTADDFRLKFENELALHQSVEADINGLRRVLDELTLCRTDLEIQLETLSEELAY 221
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 222 LKKNHEEEMKALQCAAGGNVNVEMNAApgvDLTVLLNNMRAEYEALAEQNRRDAEAWFNEKSASLQQQisddaGATTSAR 301
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELE---EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL-----RAAAELA 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 302 NELTEMKRTLQTLEIELQSLLATKHSLEcsltetesnycAQLAQIQAQIGALEEQLHQVRTETEGQKLEYEQLLDIKVHL 381
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEELEELE-----------EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468
|
....*
gi 119581082 382 EKEIE 386
Cdd:COG1196 469 LEEAA 473
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
142-376 |
1.85e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 1.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 142 IDELKNQIISATTSNAHVVLQNDNARLTADDFRLKFENELALHQSVEADINGLRRVLDELTLCRTDLEIQLETLSEELAY 221
Cdd:TIGR02168 693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 222 L---KKNHEEEMKALQcaagGNVNVEMNAApgVDLTVLLNNMRAEYEAL----------AEQNRRDAEAWfnEKSAS-LQ 287
Cdd:TIGR02168 773 AeeeLAEAEAEIEELE----AQIEQLKEEL--KALREALDELRAELTLLneeaanlrerLESLERRIAAT--ERRLEdLE 844
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 288 QQISDDAGATTSARNELTEMKRTLQTLEIELQSLLATKHSLECSLTETESNYCAQLAQIQ----------AQIGALEEQL 357
Cdd:TIGR02168 845 EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELReleskrselrRELEELREKL 924
|
250
....*....|....*....
gi 119581082 358 HQVRTETEGQKLEYEQLLD 376
Cdd:TIGR02168 925 AQLELRLEGLEVRIDNLQE 943
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
185-368 |
2.33e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 2.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 185 QSVEADINGLRRVLDELTLCRTDLEIQLETLSEELAYLKKNHEEEMKALqcAAGGNVNVEMNAAPGvdLTVLLNN----- 259
Cdd:COG4942 58 AALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL--AELLRALYRLGRQPP--LALLLSPedfld 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 260 --MRAEY-EALAEQNRRDAEAwFNEKSASLQQQISddagATTSARNELTEMKRTLQTLEIELQSLLATKHSLECSLTETE 336
Cdd:COG4942 134 avRRLQYlKYLAPARREQAEE-LRADLAELAALRA----ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKEL 208
|
170 180 190
....*....|....*....|....*....|..
gi 119581082 337 SNYCAQLAQIQAQIGALEEQLHQVRTETEGQK 368
Cdd:COG4942 209 AELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
178-386 |
5.02e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.70 E-value: 5.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 178 ENELALHQ--SVEADINGLRRVLDELTLCRTDLEIQLETLSEELAYLKKNHEEEMKALQcAAGGNVNVEMNAAPGV--DL 253
Cdd:COG1196 226 EAELLLLKlrELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE-EAQAEEYELLAELARLeqDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 254 TVLLNNMRAEYEALAEQNRRDAEAwfNEKSASLQQQISDDAGATTSARNELTEMKRTLQTLEIELQSLLATKHSLEcslt 333
Cdd:COG1196 305 ARLEERRRELEERLEELEEELAEL--EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE---- 378
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 119581082 334 ETESNYCAQLAQIQAQIGALEEQLHQVRTETEGQKLEYEQLLDIKVHLEKEIE 386
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA 431
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
206-375 |
5.57e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 5.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 206 TDLEIQLETLSEELAylkknheeEMKALQCAAGGNVNVEMNAAPGVDLTVLLNNMRAEYEALaEQNRRDAEAWFNEKS-- 283
Cdd:COG3206 222 SELESQLAEARAELA--------EAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAEL-EAELAELSARYTPNHpd 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 284 -ASLQQQISDdagattsARNEL-TEMKRTLQTLEIELQSLLATKHSLECSLTETESNYcAQLAQIQAQIGALEEQLhQVR 361
Cdd:COG3206 293 vIALRAQIAA-------LRAQLqQEAQRILASLEAELEALQAREASLQAQLAQLEARL-AELPELEAELRRLEREV-EVA 363
|
170
....*....|....
gi 119581082 362 TETegqkleYEQLL 375
Cdd:COG3206 364 REL------YESLL 371
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
142-386 |
5.77e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 5.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 142 IDELKNQI--ISATTSNAHVVLQNDNARLTA--DDFRLKFENELAlhqSVEADINGLRRVLDELTLCRTDLEIQLETLSE 217
Cdd:TIGR02169 253 LEKLTEEIseLEKRLEEIEQLLEELNKKIKDlgEEEQLRVKEKIG---ELEAEIASLERSIAEKERELEDAEERLAKLEA 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 218 ELAYLKKNHEEEMKALQcaaggNVNVEMNAapgvdLTVLLNNMRAEYEAL---AEQNRRDAEAWFnEKSASLQQQISDda 294
Cdd:TIGR02169 330 EIDKLLAEIEELEREIE-----EERKRRDK-----LTEEYAELKEELEDLraeLEEVDKEFAETR-DELKDYREKLEK-- 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 295 gattsARNELTEMKRTLQTLEIELQsllatkhslecSLTETESNYCAQLAQIQAQIGALEEQLHQVRTETEGQKLEYEQL 374
Cdd:TIGR02169 397 -----LKREINELKRELDRLQEELQ-----------RLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL 460
|
250
....*....|..
gi 119581082 375 LDIKVHLEKEIE 386
Cdd:TIGR02169 461 AADLSKYEQELY 472
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
195-387 |
1.08e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 195 RRVLDELTLCRTDLEIQLETLSEELAYLKKNHEE--------------------EMKALQCAAGGNVN--VEMNAAPGVD 252
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEEleeeleqlrkeleelsrqisALRKDLARLEAEVEqlEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 253 LTVLLNNMRAEYEALAEQNRRDAEAwfNEKSASLQQQISDDAGATT-------SARNELTEMKRTLQTLEIELQSLLATK 325
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEA--EAEIEELEAQIEQLKEELKalrealdELRAELTLLNEEAANLRERLESLERRI 833
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 119581082 326 HSLECSLTETEsnycAQLAQIQAQIGALEEQLHQVRTETEGQKLEYEQLLDIKVHLEKEIET 387
Cdd:TIGR02168 834 AATERRLEDLE----EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
|
|
| KpsE |
COG3524 |
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis]; |
256-374 |
1.49e-04 |
|
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442746 [Multi-domain] Cd Length: 370 Bit Score: 43.69 E-value: 1.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 256 LLNNM--RAEYEAL--AEQNRRDAEAWFNEKSASL-----QQQISDDAGATTSARNELTEMKRTLQTLEIELQSLLATkh 326
Cdd:COG3524 166 LVNQLseRAREDAVrfAEEEVERAEERLRDAREALlafrnRNGILDPEATAEALLQLIATLEGQLAELEAELAALRSY-- 243
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 119581082 327 slecsltETESNycAQLAQIQAQIGALEEQLHQVRTE----TEGQKL-----EYEQL 374
Cdd:COG3524 244 -------LSPNS--PQVRQLRRRIAALEKQIAAERARltgaSGGDSLasllaEYERL 291
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
129-452 |
3.12e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 3.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 129 RGLDHDYS----RYFPIIDELKnQIISATTSNAHVVLQNDNARLtaddfrlkfENELALHqsvEADINGLRRVLDELTLC 204
Cdd:pfam15921 227 RELDTEISylkgRIFPVEDQLE-ALKSESQNKIELLLQQHQDRI---------EQLISEH---EVEITGLTEKASSARSQ 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 205 RTDLEIQLETLSEELaylKKNHEEEMKALQcaaggnvnvemnaapgvDLTVLLNNMRAEYealaeqnrRDAEAWFNEKSA 284
Cdd:pfam15921 294 ANSIQSQLEIIQEQA---RNQNSMYMRQLS-----------------DLESTVSQLRSEL--------REAKRMYEDKIE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 285 SLQQQISDDAGATTSARNELTEMKRTLQTLEIELQSLLATKHSLECSLT-ETESNycaqlAQIQAQIGALEEQLHQVRTE 363
Cdd:pfam15921 346 ELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSlEKEQN-----KRLWDRDTGNSITIDHLRRE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 364 TEGQKLEYEQ----LLDIKVHLEKEIETYCLLIDGEDGSCSKSKGYGGPGNQTKDsskttIVKTVVEEIDPRGKVLSSRV 439
Cdd:pfam15921 421 LDDRNMEVQRlealLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKE-----MLRKVVEELTAKKMTLESSE 495
|
330
....*....|...
gi 119581082 440 HTVEEKSTKVNNK 452
Cdd:pfam15921 496 RTVSDLTASLQEK 508
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
292-384 |
5.25e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.38 E-value: 5.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 292 DDAGA-----TTSARNELTEMKRTLQTLEIELQSLLAtkhslecsltETESNYCAQLAQIQAQIGALEEQLHQVRTETEG 366
Cdd:COG0542 396 DEAAArvrmeIDSKPEELDELERRLEQLEIEKEALKK----------EQDEASFERLAELRDELAELEEELEALKARWEA 465
|
90
....*....|....*...
gi 119581082 367 QKLEYEQLLDIKVHLEKE 384
Cdd:COG0542 466 EKELIEEIQELKEELEQR 483
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
185-368 |
6.11e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 6.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 185 QSVEADINGLRRVLDELTLCRTDLEIQLETLSEELAYLKKN---HEEEMKALQCAAGGNVNVE-MNAAPGVDLTVLLNN- 259
Cdd:COG3883 33 EAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEiaeAEAEIEERREELGERARALyRSGGSVSYLDVLLGSe 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 260 ------MRAEY-EALAEQNRRDAEAwfnekSASLQQQISDDAGATTSARNELTEMKRTLQTLEIELQSLLATKHSLECSL 332
Cdd:COG3883 113 sfsdflDRLSAlSKIADADADLLEE-----LKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQL 187
|
170 180 190
....*....|....*....|....*....|....*.
gi 119581082 333 TETESNYCAQLAQIQAQIGALEEQLHQVRTETEGQK 368
Cdd:COG3883 188 SAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAA 223
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
176-368 |
7.43e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 7.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 176 KFENELALHQSVEADINGLRRVLDELTLCRTDLEIQLETLSEELAYLKKNHEEEMKALQCAAGGNVNVE---MNAAPGVD 252
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEeqlETLRSKVA 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 253 LTV----LLNNMRAEYEALAEQNRRDAEAWFNEKSASLQQQISDDAGATTSARNELTEMKRTLQTLEIELQSLLATKHSL 328
Cdd:TIGR02168 390 QLElqiaSLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 119581082 329 ECSLTETESNYCAQLAQIQAQIGALEEQLHQVRTETEGQK 368
Cdd:TIGR02168 470 LEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVK 509
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
252-386 |
1.05e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 252 DLTVLLNNMRAEYEALAEQnRRDAEawfnEKSASLQQQISDDAGAT-TSARNELTEMKRTLQTLEIELQSLLATKHSLEC 330
Cdd:COG4913 299 ELRAELARLEAELERLEAR-LDALR----EELDELEAQIRGNGGDRlEQLEREIERLERELEERERRRARLEALLAALGL 373
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 119581082 331 SLTETESNYCAQLAQIQAQIGALEEQLHQVRTETEGQKLEYEQLLDIKVHLEKEIE 386
Cdd:COG4913 374 PLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIA 429
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
184-384 |
1.22e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 184 HQSVEADINGLRRVLDELTLCRTDLEIQLETLSEELAYLKKNHEEEMKALQcaaggnvnvemnaapgvdltvLLNNMRAE 263
Cdd:TIGR02168 276 VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE---------------------ELESKLDE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 264 YEALAEQNRrdaeawfnEKSASLQQQISDDAGATTSARNELTEMKRTLQTLEIELQSLLATKHSLEcsltetesnycAQL 343
Cdd:TIGR02168 335 LAEELAELE--------EKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE-----------LQI 395
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 119581082 344 AQIQAQIGALEEQLHQVRTETEGQKLEYEQLLDIKVHLEKE 384
Cdd:TIGR02168 396 ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELK 436
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
280-375 |
1.50e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 280 NEKSASLQQQISDdagattsARNELTEMKRTLQTLEIELQSLLATKHSLECSLTETE---SNYCAQLAQIQAQIGALEEQ 356
Cdd:COG4942 19 ADAAAEAEAELEQ-------LQQEIAELEKELAALKKEEKALLKQLAALERRIAALArriRALEQELAALEAELAELEKE 91
|
90
....*....|....*....
gi 119581082 357 LHQVRTETEGQKLEYEQLL 375
Cdd:COG4942 92 IAELRAELEAQKEELAELL 110
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
176-386 |
2.14e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 2.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 176 KFENELAlhqSVEADINGLRRVLDELTLCRTDLEIQLETLSEELAYLKKNHE---EEMKALQC------AAGGNVNVEM- 245
Cdd:TIGR02169 685 GLKRELS---SLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEklkERLEELEEdlssleQEIENVKSELk 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 246 -NAAPGVDLTVLLNNMRaeyEALAEQNRRDAEAWFNEKSASLQQQisddagattsaRNELTEMKRTLQTLEIELQSLLAT 324
Cdd:TIGR02169 762 eLEARIEELEEDLHKLE---EALNDLEARLSHSRIPEIQAELSKL-----------EEEVSRIEARLREIEQKLNRLTLE 827
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 119581082 325 KHSLECSLTETES--NYC-AQLAQIQAQIGALEEQLHQVRTETEGQKLEYEQLLDIKVHLEKEIE 386
Cdd:TIGR02169 828 KEYLEKEIQELQEqrIDLkEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERD 892
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
261-387 |
3.21e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 39.92 E-value: 3.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 261 RAEYEALAEQNRRDAEAWFNEKSASLQQQISDDAGATTSARNELTEMKRTLQTLEIELQSLLATKHSLECSLTETESN-- 338
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDia 305
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 119581082 339 -YCAQLAQIQAQIGALEEQLHQVRTETEGQKLEYEQLLDIKVHLEKEIET 387
Cdd:COG1196 306 rLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE 355
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
87-387 |
4.28e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 39.64 E-value: 4.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 87 TMQNLNDRLASY---LENVRALEEANADLEQKIKGWYEKFgpgscrgldhdysryfpiiDELKNQIISATTSNAHVVLQN 163
Cdd:PRK02224 235 TRDEADEVLEEHeerREELETLEAEIEDLRETIAETERER-------------------EELAEEVRDLRERLEELEEER 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 164 DNARLTADDFRLKFENELALHQSVEADINGLRRVLDELTLCRTDLEIQLETLSEELaylkKNHEEEMKALQCAAGgNVNV 243
Cdd:PRK02224 296 DDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDA----DDLEERAEELREEAA-ELES 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 244 EMNAApgvdlTVLLNNMRAEYEALAEQnRRDAEAWFN------EKSASLQQQISDDAGAttsARNELTEMKRTLQTLE-- 315
Cdd:PRK02224 371 ELEEA-----REAVEDRREEIEELEEE-IEELRERFGdapvdlGNAEDFLEELREERDE---LREREAELEATLRTARer 441
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 119581082 316 -IELQSLLATKHSLECSLTETESNYCAQLAQIQAQIGALEEQLHQVRTETEGQKLEYEQLLDIkVHLEKEIET 387
Cdd:PRK02224 442 vEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDL-VEAEDRIER 513
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
208-374 |
4.30e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 39.61 E-value: 4.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 208 LEIQLETLSEELAylkkNHEEEMKALQcAAGGNVNVEMNAAPGVDLTVLLNNMRAEyealAEQNRRDAEAwfneKSASLQ 287
Cdd:COG3206 180 LEEQLPELRKELE----EAEAALEEFR-QKNGLVDLSEEAKLLLQQLSELESQLAE----ARAELAEAEA----RLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 288 QQISDDAGATTSARN--ELTEMKRTLQTLEIELQSLLAT------------------KHSLECSLTETESNYCAQLAQIQ 347
Cdd:COG3206 247 AQLGSGPDALPELLQspVIQQLRAQLAELEAELAELSARytpnhpdvialraqiaalRAQLQQEAQRILASLEAELEALQ 326
|
170 180 190
....*....|....*....|....*....|
gi 119581082 348 AQIGALEEQLHQVRTETEG---QKLEYEQL 374
Cdd:COG3206 327 AREASLQAQLAQLEARLAElpeLEAELRRL 356
|
|
| SPEC |
cd00176 |
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ... |
178-375 |
9.36e-03 |
|
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Pssm-ID: 238103 [Multi-domain] Cd Length: 213 Bit Score: 37.43 E-value: 9.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 178 ENELALHQSVEADINGLRRVLDeltlcrtDLEIQLETLSEELAYLKKNHEEEMKALqcaaggNVNVEMNAAPGVDLTVLL 257
Cdd:cd00176 36 EALLKKHEALEAELAAHEERVE-------ALNELGEQLIEEGHPDAEEIQERLEEL------NQRWEELRELAEERRQRL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119581082 258 NNMRAEYEALAEQnrRDAEAWFNEKSASLQQQ-ISDDAGATTSARNELTEMKRTLQTLEIELQSLLATKHSLEcsltetE 336
Cdd:cd00176 103 EEALDLQQFFRDA--DDLEQWLEEKEAALASEdLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELL------E 174
|
170 180 190
....*....|....*....|....*....|....*....
gi 119581082 337 SNYCAQLAQIQAQIGALEEQLHQVRTETEGQKLEYEQLL 375
Cdd:cd00176 175 EGHPDADEEIEEKLEELNERWEELLELAEERQKKLEEAL 213
|
|
|