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Conserved domains on  [gi|463882|gb|AAA87889|]
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alpha-2-macroglobulin receptor associated protein, partial [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RAP super family cl05743
Receptor-associated protein (RAP); Receptor-associated protein, RAP, is an antagonist and a ...
1-40 2.17e-13

Receptor-associated protein (RAP); Receptor-associated protein, RAP, is an antagonist and a specialized chaperone in the endoplasmic reticulum that binds tightly to members of the low-density lipoprotein (LDL) receptor family and prevents them from associating with other ligands. RAP associates with (LDL) receptor-related protein (LRP) early in the secretory pathway, reducing its ligand binding capacity, and then dissociates from LRP in the low-pH environment of the Golgi; studies have shown that histidine residues in RAP D3 serve as a switch that facilitates its uncoupling from the receptor. RAP is a modular protein identified as having an internal triplication, with domains, D1, D2, and D3, each thought to have distinct functions; these domains are independent and do not interact. The carboxyl-terminal domain (D3) of RAP is required for folding and trafficking of LRP, while the amino-terminal tandem D1D2 domains of RAP are essential for blocking LRP from binding of certain ligands, such as activated forms of alpha2-macroglobulin.


The actual alignment was detected with superfamily member cd14807:

Pssm-ID: 471310  Cd Length: 98  Bit Score: 57.95  E-value: 2.17e-13
                       10        20        30        40
               ....*....|....*....|....*....|....*....|
gi 463882    1 ISPSDLSDIKGSVLHSRHTELKEKLRSINQGLDRLRRVSH 40
Cdd:cd14807 59 ISPSLEEDIKESVLHNKHTDLKERLRSINQGFERLRKVSH 98
 
Name Accession Description Interval E-value
RAP_D2 cd14807
Domain 2 of receptor-associated protein (RAP); This subfamily is the N-terminal domain (D2) of ...
1-40 2.17e-13

Domain 2 of receptor-associated protein (RAP); This subfamily is the N-terminal domain (D2) of receptor-associated protein, RAP, an antagonist and a specialized chaperone in the endoplasmic reticulum that binds tightly to members of the low-density lipoprotein (LDL) receptor family and prevents them from associating with other ligands. D2, along with RAP domain 1 (D1), is essential for blocking low-density lipoprotein receptor-related protein (LRP) from binding of certain ligands, such as alpha2-macroglobulin; D1 and D2 each bind LRP weakly but the tandem D1D2 binds much more tightly to the second and the fourth ligand-binding clusters present on LRP, suggesting the avidity effects arising from amino acid residues contributed from each domain. Also, RAP has regions that interact weakly with heparin, one located in D2 and two located in D3. The double module of complement type repeats, CR56, of LRP binds many ligands including alpha2-macroglobulin, which promotes the catabolism of the Abeta-peptide implicated in Alzheimer's disease.


Pssm-ID: 269814  Cd Length: 98  Bit Score: 57.95  E-value: 2.17e-13
                       10        20        30        40
               ....*....|....*....|....*....|....*....|
gi 463882    1 ISPSDLSDIKGSVLHSRHTELKEKLRSINQGLDRLRRVSH 40
Cdd:cd14807 59 ISPSLEEDIKESVLHNKHTDLKERLRSINQGFERLRKVSH 98
Alpha-2-MRAP_C pfam06401
Alpha-2-macroglobulin RAP, C-terminal domain; The alpha-2-macroglobulin receptor-associated ...
1-43 5.59e-09

Alpha-2-macroglobulin RAP, C-terminal domain; The alpha-2-macroglobulin receptor-associated protein (RAP) is a intracellular glycoprotein that binds to the 2-macroglobulin receptor and other members of the low density lipoprotein receptor family. The protein inhibits binding of all currently known ligands of these receptors. Two different studies have provided conflicted domain boundaries.


Pssm-ID: 461899 [Multi-domain]  Cd Length: 211  Bit Score: 48.43  E-value: 5.59e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 463882       1 ISPSDLSDIKGSVLHSR--------HTELKEKLRSINQGLDRLRRVSHQGY 43
Cdd:pfam06401  58 ISPEELDRFNEIELAEKrdneylekHNLLKEKHRELRDGYDRLRRIAAKGP 108
 
Name Accession Description Interval E-value
RAP_D2 cd14807
Domain 2 of receptor-associated protein (RAP); This subfamily is the N-terminal domain (D2) of ...
1-40 2.17e-13

Domain 2 of receptor-associated protein (RAP); This subfamily is the N-terminal domain (D2) of receptor-associated protein, RAP, an antagonist and a specialized chaperone in the endoplasmic reticulum that binds tightly to members of the low-density lipoprotein (LDL) receptor family and prevents them from associating with other ligands. D2, along with RAP domain 1 (D1), is essential for blocking low-density lipoprotein receptor-related protein (LRP) from binding of certain ligands, such as alpha2-macroglobulin; D1 and D2 each bind LRP weakly but the tandem D1D2 binds much more tightly to the second and the fourth ligand-binding clusters present on LRP, suggesting the avidity effects arising from amino acid residues contributed from each domain. Also, RAP has regions that interact weakly with heparin, one located in D2 and two located in D3. The double module of complement type repeats, CR56, of LRP binds many ligands including alpha2-macroglobulin, which promotes the catabolism of the Abeta-peptide implicated in Alzheimer's disease.


Pssm-ID: 269814  Cd Length: 98  Bit Score: 57.95  E-value: 2.17e-13
                       10        20        30        40
               ....*....|....*....|....*....|....*....|
gi 463882    1 ISPSDLSDIKGSVLHSRHTELKEKLRSINQGLDRLRRVSH 40
Cdd:cd14807 59 ISPSLEEDIKESVLHNKHTDLKERLRSINQGFERLRKVSH 98
Alpha-2-MRAP_C pfam06401
Alpha-2-macroglobulin RAP, C-terminal domain; The alpha-2-macroglobulin receptor-associated ...
1-43 5.59e-09

Alpha-2-macroglobulin RAP, C-terminal domain; The alpha-2-macroglobulin receptor-associated protein (RAP) is a intracellular glycoprotein that binds to the 2-macroglobulin receptor and other members of the low density lipoprotein receptor family. The protein inhibits binding of all currently known ligands of these receptors. Two different studies have provided conflicted domain boundaries.


Pssm-ID: 461899 [Multi-domain]  Cd Length: 211  Bit Score: 48.43  E-value: 5.59e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 463882       1 ISPSDLSDIKGSVLHSR--------HTELKEKLRSINQGLDRLRRVSHQGY 43
Cdd:pfam06401  58 ISPEELDRFNEIELAEKrdneylekHNLLKEKHRELRDGYDRLRRIAAKGP 108
RAP cd14803
Receptor-associated protein (RAP); Receptor-associated protein, RAP, is an antagonist and a ...
1-40 1.17e-08

Receptor-associated protein (RAP); Receptor-associated protein, RAP, is an antagonist and a specialized chaperone in the endoplasmic reticulum that binds tightly to members of the low-density lipoprotein (LDL) receptor family and prevents them from associating with other ligands. RAP associates with (LDL) receptor-related protein (LRP) early in the secretory pathway, reducing its ligand binding capacity, and then dissociates from LRP in the low-pH environment of the Golgi; studies have shown that histidine residues in RAP D3 serve as a switch that facilitates its uncoupling from the receptor. RAP is a modular protein identified as having an internal triplication, with domains, D1, D2, and D3, each thought to have distinct functions; these domains are independent and do not interact. The carboxyl-terminal domain (D3) of RAP is required for folding and trafficking of LRP, while the amino-terminal tandem D1D2 domains of RAP are essential for blocking LRP from binding of certain ligands, such as activated forms of alpha2-macroglobulin.


Pssm-ID: 269812  Cd Length: 97  Bit Score: 45.88  E-value: 1.17e-08
                       10        20        30        40
               ....*....|....*....|....*....|....*....|
gi 463882    1 ISPSDLSDIKGSVLHSRHTELKEKLRSINQGLDRLRRVSH 40
Cdd:cd14803 58 ESPGDLSDIKGEKHALGLDEDKEKEARLIRNLNVLLAKYG 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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