Conserved Protein Domain Family
cc_LAMB3_C

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cd22303: cc_LAMB3_C 
C-terminal coiled-coil domain found in laminin subunit beta-3 (LAMB3)
LAMB3 is also called epiligrin subunit beta, kalinin B1 chain, kalinin subunit beta, laminin B1k chain, laminin-5 subunit beta, or nicein subunit beta. It is a major component of the basement membrane in most adult tissues. Mutations in LAMB3 are associated with Herlitz junctional epidermolysis bullosa (H-JEB), a severe autosomal recessive disorder characterized by blister formation within the dermal-epidermal basement membrane. LAMB3 is a component of laminin, a complex glycoprotein consisting of three different polypeptide chains (alpha, beta, gamma). Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration, and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components. This model corresponds to the C-terminal coiled-coil domain of LAMB3, which may be involved in the integrin binding activity.
Statistics
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PSSM-Id: 411974
Aligned: 6 rows
Threshold Bit Score: 115.232
Created: 4-Aug-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative trimer
Feature 1:putative trimer interface [polypeptide binding site]
Evidence:
  • Comment:based on the structure evidence that Homo sapiens LAMB1 forms a trimer with LAMC1 and LAMA5
  • Comment:laminin is a complex glycoprotein consisting of three different polypeptide chains (alpha, beta, gamma)

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           ##  ## ##  #      ## ##  #  ##  ## ### ##  #  ## ### ## ### ### #### 
Q13751       1102 GARIQSVKTEAEELFGETMEMMDRMKDMELELLRGSQAIMLRSADLTGLEKRVEQIRDHINGRVLYYATCK 1172 human
XP_425827    1098 GSRVQSIDLEAKALFEETWNMMLRMETLETEIQESNRALVAKSARLSGLQEQVGRIRDAIHKRVTYYESCS 1168 chicken
XP_018104637 1087 GEKIANIKMEADRLIQETIQMMNKMKVIETELQGGTETLLMKFSQLKGLEEKARFIRDNINERALFYATCK 1157 African clawed frog
XP_018418272 1087 GQLVAKIKKDADDLFKESQQTMKRMKEIESELLKDQQYMIKKSSELNGLEDEIKKIREDISNRAIFYSTCR 1157 Nanorana parkeri
XP_005987722 1088 TERVRKLQQEAEGLMKKSTDMIDKIDGIETELEEGYQMLRDRSASLEDLEKKVRKIKESIWKKVEYYSTCK 1158 coelacanth
XP_700808    1090 SVRLLNLQKEAESLMTDTSDIIKALKDKEVSIQQRAADIEGNSTRLLGLDAQVEKLRDDIRNKVTRLNMCQ 1160 zebrafish

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