6C8U


Conserved Protein Domain Family
RRM1_MSI2

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cd12760: RRM1_MSI2 
Click on image for an interactive view with Cn3D
RNA recognition motif 1 (RRM1) found in RNA-binding protein Musashi homolog 2 (Musashi-2 ) and similar proteins
This subgroup corresponds to the RRM2 of Musashi-2 (also termed Msi2) which has been identified as a regulator of the hematopoietic stem cell (HSC) compartment and of leukemic stem cells after transplantation of cells with loss and gain of function of the gene. It influences proliferation and differentiation of HSCs and myeloid progenitors, and further modulates normal hematopoiesis and promotes aggressive myeloid leukemia. Musashi-2 contains two conserved N-terminal tandem RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), along with other domains of unknown function.
Statistics
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PSSM-Id: 410153
Aligned: 7 rows
Threshold Bit Score: 188.797
Created: 20-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putative RNA
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on similarity to the sequence of mouse Musashi1.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               # #####                    # #        ### #                      #  # ###
6C8U_1        21 QSNAGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVA 100 human
AAI52222      17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQPHHELDSKTIDPKVA 96  zebrafish
AAI69841      17 QHDPGKMFIGGLSWQTSPDSLRDYFNKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLAQPHHELDSKTIDPKVA 96  African clawed ...
Q96DH6        17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVA 96  human
KYO32165      17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLAQPHHELDSKTIDPKVA 96  American alligator
XP_007898877  17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLAQPHHELDSKTIDPKVA 96  elephant shark
XP_014346849  17 QHDPGKMFIGGLSWQTSPDSLKDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLAQPHHELDSKTIDPKVA 96  coelacanth
Feature 1        #            
6C8U_1       101 FPRRAQPKMVTRT 113 human
AAI52222      97 FPRRAQPKMVTRT 109 zebrafish
AAI69841      97 FPRRAQPKMVTRT 109 African clawed frog
Q96DH6        97 FPRRAQPKMVTRT 109 human
KYO32165      97 FPRRAQPKVGLAP 109 American alligator
XP_007898877  97 FPRRAQPKMVTRT 109 elephant shark
XP_014346849  97 FPRRAQPKMVTRT 109 coelacanth

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