1X4A


Conserved Protein Domain Family
RRM1_SRSF1

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cd12597: RRM1_SRSF1 
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RNA recognition motif 1 (RRM1) found in serine/arginine-rich splicing factor 1 (SRSF1) and similar proteins
This subgroup corresponds to the RRM1 of SRSF1, also termed alternative-splicing factor 1 (ASF-1), or pre-mRNA-splicing factor SF2, P33 subunit. SRSF1 is a splicing regulatory serine/arginine (SR) protein involved in constitutive and alternative splicing, nonsense-mediated mRNA decay (NMD), mRNA export and translation. It also functions as a splicing-factor oncoprotein that regulates apoptosis and proliferation to promote mammary epithelial cell transformation. SRSF1 is a shuttling SR protein and contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), separated by a long glycine-rich spacer, and a C-terminal RS domains rich in serine-arginine dipeptides.
Statistics
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PSSM-Id: 410010
Aligned: 13 rows
Threshold Bit Score: 137.67
Created: 19-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1X4A_A        19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGgPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97  human
Q5ZML3        12 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGgPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 90  chicken
Q6DII2        12 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGgPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 90  western clawed frog
Q7SXP4        11 GSNDCRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGgPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPR 89  zebrafish
XP_002611807   4 ANNDCRIYVGNLPPDIRVKDIEDIFYKYGNIRHIDLKNKRG-PPFAFVEFDDKRDAEDAVRGRDGYNYDGYRLRVEFPR 81  Florida lancelet
EFX71923       5 RNNEARIYVGNLPPDIRTKDIEDLFYKFGKIAYIDLKNRRG-PPFAFVEFEDPRDAEDAVHARDGYDYDGYRLRVEFPR 82  common water flea
NP_652611      3 SRNECRIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRG-PPFAFVEFEDARDADDAVKARDGYDYDGYRLRVEFPR 80  fruit fly
XP_002734208  10 GNNECRIYVGNLPPDIRVKDIEDIFYKYGNILDIDLKNRRG-PPFSFVEFEDKRDAEDAVRGRDGYDYDGYRLRVEFPR 87  Saccoglossus kow...
AEO35832       4 RGNECRIYVGNLPPDIRSKDIEDLFYKFGKITFIDLKNRRG-PPFAFVEFDDPRDAEDAVHARDGYDYDGYRLRVEFPR 81  Amblyomma maculatum
XP_005987513  14 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGgPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 92  coelacanth
OCT91965      83 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGgPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 161 African clawed frog
AAH56752      11 GNNDCRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGgPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 89  zebrafish
XP_007898929  11 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGSIRDIDLKNRRGgPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 89  elephant shark
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