Conserved Protein Domain Family
AMPK1_CBM

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pfam16561: AMPK1_CBM (this model, PSSM-Id:406865 is obsolete and has been replaced by 465176)
Glycogen recognition site of AMP-activated protein kinase
AMPK1_CBM is a family found in close association with AMPKBI pfam04739. The surface of AMPK1_CBM reveals a carbohydrate-binding pocket.
Statistics
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PSSM-Id: 406865
Aligned: 89 rows
Threshold Bit Score: 93.748
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
jgi:OSTLU_19706   9 YPTRFQWTYaGANNVHLCGSFTNWLETVPMAcethgDGNRVFTVMCDLPPGYHQYKFIVDGQWRHDENQAFIQDPLGNVN 88  Ostreococcus...
XP_002107791      7 LPTVFRWSG-GGSSVYVAGTFTNW-KKIPLV-----KSHSNFVTILDIPEGEHQFKYFIDGNWRHDENQKVIPDPYGGVN 79  Trichoplax a...
XP_003380196     57 YPVVVKWTG-SAKCVSLGGSWDGWKKKLPMV-----RSHEDFITIVDLPEGRHEFKFYVDGNWICDNNLPKTDNPLGSEN 130 Trichinella ...
EGR34137         10 NPTDFIWKY-GGNNVFICGSWNQWQTYIKLNrl--kQNPSWKHCNISLQAGQYQYKYVVDGQWRCDYECHVVYDTNGLQN 86  Ichthyophthi...
Q6BG12           23 QPVTFIWPY-EGIDVLLFGSWNLFQVGTKLI------GN---KCTLNLAVGQYEYKFLVDNQWRYLQNQETVNDNHGSYN 92  Paramecium t...
XP_001022952     22 nTTDFIWKN-GGNVVFLTGSWNQWQTSIKLNkq--nENPYYFTCTMSLQAGTYQYKFIVDGKWTYDQSSPSAEDGFGSFN 98  Tetrahymena ...
XP_015630980     22 VPTRFVWPY-GGKRVYLTGSFTRWTEHLPMSpvegcPT--VFQAICSLSPGIHQYKFCVDGEWRHDERQPTITGDYGVVN 98  Japanese rice
KRG92869         25 IPKRFVWPH-GGRRVFLTGSFTRWSAFIPMSpmegcPT--VFQVICSLPPGYHQYKFNVDGEWRHDEHQPFVSGDCGIVN 101 soybean
KRG96825         21 IPRRFVWPY-GGTTVFLTGSFTRWSNHIAMSpmegcPA--VFQVVCNLMPGFHQYKFNVDGEWRHDDQQPFVNGSCGVVN 97  soybean
XP_002991046     16 VPTTFIWPH-GGAQVLLCGSFTSWLTTLPMTpl--eNCPTVFQGTFNLPVGYHEYKFIVDGQWRWDHQGPVAHDLHGNVN 92  Selaginella ...
jgi:OSTLU_19706  89 NWLYVKPAgGAT 100 Ostreococcus lucimarinus CCE9901
XP_002107791     80 NILNVQKS-DFD 90  Trichoplax adhaerens
XP_003380196    131 NVLVIDRS-DYE 141 Trichinella spiralis
EGR34137         87 NTLEIVPKqIVH 98  Ichthyophthirius multifiliis
Q6BG12           93 NMIQVLPKrAYQ 104 Paramecium tetraurelia
XP_001022952     99 NVIEVVPrlvvy 110 Tetrahymena thermophila SB210
XP_015630980     99 TLCLTRDF-DQI 109 Japanese rice
KRG92869        102 TMYLVREP-DIL 112 soybean
KRG96825         98 TIYIVREP-DIL 108 soybean
XP_002991046     93 NCVTVKIPeLAS 104 Selaginella moellendorffii
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