Conserved Protein Domain Family
DEADc_DDX27

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cd17947: DEADc_DDX27 
DEAD-box helicase domain of DEAD box protein 27
DDX27 (also called RHLP, deficiency of ribosomal subunits protein 1 homolog, and probable ATP-dependent RNA helicase DDX27) is involved in the processing of 5.8S and 28S ribosomal RNAs. More specifically, the encoded protein localizes to the nucleolus, where it interacts with the PeBoW complex to ensure proper 3' end formation of 47S rRNA. DDX27 is a member of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 350705
Aligned: 19 rows
Threshold Bit Score: 282.992
Created: 30-Jan-2014
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
ATP bindingDEAD box
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:based on structures of other members of the DEAD-box helicase family with bound ADP/AMP

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                ## ###  #                 ########                                      
Q96GQ7       229 LLKAITamGFKQPTpIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPrqa-------------pvTRVLVL 295  human
NP_651970    168 LMRAIGvlGYIYPTpIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYRPlnn------------kaiTRVLVL 235  fruit fly
BAJ77622      11 LLKALSdlNFVEATlIQKEVIPLALSGRDIMAEAETGSGKTAAFLLPALERLLRSPyvrnsrvsslgrvggavgTKVLVL 90   Cryptosporidiu...
CAK59459     102 LVKACHeqGYKYPTkIQAQIVPLVLAGKDVLASSCTGSGKTAAFLLPLMQRFGNTKsq--------------kySKALIV 167  Paramecium tet...
CCA14359     227 ILRALNqmELTKPTlIQEYAIPMALLGKDICASAQTGSGKTAAFLLPILERLQLRTrri-------------aaTRVIII 293  Albugo laibach...
NP_001002869 212 LLKAIStmGFKQPTpIQKACVPVGLLGKDICACAATGTGKTAAFMLPVLERLIYKPret-------------qvTRVLVL 278  zebrafish
EGB10246      62 LLRAVAalGFSRPTaIQERVVPLALAGRDVCASAATGSGKTAAFGLPLLERVVRAKaahg-----------kptIRGVIL 130  Aureococcus an...
NP_001089455 192 LLKAISamSFTQPTpIQKACIPVGLLGKDICACAATGTGKTAAFMLPVLERLIYKPrea-------------pvTRVLVL 258  African clawed...
ADY42291     156 MLKAVGacGFTKPTpIQAACIPLALAGRDLCACAATGTGKTAAFMLPILERLLFKPkqk-------------svTRVLVL 222  pig roundworm
CBZ55704     242 LLRAIQdlEYAHPThIQAACLRPALEGRDLLANAQTGSGKTAAFLLPTLERLLHSPgvrtrkmtpngpagglrgTKALVL 321  Neospora canin...
Feature 1                                                                                        
Q96GQ7       296 VPTRELGIQVHSVTRQLAQFc-nITTCLAVGGLd-vKSQEAALRAAPDILIATPGRLIDHLHNcpsfHLSSIEVLILDEA 373  human
NP_651970    236 VPTRELGAQVYQVTKQLCQFt-tIDVGLAIGGLd-vKAQEAVLRQNPDIVIATPGRLIDHIKNtpsfTLDSIEVLILDEA 313  fruit fly
BAJ77622      91 LPSRELAMQCFGVLESLTKYcpvITRAVVTGGMn-iQQQERILKCQPHIVIATPGRILDMLLNtlsiQLELLEIIILDEA 169  Cryptosporidiu...
CAK59459     168 MPTRELALQCFEMFQKLNQFs-hCTAALVIGAVp-iQQQEAELRRYPDIIIATPGRIVDIMKNsfsiDLSSIEVLVLDEA 245  Paramecium tet...
CCA14359     294 CPVRELATQCQSVLIKLARFt-dITSALVVGGLp-lKAQELELRTCPDIIVCTPGRMIDHLRNspsvHLDSLEILVLDEA 371  Albugo laibach...
NP_001002869 279 VPTRELGIQVHTVARQLAQFt-tISTCLAVGGLd-lKSQEAALRAGPDVLIATPGRLIDHLHNtpsfELSQIEILILDEA 356  zebrafish
EGB10246     131 LPTRELAAQCEEMVRGLGQFs-gADVALVVGGAkdvKVQELALRRKPDVVVATPGRLLDHLTNgrgvHLDDVECCVLDEA 209  Aureococcus an...
NP_001089455 259 VPTRELGIQVHAVTRQLAQFt-eVTTCLAVGGLd-vKTQEAALRSGPDVLIATPGRLIDHLHNcpsfSLNCIEVLILDEA 336  African clawed...
ADY42291     223 VPTRELAMQVFHVTRLLSQFs-qVEICLCAGGLd-iKAQEAALRLGPDIVIATPGRLIDHLHNapnfSLHDIEVLVLDEA 300  pig roundworm
CBZ55704     322 LPTRELAMQCVQMLQCLSKYt-pVTHALACGGMt-lKAHENALRQQPDIVVATPGRILDLLLNsptvHLELLEIIVLDEA 399  Neospora canin...
Feature 1                                                                       
Q96GQ7       374 DRMLdEYFEEQMKEIIRMCSh------------HRQTMLFSATMTDEVKDLASVSLKNPVRIF 424  human
NP_651970    314 DRMLdEYFAEQMKEIINSCCk------------TRQTMLFSATMSEQVKDLAAVSLDKPIKVF 364  fruit fly
BAJ77622     170 DRLLdMGFRQECLEILKYSSr------------TRQTMLFSATLSRSVTDLALLALNNPCKVS 220  Cryptosporidium parvum
CAK59459     246 DRLMeMGFEAEIKEILQQTPr------------DRQTVLVSATLKATVKQLSLLALHKPVKVS 296  Paramecium tetraurelia
CCA14359     372 DRLLeLGFTEEIQEIVRMCPr------------ARQTMLFSATMTSKIDQLIALSMKRPVRIC 422  Albugo laibachii Nc14
NP_001002869 357 DRMLdEYFEEQMKEIIRMCAy------------QRQTMLFSATMSEEVKDLASVSLKQPVRIF 407  zebrafish
EGB10246     210 DRLLeLGFEDELRQLLGALPggsergkggrgsgTRQTMLFSATFGAKVESLAALSLVRPVRVR 272  Aureococcus anophagefferens
NP_001089455 337 DRMLdEYFEEQMKEIIRLCSh------------QRQTLLFSATMSEEVKDLASVSLRNPVRIF 387  African clawed frog
ADY42291     301 DRMLdEAFADQMKELIRLCSa------------NRQTLLFSATMTDQIEQLAAVSLKNPVRIF 351  pig roundworm
CBZ55704     400 DRLLeLGFREEILAILRHCHr------------ARQTLLFSATLTPSIASLASLALNRPLHIS 450  Neospora caninum Liverpool

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