Conserved Protein Domain Family
BTB_KCNC2_4

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cd18415: BTB_KCNC2_4 
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium voltage-gated channel subfamily C members KCNC2 and KCNC4
KCNC2, also called Shaw-like potassium channel or voltage-gated potassium channel Kv3.2, is a delayed rectifier voltage-gated potassium channel that mediates transmembrane potassium transport in excitable membranes, primarily in the brain. It contributes to the regulation of the fast action potential repolarization and in sustained high-frequency firing in neurons of the central nervous system. KCNC4, also called KSHIIIC or voltage-gated potassium channel subunit Kv3.4, is a novel high-voltage-activating, tetraethylammonium (TEA)-sensitive, type-A potassium channel that mediates the voltage-dependent potassium ion permeability of excitable membranes. It plays a pivotal role in oxidative stress-related neural cell damage as an oxidation-sensitive channel. Voltage-gated potassium (Kv) channels are composed of alpha subunits, which form the actual conductance pore, and cytoplasmic beta subunits, which are auxiliary proteins that associate with alpha subunits to modulate the activity of the Kv channel. KCNC2 and KCNC4 are alpha subunit that form functional homo- or hetero-tetrameric channels (with other alpha subunits) through their BTB/POZ domain, also known as tetramerization (T1) domain, which is a versatile protein-protein interaction motif.
Statistics
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PSSM-Id: 349722
Aligned: 11 rows
Threshold Bit Score: 242.376
Created: 14-Sep-2017
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative tetramer interface [polypeptide binding site]
Evidence:
  • Comment:based on the tetramer structures of Rattus norvegicus voltage-gated potassium channels Kv1.2 and Kv4.3

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              # ########  #                                                             
Q96PR1         7 NERVILNVGGTRHETYRSTLKTLPGTRLALLAsseppgdclttagdklqpsppplspppra-pplspgpggcfeggagnc 85  human
XP_017538919  28 NERIILNVGGTRHETYRNTLRTLPGTRLALLAselpssacavtaagccsggnrhal-----------ephhqhqhqqnql 96  red-bellied pir...
XP_009298216   7 RERVILNVGGTRHETYRSTLKTLPGTRLALLAsesdlelvldq------------------------------------- 49  zebrafish
XP_013928704   7 NERVILNVGGTRHETYRSTLKTLPGTRLALLAcqpqgdspgggeehhqppllpapnpapnpggggggpldtvggsgwssr 86  Thamnophis sirt...
Q03721        35 SEKIIINVGGTRHETYRSTLRTLPGTRLAWLAdpdgggrpetd------------------------------------- 77  human
XP_014320168   7 NERVILNVGGTRHETYRSTLKTLPGTRLALLAasepqgdcltaagaplqxpshlgacsrrgdlpslspgtrgcfeggagh 86  little brown bat
CAQ14842      35 SDKIIINVGGTRHETYRSTLRTIPGSRLAWLAdtdsqvnp---------------------------------------- 74  zebrafish
XP_020007626   7 NERVILNVGGTRHETYRSTLRTLPGTRLALLAssepqgdcltaagdklqplppplsppprp--pplspgpggcfeggagn 84  American beaver
XP_018428395   7 NERIILNVGGTRHETYRSTLKTVPGTRLALLAcesnsdpaleq------------------------------------- 49  Nanorana parkeri
XP_007901963   7 NDRIVLNVGGTRHETYKLTLKTLPGTRLALLAesdgqsl----------------------------------------- 45  elephant shark
OCT87455       7 NERIILNVGGTRHETYRSTLKTVPGTRLALLAcdsqsdqgleq------------------------------------- 49  African clawed ...
Feature 1                         # ##  #  #   #  #  # #       ##  #                             
Q96PR1        86 ssrggrasdhpGGGREFFFDRHPGVFAYVLNYYRTGKLHCPADVCGPLFEEELAFWGIDETDVEPCCWMTYRQHRDAEEA 165 human
XP_017538919  97 qlqlqqqqvraRANNEFFFDRHPGVFAYVLNYYRTGKLHCPADVCGPLFEEELSFWGIDETDVEPCCWMTYRQHRDAEEA 176 red-bellied pir...
XP_009298216  50 lqqvpgfieysARSNEYFFDRHPGVFAYVLNYYRTGKLHCPADVCGPLFEEELSFWGIDETDVEPCCWMTYRQHRDAEEA 129 zebrafish
XP_013928704  87 angivvarggsGACCEFFFDRHPGVFAYVLNYYRTGKLHCPADVCGPLFEEELAFWGIDETDVEPCCWMTYRQHRDAEEA 166 Thamnophis sirt...
Q03721        78 gggvgssgssgGGGCEFFFDRHPGVFAYVLNYYRTGKLHCPADVCGPLFEEELTFWGIDETDVEPCCWMTYRQHRDAEEA 157 human
XP_014320168  87 csptaaamtxpGGGCEFFFDRHPGVFAYVLNYYRTGKLHCPADVCGPLFEEELAFWGIDETDVEPCCWMTYRQHRDAEEA 166 little brown bat
CAQ14842      75 ----dadtgqtHPNSEFFFDRHPGIFAYVLNYYRTGKLHCPADVCGPLFEEELAFWGIDETDVEPCCWMTYRQHRDAEEA 150 zebrafish
XP_020007626  85 csshggsdehpGGGREFFFDRHPGVFAYVLNYYRTGKLHCPADVCGPLFEEELAFWGIDETDVEPCCWMTYRQHRDAEEA 164 American beaver
XP_018428395  50 -qqlpgpfqsgCRGNEFFFDRHPGVFAYVLNYYRTGKLHCPADVCGPLFEEELAFWGIDETDVEPCCWMTYRQHRDAEEA 128 Nanorana parkeri
XP_007901963  46 ----adyddpdPGSRQYFFDRHPGVFAYVLNYYRTGKLHCPADVCGPLFEEELAFWGIDETDVEPCCWMTYRQHRDAEEA 121 elephant shark
OCT87455      50 -vpvlgsfnvpSRGNEFFFDRHPGVFAYVLNYYRTGKLHCPADVCGPLFEEELAFWGIDETDVEPCCWMTYHQHRDAEEA 128 African clawed ...
Feature 1         
Q96PR1       166 L 166 human
XP_017538919 177 L 177 red-bellied piranha
XP_009298216 130 L 130 zebrafish
XP_013928704 167 L 167 Thamnophis sirtalis
Q03721       158 L 158 human
XP_014320168 167 L 167 little brown bat
CAQ14842     151 L 151 zebrafish
XP_020007626 165 L 165 American beaver
XP_018428395 129 L 129 Nanorana parkeri
XP_007901963 122 L 122 elephant shark
OCT87455     129 L 129 African clawed frog

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