3FDT,2RVL,2RVM


Conserved Protein Domain Family
CD_HP1alpha_Cbx5

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cd18651: CD_HP1alpha_Cbx5 
Click on image for an interactive view with Cn3D
chromodomain of heterochromatin protein 1 homolog alpha
CHRomatin Organization Modifier (chromo) domain of heterochromatin protein 1 homolog alpha (also known as HP1alpha, Cbx5, and Chromobox 5), and related proteins. HP1alpha has diverse functions in heterochromatin formation, gene regulation, and mitotic progression, and forms complex networks of gene, RNA, and protein interactions. HP1 has two conserved protein-protein interaction domains, a single N-terminal chromodomain (CD) which can bind to histone proteins via methylated lysine residues, and a related C-terminal chromo shadow domain (CSD) which is responsible for the homodimerization and interaction with a number of chromatin-associated non-histone proteins; a flexible hinge region separates the CD and CSD and may bind nucleic acid. HP1 is a highly conserved non-histone chromosomal protein that is evolutionarily conserved from fission yeast to plants and animals. There are three human homologs of HP1 proteins: HP1alpha, HP1beta (also known as Cbx1), and HP1gamma (also known as Cbx3).
Statistics
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PSSM-Id: 349298
Aligned: 6 rows
Threshold Bit Score: 91.5911
Created: 5-Dec-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide binding
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:
  • Structure:3FDT; human chromobox homolog 5 (CBX5) chromodomain binds H3K9(me)3 peptide, contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1     ####                # #          #   #######      
3FDT_A      3 EYVVEKVLDRRVVkGQVEYLLKWKGFseeHNTWEPEKNLDCPELISEFMK 52  human
EMP30237   71 EYVVEKVLDRRVVkGQVEYLLKWKGFseeHNTWEPEKNLDCPELISEFMK 120 green sea turtle
2RVL_A     22 EYVVEKVLDRRMVkGQVEYLLKWKGFseeHNTWEPEKNLDCPELISEFMK 71  house mouse
2RVM_A     22 EYVVEKVLDRRMVkGQVEYLLKWKGFseeHNTWEPEKNLDCPELISEFMK 71  house mouse
NP_988907  36 EYVVEKVLDRRVVkGQVEFLLKWKGFseeHNTWEPDRNLDCPELISEFMK 85  tropical clawed frog
AAI64295   20 EYVVEKVLDRRVVkGRVEYFLKWKGFtekHNTWEPEKNLDCPELISEFMK 69  zebrafish

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