2V8Q,2OOX,2QR1,2QLV,4CFE,4RER,3T4N,4ZHX


Conserved Protein Domain Family
CBS_euAMPK_gamma-like_repeat1

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cd04618: CBS_euAMPK_gamma-like_repeat1 
Click on image for an interactive view with Cn3D
Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains found in AMP-activated protein kinase gamma-like proteins, repeat 1
AMP-activated protein kinase (AMPK) plays multiple roles in the body's overall metabolic balance and response to exercise, nutritional stress, hormonal stimulation, and the glucose-lowering drugs metformin and rosiglitazone. AMPK consists of a catalytic alpha subunit and two non-catalytic subunits, beta and gamma, each with multiple isoforms that form active 1:1:1 heterotrimers. This cd contains 2 tandem repeats of the CBS domains found in the gamma subunits of AMPK. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).
Statistics
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PSSM-Id: 341388
Aligned: 42 rows
Threshold Bit Score: 172.356
Created: 29-Nov-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 41 residues -Click on image for an interactive view with Cn3D
Feature 1:CBS repeat [structural motif]
Evidence:
  • None

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #########   #########     ######    ######  ######                      
2V8Q_E     36 RCYDLIPTSSKLVVFDTsLQVKKAFFALVTNGVRAAPLWDskkqSFVGMLTiTDFINILHRYYksal---vqiyELEEHK 112 Norway rat
2QLV_C     24 TSYDVLPVSYRLIVLDTsLLVKKSLNVLLQNSIVSAPLWDsktsRFAGLLTtTDFINVIQYYFsnpd----kfeLVDKLQ 99  baker's yeast
AAW40857   80 SSYDVFPVSFRLIVLDTqLKVKKALDVMLLYGVVSAPLWNtssaQFAGMFTvQDVIHLIQYYYhtssw-egataDVEQFR 158 Cryptococcus neofo...
3T4N_C     31 TSYDVLPVSYRLIVLDTsLLVKKSLNVLLQNSIVSAPLWDsktsRFAGLLTtTDFINVIQYYFsnpd----kfeLVDKLQ 106 Saccharomyces cere...
CAE76143  100 TSYDVLPLSFRLVILDNdLLIRKSLNILIQNGIVSAPLWDsrngTFAGLLTsTDYINVIQYYCqfph----eidQVDQFR 175 Neurospora crassa
EGF81160   21 TCYDLLPVSFKVIVFDTsLLLKKALTALIQHGVQSAPLWDsatqEFAGMLTvTDFIQLILYYHgrnatyeealeEIDILD 100 Batrachochytrium d...
CAG61496   29 SSYDILPVSYRMIVLESgLPVKRALNVLIQNKVLSAPIWDskrsRFAGILTlMDFIGLVQYFFsnpd----qfdTMDKLR 104 Candida glabrata
EMR09207   23 TCYDVLPVSFRMIVLDTeLLVKKSLTILFQNNIVSAPLWNmktcTFAGLLTvSDFINVIQYFHqnasy-sqtleDIEKLK 101 Pneumocystis murin...
EOR01025   39 DCLSILPVSSKMIVFDTrLQVIKALNALVQNGVVSAPLWSsvesKFAGMLTiSDLVHLMQYYYattssyegaadDVEQLT 118 Wallemia ichthyoph...
EPB89400    9 TCYDVLPISFRLVVFDTeLPVKKALEILIKNGIVSAPLWSsqthSFAGMLTvSDFISLIQYYYtnqt----hqsDIETMR 84  Mucor circinelloid...
Feature 1     #####                                                               
2V8Q_E    113 IETWREVYLQdsf---kpLVCISPNASLFDAVSSLIRNKIHRLPVIDp----eSGNTLYILTHKRILK 173 Norway rat
2QLV_C    100 LDGLKDIERAlgvd-qldTASIHPSRPLFEACLKMLESRSGRIPLIDqdeethREIVVSVLTQYRILK 166 baker's yeast
AAW40857  159 LQSIRDIEKVlhvp-pppLLYVHPLRPLYDACRYLIRTHARRLPLIDkdpqtnGEVVISVLTQYRVLK 225 Cryptococcus neoformans var. n...
3T4N_C    107 LDGLKDIERAlgvd-qldTASIHPSRPLFEACLKMLESRSGRIPLIDqdeethREIVVSVLTQYRILK 173 Saccharomyces cerevisiae S288c
CAE76143  176 LSSLRDIERAigvl-pleTVSVHPMRPLYEACRRMLKTRARRIPLIDtddetgRETVVSVITQYRILK 242 Neurospora crassa
EGF81160  101 ISALRALEQKigcl-pphIVTIHPMDSLYEASRLLIENKLHRLPLIDri--dnADIIVSVVTQNKILK 165 Batrachochytrium dendrobatidis...
CAG61496  105 LKDLKEIEYSigmhapleNCTIHPERSLFEACELMLQSQTRKIALLDkedfteRELVVGMLTQYRILK 172 Candida glabrata
EMR09207  102 LDGLRDIEKSinap-pleTISINPMRSLYEACERIRLTKAKRIPLIDhddetyHEVVVSVLTQYRILK 168 Pneumocystis murina B123
EOR01025  119 LGNLRDIETAievl-pppLHSIHPMRPLLEACHILMTSHARRLPLIDhddrtdVEVVLSVLTQYRVLK 185 Wallemia ichthyophaga EXF-994
EPB89400   85 LSHLTRQIKQ--------NYPIHPMTTLYDAAILMSTTRAHRIPLMDs-----KKEIISVMTQYRLMK 139 Mucor circinelloides f. circin...

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