Conserved Protein Domain Family
VCBS
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pfam13517: VCBS (this model, PSSM-Id:290251 is obsolete and has been replaced by 433275)
Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).
Links
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Statistics
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PSSM-Id: 290251
Aligned: 782 rows
Threshold Bit Score: 27.5656
Created: 29-Jun-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Q11XP9        151 DVNGDRKPDLLV--L--S--DnSR-ISI--YKNSSTPTnvnFEKF-F-ETTLLTT--AVPAsLAVADLNTDGVMDIVV 215  Cytophaga hutch...
WP_011698475  396 DADHDGDLDFFL--V--Na-D-GP-NEF--LNNNRDGT---FRPL-AaERGLGGS--GSHRsVVVADLDGDRDLDLIV 458  Syntrophobacter...
WP_012933861  209 DFDGDGRLDAAV--AhvFapG-GI-VTV--LRGDGAGG---FARA-A-GSPYAIG--SGTFaLSAGDLDGDGRLDLVS 273  Conexibacter wo...
WP_012933861  324 DLDGDGRLDAALplG--E--S-AG-VWP--LLGDGAGR---LLSS-A-MEPIGTA--ANLNaGAIADLDGDGRLDVLS 386  Conexibacter wo...
WP_012933861   53 DFDENGRTDIAV--Sl-Q--S-GD-LSI--LLRDGSGG---YVHAaG-SPRALGS--SDAGpLRVADVNRDGHADVVA 115  Conexibacter wo...
WP_012843926  547 DLDNNGAQDLIA--S--I--P-GR-TWI--WLVDARGR---LRS-------EPLT--LDVQaFDAADLDGDGRLDLAA 602  Rhodothermus ma...
XP_001743708  665 DLDNDGDLDLVI--Vs-Tl-D-NI-ISF--FINLGANQp-hRQFA-S-RLVLSSSl-AQARaLVVADISNDGHPDIVA 730  Monosiga brevic...
WP_015781613  700 DINNDGLDDLVL--L--Rg-A-NTiGSS--FINDGAGN---FNKA-A-D--IAGE--ETVVtAELAHINGDGHLDLVV 760  Kangiella koree...
XP_001747750  259 DIDQDGDEDLVV--L--M--D-SN-NYVgwLLNKGNGN---FT-----EYIYPSSdlRSAHsVVLADVNGDDFPDAIV 320  Monosiga brevic...
WP_012843926  444 DLDGDGDPDLAA--L--Dl-N-GV-LHL--WRNERQG-----LFL-K-DSTIPAR--SGCT-LAAADLDHDGLLELTL 502  Rhodothermus ma...
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