Conserved Protein Domain Family
4_1_CTD

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pfam05902: 4_1_CTD (this model, PSSM-Id:283537 is obsolete and has been replaced by 461774)
4.1 protein C-terminal domain (CTD)
At the C-terminus of all known 4.1 proteins is a sequence domain unique to these proteins, known as the C-terminal domain (CTD). Mammalian CTDs are associated with a growing number of protein-protein interactions, although such activities have yet to be associated with invertebrate CTDs. Mammalian CTDs are generally defined by sequence alignment as encoded by exons 18-21. Comparison of known vertebrate 4.1 proteins with invertebrate 4.1 proteins indicates that mammalian 4.1 exon 19 represents a vertebrate adaptation that extends the sequence of the CTD with a Ser/Thr-rich sequence. The CTD was first described as a 22/24-kDa domain by chymotryptic digestion of erythrocyte 4.1 (4.1R). CTD is thought to represent an independent folding structure which has gained function since the divergence of vertebrates from invertebrates.
Statistics
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PSSM-Id: 283537
Aligned: 15 rows
Threshold Bit Score: 109.452
Created: 24-Jun-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
BAB12159       10 EKNSLRVEGDNIY-VRHSnlmlEI----------DGG-AGGDSGTLLTAQTITSESVSTTTTTHITKTVKGGISETRIEK 77   crab-eating m...
XP_011674353  570 DVPYVKTENTTIT-YEKD----PE----------DAVdGDEDPGTLISAQTMTSETRSMTTTTHITKTVKGELTETRVEK 634  purple sea ur...
XP_002126269  788 QPPIVQTETKTIT-YESS----TVrsqnepaqaeSSR-TDEHQSELVSSQIISSETEYTVTTTEITKIVHGSVSETVMEK 861  vase tunicate
XP_005924671  785 DMPVIHTETKTIT-YEAA----EV----------ETN-GDADPGVLLSAQTITSETTSTTTTTHITKTVKGGISETRIEK 848  Burton's mout...
XP_005460525  892 mqPSAHRDDDEFKpLQES----QV----------E---SDTPAGLLLSSQTFITETSNTTTTTHITKMAKGGISETRIEK 954  Nile tilapia
XP_005994429  646 RKEAVTTSHTAIT-ETRS-----V----------SPVtNSSGKQTATNVQAVAAETISTSTTTHVTKTAKGGYSETRIEK 709  coelacanth
XP_010591323  990 EVPIVQTETKTIT-YESP----QV----------DGG-XGDDSGTLVSAQTITSDSVSTTTTTHITKTVKGGISETRIEK 1053 African savan...
XP_012062222   61 TVPVVATETRKVA-LESE------------------DgNYSATGEIVSTQTISSKTRTVETIT--YKTEKDGVVETRVEQ 119  Atta cephalotes
EJW82583      288 QAPIVETIDNKLT-CEPAndvdKI----------SGNdYSDIPGELVSSHTVTQGSRTIETIT--YKTEKNGTVETHVEH 354  Wuchereria ba...
XP_009292404  561 DIPIVHTETKTIT-YESA----QP----------NAL-AEKESGMLLSAQTITSETVSTTTTTQITKTVKGGISETRIEK 624  zebrafish
BAB12159       78 RIVITGDAD-I-DHDQA---------LAQAIREAREQHPDMSVTRVVVHKETE 119  crab-eating macaque
XP_011674353  635 KIVIQADGD-L-DHDKEmteaqvralLAETLAEEQLQNPDFQVTRIVIQKEGE 685  purple sea urchin
XP_002126269  862 QVVSTGDAS-VdDHHKA---------MADMIRDA-QLNPNLSITKVVVHEErp 903  vase tunicate
XP_005924671  849 RIVITGDAD-I-DHDEA---------LAQAIKEAKEQHPDMSVTKVVVHKETE 890  Burton's mouthbrooder
XP_005460525  955 RIVISGDPE-V-DHNQA---------LEIALIEVWQQHPEPFITWFIVRKETK 996  Nile tilapia
XP_005994429  710 RIIITGDED-V-DQDQA---------LALAIKEAKQQHPDMLVTKAVVYKEpm 751  coelacanth
XP_010591323 1054 RIVITGDGD-I-DHDQA---------LAQAIKEAREQHPDMSVTRVVVHKETE 1095 African savanna elephant
XP_012062222  120 KITIQSDGDpI-DHDRA---------LAEAIQEATAMNPDMTVEKIEIQQQTa 162  Atta cephalotes
EJW82583      355 RVTI-HSCDdI-DHDAE---------LSQAILEATNMNPDMTVEKIEVKHESQ 396  Wuchereria bancrofti
XP_009292404  625 RIVITGDTE-I-DHDKA---------LAQAIKEAKEQHPDMSVTKVVVHQETE 666  zebrafish
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