2ZYZ,3P1Z,2CV8,1A79


Conserved Protein Domain Family
tRNA_int_endo_N

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pfam02778: tRNA_int_endo_N (this model, PSSM-Id:280873 is obsolete and has been replaced by 397071)
Click on image for an interactive view with Cn3D
tRNA intron endonuclease, N-terminal domain
Members of this family cleave pre tRNA at the 5' and 3' splice sites to release the intron EC:3.1.27.9.
Statistics
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PSSM-Id: 280873
Aligned: 45 rows
Threshold Bit Score: 42.9687
Created: 11-Jul-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2ZYZ_D         1 MIGYLRGLAVIVE-----DVEFARR---LYKEGFYGRFlgydkvkrdeveKINAPLILGLYEALYLAEK-GRLKVMgEDG 71  Pyrobaculum aer...
Q8TGZ7        13 RAKVFEGGSLVSK-----DYEDLKR-------RYFGT-------------EHGNVLFLDPFETVYLTEK-GEIDPEtPEG 66  Methanopyrus ka...
Q2FKW0       172 APGLLSSISVIIN-------AGADL---GYDQAFYGKR------------LDDSRIVLSTVEAAYLIEQ-GLVTIQ-LGE 227 Methanospirillu...
Q5ZIN2       253 VQEEEESSLCPEEgsareQENFVKKeklVCRRNPF---------------RIFEYLQLSLEEAFFLVYAlGCLTVY-YGE 316 chicken
Q9M1E8        35 ALGFLSSCNVLLS-----VESEEAE---LLDRCCFGRLvvg-------aeKDKRWIQLSFEEAFFLFYKlKCIKIClHGR 99  thale cress
WP_011843485 173 VEATLFGTYALAH-------LPPGT---PLEEDWYGKR------------LDTERLLLRPVESIYLMRR-GCLSIT-QDE 228 Methanoculleus ...
WP_013482390   9 VEGELSRDLAIIS-----DDSMRHE---L-ETRGYGE-------------VDKKRFYLRPFESLYLLFY-GRLKLA-KSG 64  Cenarchaeum sym...
ABS55173     189 AESVLVGRSAMIR-----V--PLQS---DLERAGFGKR------------LDDERLMLAPVELLYLMDC-GVLKAK-RDG 244 Methanoregula b...
WP_012214833  19 VRGTLVSDQACIS-----DKKMIHE---L-ELKGYGE-------------IEKEKFFLKQFETLYLLYT-NKLILK-KGK 74  Nitrosopumilus ...
WP_011839277   7 VWFDQSKCIGIVK-----DKKSINN----LEKKWFGR-------------LEGENLVLDIVELAYLLLH-GRIRLVlEGL 63  Staphylothermus...
2ZYZ_D        72 REVAPEELA 80  Pyrobaculum aerophilum
Q8TGZ7        67 EPMSVEELL 75  Methanopyrus kandleri AV19
Q2FKW0       228 ATLTAEEYC 236 Methanospirillum hungatei JF-1
Q5ZIN2       317 EPLTILKLW 325 chicken
Q9M1E8       100 SLENEVDLW 108 thale cress
WP_011843485 229 EPMAAEQFL 237 Methanoculleus marisnigri
WP_013482390  65 KAIGFESML 73  Cenarchaeum symbiosum
ABS55173     245 AFISTADYF 253 Methanoregula boonei 6A8
WP_012214833  75 KEIDFDFFM 83  Nitrosopumilus maritimus
WP_011839277  64 EITTYNEFL 72  Staphylothermus marinus
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